Auxin responsive protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 23 - 191 | 3.8e-55 | TIR domain |
| TIR_2 | PF13676 | 25 - 120 | 1.3e-14 | TIR domain |
| NB-ARC | PF00931 | 205 - 377 | 2.3e-17 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 448 - 516 | 4.3e-19 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 633 - 714 | 7.7e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 706 - 791 | 4.7e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 728 - 876 | 4.1e-08 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 723, 2292 |
| AarI | CACCTGC | 1 cut(s) | 2786 |
| Acc36I | ACCTGC | 1 cut(s) | 2786 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1436 |
| AccI | GTMKAC | 2 cut(s) | 1570, 3160 |
| AccII | CGCG | 4 cut(s) | 103, 1596, 2625, 2966 |
| AccIII | TCCGGA | 1 cut(s) | 1138 |
| AclWI | GGATC | 5 cut(s) | 350, 954, 1421, 2283, 2352 |
| AcoI | YGGCCR | 2 cut(s) | 2150, 2640 |
| AcuI | CTGAAG | 3 cut(s) | 70, 891, 2745 |
| AfaI | GTAC | 5 cut(s) | 128, 635, 1407, 2307, 2360 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 23, 910, 1436, 1459, 1783, 2038, 2039 |
| AgeI | ACCGGT | 1 cut(s) | 2410 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2188 |
| AjnI | CCWGG | 2 cut(s) | 1992, 2905 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2727, 2759 |
| AleI | CACNNNNGTG | 1 cut(s) | 390 |
| Alw21I | GWGCWC | 3 cut(s) | 1660, 2654, 2758 |
| Alw26I | GTCTC | 7 cut(s) | 1445, 1551, 2051, 2062, 2175, 2611, 2692 |
| AlwI | GGATC | 5 cut(s) | 350, 954, 1421, 2283, 2352 |
| Aor13HI | TCCGGA | 1 cut(s) | 1138 |
| AoxI | GGCC | 7 cut(s) | 118, 382, 1461, 2041, 2150, 2260, 2640 |
| ApeKI | GCWGC | 5 cut(s) | 455, 470, 1256, 1819, 1855 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1852, 1884 |
| AseI | ATTAAT | 1 cut(s) | 215 |
| AsiGI | ACCGGT | 1 cut(s) | 2410 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1350, 1533, 2400 |
| AspLEI | GCGC | 2 cut(s) | 105, 1938 |
| AspS9I | GGNCC | 7 cut(s) | 382, 986, 1600, 1786, 1868, 1996, 2041 |
| AsuHPI | GGTGA | 4 cut(s) | 404, 2119, 2603, 2767 |
| AsuII | TTCGAA | 1 cut(s) | 2546 |
| AvaII | GGWCC | 5 cut(s) | 986, 1600, 1786, 1868, 1996 |
| AxyI | CCTNAGG | 1 cut(s) | 852 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2289, 2322 |
| BalI | TGGCCA | 1 cut(s) | 2642 |
| BanII | GRGCYC | 1 cut(s) | 1660 |
| BauI | CACGAG | 2 cut(s) | 1548, 2493 |
| BbsI | GAAGAC | 1 cut(s) | 624 |
| Bbv12I | GWGCWC | 3 cut(s) | 1660, 2654, 2758 |
