Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0000790

Physical Location & Seq

Genomic Coordinates Reverse (-)

10872715 .. 10873179

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1088100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGACATGATCGTTACGAGTCCCAAGAGACTCATGAAAATGGCTAGGAAATTGCAGAAGACAGCTGATATGGGGAGGAAGAAAATTTCAAACCCAAGAGTAGTTGGTAACAACTCCAATAATACAGACTGCAACTCGATGGGCGAAAAGGGTACTTTTGTCATCTACACTGTTGATAAGAAGCGTTACGTGCTACCATTATCTTATCTGCATAACTGCATTTTCCAAAAGCTTTTTAAGCTGTCCGAAGAAGAATTTGGACTCTCAAGTAGTAGGCCTATCATCGTGCCATGTGACTCGCTCTTCATGAATTACATAGTCTCACTCTTCCAACGTGGAATAACTACGGATTTGGAGAAAGCTGTACTGATCAACTCTACCATTAGTAGTAGCTGCTTCATTGGTTCTACTAATTTATATAAAGGCAAAACAGGACAACAATTACGAGTCCTTTCCGGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

155

Amino Acids

17.35

Weight (kDa)

9.7

Isoelectric Point (pI)

29.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	9 - 109	2.6e-24	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29420 AT1G29420 AT1G29430 AT1G29440 AT1G29450 AT1G29450 AT1G29460 AT1G29460 AT1G29490 AT1G29500 AT1G29510 AT5G27780
fragaria_vesca	FvH4_6g27350
malus_domestica	MD07G1151400.v1.1 MD12G1088000.v1.1 MD12G1088100.v1.1 MD12G1088200.v1.1
prunus_persica	Prupe.7G048400_v2.0.a1 Prupe.7G048500_v2.0.a1 Prupe.7G048600_v2.0.a1
pyrus_communis	pycom12g07490 pycom12g07500
rosa_chinensis	RchiOBHm_Chr2g0129571 RchiOBHm_Chr2g0129581 RchiOBHm_Chr2g0131961 RchiOBHm_Chr2g0131971 RchiOBHm_Chr2g0131981
rosa_laevigata	RLG00000019088 RLG00000019089 RLG00000019220 RLG00000019221
rosa_multiflora	Rmu_sc0000584.1_g000015 Rmu_sc0000584.1_g000016 Rmu_sc0000584.1_g000020 Rmu_sc0000999.1_g000048
rosa_roxburghii	Rroxscaffold_2G00112430 Rroxscaffold_2G00112440 Rroxscaffold_2G00114520
rosa_rugosa	Rorug02G0287200 Rorug02G0287300 Rorug02G0287400 Rorug02G0301300 Rorug02G0301400 Rorug02G0301500 Rorug02G0301600
rosa_samantha	Rh2AG338800 Rh2AG338900 Rh2AG339000 Rh2AG353000 Rh2BG347600 Rh2BG347700 Rh2BG360400 Rh2BG360500 Rh2BG360600 Rh2CG326200 Rh2CG326300 Rh2CG326400 Rh2CG338300 Rh2DG366000 Rh2DG366100 Rh2DG377300 Rh2DG377400 Rh7DG159500 Rh7DG377700
rosa_wichuraiana	Rw2G028020 Rw2G028030 Rw2G028760 Rw2G028770 Rw2G028790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	84, 254
AfaI	GTAC	2 cut(s)	154, 366
AgsI	TTSAA	1 cut(s)	90
AjuI	GAANNNNNNNTTGG	2 cut(s)	240, 272
AluBI	AGCT	5 cut(s)	65, 232, 241, 362, 393
AluI	AGCT	5 cut(s)	65, 232, 241, 362, 393
Alw26I	GTCTC	2 cut(s)	22, 325
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	1 cut(s)	393
ApoI	RAATTY	2 cut(s)	84, 254
BaeI	ACNNNNGTAYC	2 cut(s)	144, 177
BbsI	GAAGAC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	380
BccI	CCATC	1 cut(s)	133
BclI	TGATCA	1 cut(s)	369
BcoDI	GTCTC	2 cut(s)	22, 325
BfaI	CTAG	1 cut(s)	45
BisI	GCNGC	1 cut(s)	394
BlsI	GCNGC	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	250
BsaAI	YACGTR	1 cut(s)	190
BsaWI	WCCGGW	1 cut(s)	455
BseXI	GCAGC	1 cut(s)	380
BshFI	GGCC	1 cut(s)	277
BsiSI	CCGG	1 cut(s)	456
BslFI	GGGAC	1 cut(s)	6
BsmAI	GTCTC	2 cut(s)	22, 325
BsmFI	GGGAC	1 cut(s)	6
BsnI	GGCC	1 cut(s)	277
Bsp143I	GATC	2 cut(s)	9, 369
BspANI	GGCC	1 cut(s)	277
BspHI	TCATGA	2 cut(s)	33, 306
BspQI	GCTCTTC	1 cut(s)	308
BssMI	GATC	2 cut(s)	9, 369
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	2 cut(s)	308, 332
BstBAI	YACGTR	1 cut(s)	190
BstKTI	GATC	2 cut(s)	12, 372