| BbvI | GCAGC | 5 cut(s) | 467, 482, 1243, 1806, 1842 |
| BccI | CCATC | 9 cut(s) | 164, 494, 1136, 1316, 1742, 1937, 2231, 2276, 2317 |
| BceAI | ACGGC | 4 cut(s) | 1702, 2028, 2703, 2766 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1529, 1563 |
| BciT130I | CCWGG | 2 cut(s) | 1994, 2907 |
| BciVI | GTATCC | 2 cut(s) | 91, 2913 |
| BclI | TGATCA | 2 cut(s) | 1333, 2109 |
| BcoDI | GTCTC | 7 cut(s) | 1445, 1551, 2051, 2062, 2175, 2611, 2692 |
| BfaI | CTAG | 1 cut(s) | 2279 |
| BfmI | CTRYAG | 1 cut(s) | 2354 |
| BfoI | RGCGCY | 1 cut(s) | 1939 |
| BfuAI | ACCTGC | 1 cut(s) | 2786 |
| BfuI | GTATCC | 2 cut(s) | 91, 2913 |
| BglII | AGATCT | 1 cut(s) | 796 |
| BisI | GCNGC | 7 cut(s) | 456, 471, 1257, 1820, 1856, 2153, 3041 |
| BlsI | GCNGC | 7 cut(s) | 457, 472, 1258, 1821, 1857, 2154, 3042 |
| BmcAI | AGTACT | 2 cut(s) | 635, 2360 |
| Bme1390I | CCNGG | 2 cut(s) | 1994, 2907 |
| Bme18I | GGWCC | 5 cut(s) | 986, 1600, 1786, 1868, 1996 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2188 |
| BmgT120I | GGNCC | 7 cut(s) | 382, 986, 1600, 1786, 1868, 1996, 2041 |
| BmiI | GGNNCC | 3 cut(s) | 28, 1787, 1870 |
| BmrFI | CCNGG | 2 cut(s) | 1994, 2907 |
| BmsI | GCATC | 5 cut(s) | 272, 1081, 1488, 1731, 3027 |
| BoxI | GACNNNNGTC | 1 cut(s) | 657 |
| BpiI | GAAGAC | 1 cut(s) | 624 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 33 |
| BpmI | CTGGAG | 3 cut(s) | 987, 2075, 2360 |
| Bpu10I | CCTNAGC | 1 cut(s) | 410 |
| Bpu14I | TTCGAA | 1 cut(s) | 2546 |
| BpuEI | CTTGAG | 4 cut(s) | 781, 1625, 2057, 2177 |
| BsaAI | YACGTR | 1 cut(s) | 626 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2349 |
| BsaI | GGTCTC | 1 cut(s) | 1445 |
| BsaJI | CCNNGG | 2 cut(s) | 2271, 2964 |
| BsaWI | WCCGGW | 2 cut(s) | 1138, 2410 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 786, 816 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 23, 910, 1436, 1459, 1783, 2038, 2039 |
| Bse118I | RCCGGY | 1 cut(s) | 2410 |
| Bse1I | ACTGG | 4 cut(s) | 1777, 1799, 2263, 2774 |
| Bse21I | CCTNAGG | 1 cut(s) | 852 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2349 |
| BseAI | TCCGGA | 1 cut(s) | 1138 |
| BseBI | CCWGG | 2 cut(s) | 1994, 2907 |
| BseDI | CCNNGG | 2 cut(s) | 2271, 2964 |
| BseJI | GATNNNNATC | 1 cut(s) | 2349 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 23, 910, 1436, 1459, 1783, 2038, 2039 |
| BseMII | CTCAG | 5 cut(s) | 71, 1155, 2256, 2444, 2606 |
| BseNI | ACTGG | 4 cut(s) | 1777, 1799, 2263, 2774 |
| BseRI | GAGGAG | 2 cut(s) | 1872, 3111 |
| BseXI | GCAGC | 5 cut(s) | 467, 482, 1243, 1806, 1842 |
| BseYI | CCCAGC | 1 cut(s) | 3120 |
| BsgI | GTGCAG | 1 cut(s) | 1858 |
| Bsh1236I | CGCG | 4 cut(s) | 103, 1596, 2625, 2966 |
| BshFI | GGCC | 7 cut(s) | 120, 384, 1463, 2043, 2152, 2262, 2642 |
| BshTI | ACCGGT | 1 cut(s) | 2410 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1660, 2654, 2758 |
| BsiSI | CCGG | 2 cut(s) | 1139, 2411 |
| BslFI | GGGAC | 3 cut(s) | 788, 1854, 2882 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 23, 910, 1436, 1459, 1783, 2038, 2039 |
| BsmAI | GTCTC | 7 cut(s) | 1445, 1551, 2051, 2062, 2175, 2611, 2692 |
| BsmBI | CGTCTC | 1 cut(s) | 2051 |
| BsmFI | GGGAC | 3 cut(s) | 788, 1854, 2882 |
| BsmI | GAATGC | 1 cut(s) | 2465 |
| BsnI | GGCC | 7 cut(s) | 120, 384, 1463, 2043, 2152, 2262, 2642 |
| Bso31I | GGTCTC | 1 cut(s) | 1445 |
| Bsp119I | TTCGAA | 1 cut(s) | 2546 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1660, 2654, 2758 |
| Bsp13I | TCCGGA | 1 cut(s) | 1138 |
| Bsp1407I | TGTACA | 1 cut(s) | 126 |
| Bsp68I | TCGCGA | 1 cut(s) | 1596 |
| BspANI | GGCC | 7 cut(s) | 120, 384, 1463, 2043, 2152, 2262, 2642 |
| BspCNI | CTCAG | 5 cut(s) | 72, 1156, 2255, 2445, 2607 |
| BspEI | TCCGGA | 1 cut(s) | 1138 |
| BspFNI | CGCG | 4 cut(s) | 103, 1596, 2625, 2966 |
| BspLI | GGNNCC | 3 cut(s) | 28, 1787, 1870 |
| BspMI | ACCTGC | 1 cut(s) | 2786 |
| BspPI | GGATC | 5 cut(s) | 350, 954, 1421, 2283, 2352 |
| BspQI | GCTCTTC | 3 cut(s) | 1109, 2642, 2820 |
| BspT104I | TTCGAA | 1 cut(s) | 2546 |
| BspTNI | GGTCTC | 1 cut(s) | 1445 |
| BsrFI | RCCGGY | 1 cut(s) | 2410 |
| BsrGI | TGTACA | 1 cut(s) | 126 |
| BsrI | ACTGG | 4 cut(s) | 1777, 1799, 2263, 2774 |
| BssAI | RCCGGY | 1 cut(s) | 2410 |
| BssECI | CCNNGG | 2 cut(s) | 2271, 2964 |
| BssSI | CACGAG | 2 cut(s) | 1548, 2493 |
| BssT1I | CCWWGG | 1 cut(s) | 2271 |
| Bst2BI | CACGAG | 2 cut(s) | 1548, 2493 |
| Bst2UI | CCWGG | 2 cut(s) | 1994, 2907 |
| Bst4CI | ACNGT | 4 cut(s) | 1575, 1680, 2358, 3010 |
| Bst6I | CTCTTC | 5 cut(s) | 37, 43, 1109, 2642, 2820 |
| BstAUI | TGTACA | 1 cut(s) | 126 |
| BstBAI | YACGTR | 1 cut(s) | 626 |
| BstBI | TTCGAA | 1 cut(s) | 2546 |
| BstC8I | GCNNGC | 2 cut(s) | 406, 3118 |
| BstDSI | CCRYGG | 1 cut(s) | 2964 |
| BstFNI | CGCG | 4 cut(s) | 103, 1596, 2625, 2966 |
| BstH2I | RGCGCY | 1 cut(s) | 1939 |
| BstHHI | GCGC | 2 cut(s) | 105, 1938 |