BstMAI	GTCTC	2 cut(s)	22, 325
BstMBI	GATC	2 cut(s)	9, 369
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 238
BstV1I	GCAGC	1 cut(s)	380
BstV2I	GAAGAC	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	168
CciI	TCATGA	2 cut(s)	33, 306
Csp6I	GTAC	2 cut(s)	153, 365
CviAII	CATG	4 cut(s)	7, 34, 291, 307
CviJI	RGCY	7 cut(s)	44, 65, 232, 241, 277, 362, 393
CviKI_1	RGCY	7 cut(s)	44, 65, 232, 241, 277, 362, 393
CviQI	GTAC	2 cut(s)	153, 365
DpnI	GATC	2 cut(s)	11, 371
DpnII	GATC	2 cut(s)	9, 369
Eam1104I	CTCTTC	2 cut(s)	308, 332
EarI	CTCTTC	2 cut(s)	308, 332
Eco147I	AGGCCT	1 cut(s)	277
FaeI	CATG	4 cut(s)	10, 37, 294, 310
FaiI	YATR	9 cut(s)	8, 35, 71, 213, 292, 308, 317, 418, 420
FaqI	GGGAC	1 cut(s)	6
FatI	CATG	4 cut(s)	6, 33, 290, 306
FbaI	TGATCA	1 cut(s)	369
Fnu4HI	GCNGC	1 cut(s)	394
Fsp4HI	GCNGC	1 cut(s)	394
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	1 cut(s)	394
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	1 cut(s)	456
Hin1II	CATG	4 cut(s)	10, 37, 294, 310
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	5 cut(s)	19, 30, 261, 296, 447
HpaII	CCGG	1 cut(s)	456
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	2 cut(s)	34, 307
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	2 cut(s)	189, 334
HpyCH4V	TGCA	4 cut(s)	55, 132, 211, 219
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 238
HpySE526I	ACGT	2 cut(s)	189, 334
Hsp92II	CATG	4 cut(s)	10, 37, 294, 310
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	2 cut(s)	9, 369
LguI	GCTCTTC	1 cut(s)	308
LpnPI	CCDG	1 cut(s)	417
Lsp1109I	GCAGC	1 cut(s)	380
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	2 cut(s)	189, 334
MaeIII	GTNAC	5 cut(s)	13, 107, 185, 293, 458
MalI	GATC	2 cut(s)	11, 371
MboI	GATC	2 cut(s)	9, 369
MboII	GAAGA	6 cut(s)	70, 91, 260, 263, 295, 319
MluCI	AATT	6 cut(s)	50, 84, 254, 310, 412, 440
MlyI	GAGTC	5 cut(s)	24, 28, 255, 290, 456
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	1 cut(s)	69
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	1 cut(s)	456
MwoI	GCNNNNNNNGC	2 cut(s)	190, 238
NdeII	GATC	2 cut(s)	9, 369
NlaIII	CATG	4 cut(s)	10, 37, 294, 310
NmuCI	GTSAC	1 cut(s)	293
PagI	TCATGA	2 cut(s)	33, 306
PceI	AGGCCT	1 cut(s)	277
PciSI	GCTCTTC	1 cut(s)	308
PkrI	GCNGC	1 cut(s)	395
PleI	GAGTC	5 cut(s)	24, 27, 255, 290, 455
PpsI	GAGTC	5 cut(s)	24, 27, 255, 290, 455
Ppu21I	YACGTR	1 cut(s)	190
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	2 cut(s)	154, 366
RsaNI	GTAC	2 cut(s)	153, 365
RseI	CAYNNNNRTG	1 cut(s)	38
SapI	GCTCTTC	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	1 cut(s)	394
Sau3AI	GATC	2 cut(s)	9, 369
SchI	GAGTC	5 cut(s)	24, 28, 255, 290, 456
SetI	ASST	7 cut(s)	67, 192, 234, 243, 337, 364, 395
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	6 cut(s)	50, 84, 254, 310, 412, 440
SseBI	AGGCCT	1 cut(s)	277
SspMI	CTAG	1 cut(s)	45
StuI	AGGCCT	1 cut(s)	277
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	2 cut(s)	192, 337
TaqI	TCGA	1 cut(s)	137
TasI	AATT	6 cut(s)	50, 84, 254, 310, 412, 440
TatI	WGTACW	1 cut(s)	364
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	1 cut(s)	393
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	4 cut(s)	50, 295, 323, 388
TspGWI	ACGGA	1 cut(s)	362
TspRI	CASTG	1 cut(s)	175
XapI	RAATTY	2 cut(s)	84, 254
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.