| BstMAI | GTCTC | 7 cut(s) | 1445, 1551, 2051, 2062, 2175, 2611, 2692 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 260, 1389 |
| BstNI | CCWGG | 2 cut(s) | 1994, 2907 |
| BstNSI | RCATGY | 3 cut(s) | 1037, 1368, 1983 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 657 |
| BstSCI | CCNGG | 2 cut(s) | 1992, 2905 |
| BstSFI | CTRYAG | 1 cut(s) | 2354 |
| BstSNI | TACGTA | 1 cut(s) | 626 |
| BstUI | CGCG | 4 cut(s) | 103, 1596, 2625, 2966 |
| BstV1I | GCAGC | 5 cut(s) | 467, 482, 1243, 1806, 1842 |
| BstV2I | GAAGAC | 1 cut(s) | 624 |
| BstX2I | RGATCY | 4 cut(s) | 355, 796, 2275, 2344 |
| BstYI | RGATCY | 4 cut(s) | 355, 796, 2275, 2344 |
| Bsu36I | CCTNAGG | 1 cut(s) | 852 |
| BsuI | GTATCC | 2 cut(s) | 91, 2913 |
| BsuRI | GGCC | 7 cut(s) | 120, 384, 1463, 2043, 2152, 2262, 2642 |
| BtgI | CCRYGG | 1 cut(s) | 2964 |
| BtsIMutI | CAGTG | 1 cut(s) | 2256 |
| BtuMI | TCGCGA | 1 cut(s) | 1596 |
| BveI | ACCTGC | 1 cut(s) | 2786 |
| Cac8I | GCNNGC | 2 cut(s) | 406, 3118 |
| CfoI | GCGC | 2 cut(s) | 105, 1938 |
| Cfr10I | RCCGGY | 1 cut(s) | 2410 |
| Cfr13I | GGNCC | 7 cut(s) | 382, 986, 1600, 1786, 1868, 1996, 2041 |
| Cfr42I | CCGCGG | 1 cut(s) | 2967 |
| CseI | GACGC | 1 cut(s) | 768 |
| Csp6I | GTAC | 5 cut(s) | 127, 634, 1406, 2306, 2359 |
| CspAI | ACCGGT | 1 cut(s) | 2410 |
| CviQI | GTAC | 5 cut(s) | 127, 634, 1406, 2306, 2359 |
| DraI | TTTAAA | 2 cut(s) | 576, 1113 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2188 |
| EaeI | YGGCCR | 2 cut(s) | 2150, 2640 |
| Eam1104I | CTCTTC | 5 cut(s) | 37, 43, 1109, 2642, 2820 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2188 |
| EarI | CTCTTC | 5 cut(s) | 37, 43, 1109, 2642, 2820 |
| EciI | GGCGGA | 2 cut(s) | 702, 1704 |
| Ecl136II | GAGCTC | 1 cut(s) | 1658 |
| Eco105I | TACGTA | 1 cut(s) | 626 |
| Eco130I | CCWWGG | 1 cut(s) | 2271 |
| Eco147I | AGGCCT | 1 cut(s) | 1463 |
| Eco24I | GRGCYC | 1 cut(s) | 1660 |
| Eco31I | GGTCTC | 1 cut(s) | 1445 |
| Eco32I | GATATC | 1 cut(s) | 546 |
| Eco47I | GGWCC | 5 cut(s) | 986, 1600, 1786, 1868, 1996 |
| Eco53kI | GAGCTC | 1 cut(s) | 1658 |
| Eco57I | CTGAAG | 3 cut(s) | 70, 891, 2745 |
| Eco81I | CCTNAGG | 1 cut(s) | 852 |
| EcoICRI | GAGCTC | 1 cut(s) | 1658 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1600, 1786 |
| EcoRI | GAATTC | 2 cut(s) | 1956, 2729 |
| EcoRII | CCWGG | 2 cut(s) | 1992, 2905 |
| EcoRV | GATATC | 1 cut(s) | 546 |
| EcoT14I | CCWWGG | 1 cut(s) | 2271 |
| EcoT22I | ATGCAT | 2 cut(s) | 265, 1503 |
| EcoT38I | GRGCYC | 1 cut(s) | 1660 |
| ErhI | CCWWGG | 1 cut(s) | 2271 |
| Esp3I | CGTCTC | 1 cut(s) | 2051 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 263, 295, 413, 445, 620, 652 |
| FaqI | GGGAC | 3 cut(s) | 788, 1854, 2882 |
| FauI | CCCGC | 2 cut(s) | 813, 2959 |
| FauNDI | CATATG | 1 cut(s) | 67 |
| FbaI | TGATCA | 2 cut(s) | 1333, 2109 |
| FblI | GTMKAC | 2 cut(s) | 1570, 3160 |
| Fnu4HI | GCNGC | 7 cut(s) | 456, 471, 1257, 1820, 1856, 2153, 3041 |
| FriOI | GRGCYC | 1 cut(s) | 1660 |
| Fsp4HI | GCNGC | 7 cut(s) | 456, 471, 1257, 1820, 1856, 2153, 3041 |
| FspBI | CTAG | 1 cut(s) | 2279 |
| GlaI | GCGC | 2 cut(s) | 104, 1937 |
| GluI | GCNGC | 7 cut(s) | 456, 471, 1257, 1820, 1856, 2153, 3041 |
| GsaI | CCCAGC | 1 cut(s) | 3124 |
| GsuI | CTGGAG | 3 cut(s) | 987, 2075, 2360 |
| HaeII | RGCGCY | 1 cut(s) | 1939 |
| HaeIII | GGCC | 7 cut(s) | 120, 384, 1463, 2043, 2152, 2262, 2642 |
| HapII | CCGG | 2 cut(s) | 1139, 2411 |
| HgaI | GACGC | 1 cut(s) | 768 |
| HhaI | GCGC | 2 cut(s) | 105, 1938 |
| Hin6I | GCGC | 2 cut(s) | 103, 1936 |
| HinP1I | GCGC | 2 cut(s) | 103, 1936 |
| HincII | GTYRAC | 3 cut(s) | 702, 2029, 3161 |
| HindII | GTYRAC | 3 cut(s) | 702, 2029, 3161 |
| HindIII | AAGCTT | 2 cut(s) | 1693, 2369 |
| HpaII | CCGG | 2 cut(s) | 1139, 2411 |
| HphI | GGTGA | 4 cut(s) | 404, 2119, 2603, 2767 |
| Hpy166II | GTNNAC | 9 cut(s) | 334, 702, 937, 1571, 2029, 2775, 2929, 3130, 3161 |
| Hpy8I | GTNNAC | 9 cut(s) | 334, 702, 937, 1571, 2029, 2775, 2929, 3130, 3161 |
| Hpy99I | CGWCG | 2 cut(s) | 364, 3165 |
| HpyCH4III | ACNGT | 4 cut(s) | 1575, 1680, 2358, 3010 |
| HpyCH4IV | ACGT | 4 cut(s) | 387, 625, 1564, 2335 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 260, 1389 |
| HpySE526I | ACGT | 4 cut(s) | 387, 625, 1564, 2335 |
| HspAI | GCGC | 2 cut(s) | 103, 1936 |
| Kpn2I | TCCGGA | 1 cut(s) | 1138 |
| Ksp22I | TGATCA | 2 cut(s) | 1333, 2109 |
| KspI | CCGCGG | 1 cut(s) | 2967 |
| LguI | GCTCTTC | 3 cut(s) | 1109, 2642, 2820 |
| LmnI | GCTCC | 5 cut(s) | 26, 889, 2094, 2467, 2761 |
| Lsp1109I | GCAGC | 5 cut(s) | 467, 482, 1243, 1806, 1842 |
| LweI | GCATC | 5 cut(s) | 272, 1081, 1488, 1731, 3027 |
| MaeI | CTAG | 1 cut(s) | 2279 |
| MaeII | ACGT | 4 cut(s) | 387, 625, 1564, 2335 |
| MaeIII | GTNAC | 6 cut(s) | 659, 1316, 1418, 2232, 2374, 3004 |
| MfeI | CAATTG | 2 cut(s) | 399, 2863 |
| MflI | RGATCY | 4 cut(s) | 355, 796, 2275, 2344 |
| MhlI | GDGCHC | 3 cut(s) | 1660, 2654, 2758 |
| MlsI | TGGCCA | 1 cut(s) | 2642 |
| MluNI | TGGCCA | 1 cut(s) | 2642 |
| MlyI | GAGTC | 6 cut(s) | 1553, 1873, 2064, 2537, 2613, 3135 |
| MmeI | TCCRAC | 7 cut(s) | 75, 342, 577, 867, 1797, 2227, 2408 |
| Mox20I | TGGCCA | 1 cut(s) | 2642 |
| Mph1103I | ATGCAT | 2 cut(s) | 265, 1503 |
| MroI | TCCGGA | 1 cut(s) | 1138 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1350, 1533, 2400 |
| MscI | TGGCCA | 1 cut(s) | 2642 |
| MslI | CAYNNNNRTG | 3 cut(s) | 390, 1038, 1089 |
| Msp20I | TGGCCA | 1 cut(s) | 2642 |
| MspA1I | CMGCKG | 1 cut(s) | 2966 |
| MspI | CCGG | 2 cut(s) | 1139, 2411 |
| MspR9I | CCNGG | 2 cut(s) | 1994, 2907 |
| MunI | CAATTG | 2 cut(s) | 399, 2863 |
| Mva1269I | GAATGC | 1 cut(s) | 2465 |
| MvaI | CCWGG | 2 cut(s) | 1994, 2907 |
| MvnI | CGCG | 4 cut(s) | 103, 1596, 2625, 2966 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 260, 1389 |
| NdeI | CATATG | 1 cut(s) | 67 |
| NlaIV | GGNNCC | 3 cut(s) | 28, 1787, 1870 |
| NmuCI | GTSAC | 2 cut(s) | 659, 1418 |
| NruI | TCGCGA | 1 cut(s) | 1596 |
| NsiI | ATGCAT | 2 cut(s) | 265, 1503 |
| NspI | RCATGY | 3 cut(s) | 1037, 1368, 1983 |
| NspV | TTCGAA | 1 cut(s) | 2546 |
| OliI | CACNNNNGTG | 1 cut(s) | 390 |
| PaqCI | CACCTGC | 1 cut(s) | 2786 |
| PceI | AGGCCT | 1 cut(s) | 1463 |
| PciSI | GCTCTTC | 3 cut(s) | 1109, 2642, 2820 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1823, 2055 |
| PctI | GAATGC | 1 cut(s) | 2465 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1350, 1533, 2400 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1436 |
| PinAI | ACCGGT | 1 cut(s) | 2410 |
| PkrI | GCNGC | 7 cut(s) | 457, 472, 1258, 1821, 1857, 2154, 3042 |
| PleI | GAGTC | 6 cut(s) | 1552, 1873, 2064, 2536, 2613, 3134 |
| PpsI | GAGTC | 6 cut(s) | 1552, 1873, 2064, 2536, 2613, 3134 |
| Ppu21I | YACGTR | 1 cut(s) | 626 |
| PpuMI | RGGWCCY | 2 cut(s) | 1600, 1786 |
| PshAI | GACNNNNGTC | 1 cut(s) | 657 |
| PshBI | ATTAAT | 1 cut(s) | 215 |
| PsiI | TTATAA | 2 cut(s) | 723, 2292 |
| Psp124BI | GAGCTC | 1 cut(s) | 1660 |
| Psp5II | RGGWCCY | 2 cut(s) | 1600, 1786 |
| Psp6I | CCWGG | 2 cut(s) | 1992, 2905 |
| PspFI | CCCAGC | 1 cut(s) | 3120 |
| PspGI | CCWGG | 2 cut(s) | 1992, 2905 |
| PspN4I | GGNNCC | 3 cut(s) | 28, 1787, 1870 |
| PspPI | GGNCC | 7 cut(s) | 382, 986, 1600, 1786, 1868, 1996, 2041 |
| PspPPI | RGGWCCY | 2 cut(s) | 1600, 1786 |
| PsuI | RGATCY | 4 cut(s) | 355, 796, 2275, 2344 |
| RruI | TCGCGA | 1 cut(s) | 1596 |
| RsaI | GTAC | 5 cut(s) | 128, 635, 1407, 2307, 2360 |
| RsaNI | GTAC | 5 cut(s) | 127, 634, 1406, 2306, 2359 |
| RseI | CAYNNNNRTG | 3 cut(s) | 390, 1038, 1089 |
| SacI | GAGCTC | 1 cut(s) | 1660 |
| SacII | CCGCGG | 1 cut(s) | 2967 |
| SalI | GTCGAC | 1 cut(s) | 3159 |
| SapI | GCTCTTC | 3 cut(s) | 1109, 2642, 2820 |
| SatI | GCNGC | 7 cut(s) | 456, 471, 1257, 1820, 1856, 2153, 3041 |
| Sau96I | GGNCC | 7 cut(s) | 382, 986, 1600, 1786, 1868, 1996, 2041 |
| ScaI | AGTACT | 2 cut(s) | 635, 2360 |
| SchI | GAGTC | 6 cut(s) | 1553, 1873, 2064, 2537, 2613, 3135 |
| ScrFI | CCNGG | 2 cut(s) | 1994, 2907 |
| SduI | GDGCHC | 3 cut(s) | 1660, 2654, 2758 |
| SfaNI | GCATC | 5 cut(s) | 272, 1081, 1488, 1731, 3027 |
| SfcI | CTRYAG | 1 cut(s) | 2354 |
| Sfr303I | CCGCGG | 1 cut(s) | 2967 |
| SfuI | TTCGAA | 1 cut(s) | 2546 |
| SgrBI | CCGCGG | 1 cut(s) | 2967 |
| SinI | GGWCC | 5 cut(s) | 986, 1600, 1786, 1868, 1996 |
| SmiI | ATTTAAAT | 1 cut(s) | 1113 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 390, 1038, 1089 |
| SmlI | CTYRAG | 4 cut(s) | 760, 1604, 2072, 2156 |
| SmoI | CTYRAG | 4 cut(s) | 760, 1604, 2072, 2156 |
| SnaBI | TACGTA | 1 cut(s) | 626 |
| SseBI | AGGCCT | 1 cut(s) | 1463 |
| SspI | AATATT | 1 cut(s) | 2560 |
| SspMI | CTAG | 1 cut(s) | 2279 |
| SstI | GAGCTC | 1 cut(s) | 1660 |
| StuI | AGGCCT | 1 cut(s) | 1463 |
| StyD4I | CCNGG | 2 cut(s) | 1992, 2905 |
| StyI | CCWWGG | 1 cut(s) | 2271 |
| SwaI | ATTTAAAT | 1 cut(s) | 1113 |
| TaaI | ACNGT | 4 cut(s) | 1575, 1680, 2358, 3010 |
| TaiI | ACGT | 4 cut(s) | 390, 628, 1567, 2338 |
| TaqI | TCGA | 8 cut(s) | 210, 1425, 2049, 2312, 2546, 3058, 3138, 3160 |
| TatI | WGTACW | 4 cut(s) | 126, 633, 1405, 2358 |
| TauI | GCSGC | 2 cut(s) | 2155, 3043 |
| TscAI | CASTG | 1 cut(s) | 2263 |
| TseFI | GTSAC | 2 cut(s) | 659, 1418 |
| TseI | GCWGC | 5 cut(s) | 455, 470, 1256, 1819, 1855 |
| Tsp45I | GTSAC | 2 cut(s) | 659, 1418 |
| TspDTI | ATGAA | 9 cut(s) | 48, 151, 300, 525, 543, 575, 1346, 1797, 2660 |
| TspGWI | ACGGA | 4 cut(s) | 226, 348, 1182, 1637 |
| TspRI | CASTG | 1 cut(s) | 2263 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1436 |
| VpaK11BI | GGWCC | 5 cut(s) | 986, 1600, 1786, 1868, 1996 |
| VspI | ATTAAT | 1 cut(s) | 215 |
| XbaI | TCTAGA | 1 cut(s) | 2278 |
| XceI | RCATGY | 3 cut(s) | 1037, 1368, 1983 |
| XmiI | GTMKAC | 2 cut(s) | 1570, 3160 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1350, 1533, 2400 |
| XspI | CTAG | 1 cut(s) | 2279 |
| ZrmI | AGTACT | 2 cut(s) | 635, 2360 |
| Zsp2I | ATGCAT | 2 cut(s) | 265, 1503 |