RchiOBHm_Chr2g0131961

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000790
Physical Location & Seq
Forward (+)
48361842 .. 48362321
480 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50326

Sequence Viewer

Length: 480 bp
ATGGACGTGATGCTCAGCCCGAAGAAGCTCATCAAAATGACCAAGAAGTTGCAGAAGGTACCTGTTATTGGGAGGAAGAGAACTTCACCCCCAACAGTCATTGGCAGTAACAAGATGAATAGTACTACAGCAGATAAGGGCACTTTTGTCATCTACACCCTTGACAAGAGACGTTTTATGCTTCCTTTATCCTATCTCTGCAACCACATTTTCCAAGAGCTCTTTAAGATGTCTGAAGAAGAGTTAGGAATATCGAGAAGCGGTCCTATCGTACTCCCGTGCGATTCACTCCTAGTGAATTATATAGTCTCACTTGTTCAGCTTGGAATGAGTATAGAAGTGGAGAAAGCTATACTCAATTCTATTATTAGGCTTAGGAGTAGCTACTTCTTGTCTACTCCAGACAAACCAACAATTACTCCTTTGTGGTTTCTGAATAGATCAGGTCTATGTTGTACGTATATAGTTAGATTTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

159

Amino Acids

18.1

Weight (kDa)

9.76

Isoelectric Point (pI)

65.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 8 - 105 1.6e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 58
AccB1I GGYRCC 1 cut(s) 58
AccI GTMKAC 1 cut(s) 395
AciI CCGC 1 cut(s) 261
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 4 cut(s) 60, 124, 273, 457
AfiI CCNNNNNNNGG 1 cut(s) 68
AjiI CACGTC 1 cut(s) 7
AluBI AGCT 5 cut(s) 28, 220, 322, 350, 384
AluI AGCT 5 cut(s) 28, 220, 322, 350, 384
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 2 cut(s) 163, 313
Asp718I GGTACC 1 cut(s) 58
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 78
AvaII GGWCC 1 cut(s) 263
BaeGI GKGCMC 1 cut(s) 143
BanI GGYRCC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 222
BcoDI GTCTC 2 cut(s) 163, 313
BfaI CTAG 2 cut(s) 293, 478
BfmI CTRYAG 1 cut(s) 126
BlpI GCTNAGC 1 cut(s) 14
BmcAI AGTACT 1 cut(s) 124
Bme18I GGWCC 1 cut(s) 263
BmgBI CACGTC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 384
Bpu10I CCTNAGC 1 cut(s) 374
Bpu1102I GCTNAGC 1 cut(s) 14
BsaAI YACGTR 1 cut(s) 459
BsaXI ACNNNNNCTCC 2 cut(s) 403, 433
Bsc4I CCNNNNNNNGG 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 28
BseSI GKGCMC 1 cut(s) 143
BshNI GGYRCC 1 cut(s) 58
BsiHKAI GWGCWC 1 cut(s) 222
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 2 cut(s) 163, 313
BsmBI CGTCTC 1 cut(s) 163
Bsp1286I GDGCHC 2 cut(s) 143, 222
Bsp143I GATC 1 cut(s) 440
Bsp1720I GCTNAGC 1 cut(s) 14
BspACI CCGC 1 cut(s) 261
BspCNI CTCAG 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 60
BspT107I GGYRCC 1 cut(s) 58
BssMI GATC 1 cut(s) 440
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 2 cut(s) 71, 234
BstBAI YACGTR 1 cut(s) 459
BstDEI CTNAG 2 cut(s) 14, 374
BstKTI GATC 1 cut(s) 443
BstMAI GTCTC 2 cut(s) 163, 313
BstMBI GATC 1 cut(s) 440
BstSFI CTRYAG 1 cut(s) 126
BstSLI GKGCMC 1 cut(s) 143
BstSNI TACGTA 1 cut(s) 459
BtrI CACGTC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 4 cut(s) 59, 123, 272, 456
CviJI RGCY 7 cut(s) 18, 28, 220, 322, 350, 373, 384
CviKI_1 RGCY 7 cut(s) 18, 28, 220, 322, 350, 373, 384
CviQI GTAC 4 cut(s) 59, 123, 272, 456
DdeI CTNAG 2 cut(s) 14, 374
DpnI GATC 1 cut(s) 442
DpnII GATC 1 cut(s) 440
Eam1104I CTCTTC 2 cut(s) 71, 234
EarI CTCTTC 2 cut(s) 71, 234
Ecl136II GAGCTC 1 cut(s) 220
Eco105I TACGTA 1 cut(s) 459
Eco24I GRGCYC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 222
Esp3I CGTCTC 1 cut(s) 163
FaiI YATR 8 cut(s) 179, 303, 305, 335, 353, 451, 462, 464
FblI GTMKAC 1 cut(s) 395
FriOI GRGCYC 1 cut(s) 222
FspBI CTAG 2 cut(s) 293, 478
GsuI CTGGAG 1 cut(s) 384
HinfI GANTC 1 cut(s) 284
HphI GGTGA 1 cut(s) 78
Hpy166II GTNNAC 1 cut(s) 396
Hpy188I TCNGA 2 cut(s) 235, 435
Hpy188III TCNNGA 2 cut(s) 255, 401
Hpy8I GTNNAC 1 cut(s) 396
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 3 cut(s) 6, 172, 458
HpyCH4V TGCA 2 cut(s) 52, 201
HpyF3I CTNAG 2 cut(s) 14, 374
HpySE526I ACGT 3 cut(s) 6, 172, 458
KpnI GGTACC 1 cut(s) 62
Kzo9I GATC 1 cut(s) 440
LpnPI CCDG 3 cut(s) 75, 414, 429
MaeI CTAG 2 cut(s) 293, 478
MaeII ACGT 3 cut(s) 6, 172, 458
MaeIII GTNAC 1 cut(s) 107
MalI GATC 1 cut(s) 442
MboI GATC 1 cut(s) 440
MboII GAAGA 4 cut(s) 34, 88, 248, 251
MhlI GDGCHC 2 cut(s) 143, 222
MluCI AATT 3 cut(s) 298, 358, 414
MnlI CCTC 1 cut(s) 66
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 1 cut(s) 35
NdeII GATC 1 cut(s) 440
NlaIV GGNNCC 1 cut(s) 60
PfeI GAWTC 1 cut(s) 284
Ppu21I YACGTR 1 cut(s) 459
Psp124BI GAGCTC 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 263
RsaI GTAC 4 cut(s) 60, 124, 273, 457
RsaNI GTAC 4 cut(s) 59, 123, 272, 456
RseI CAYNNNNRTG 1 cut(s) 35
SacI GAGCTC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 225
Sau3AI GATC 1 cut(s) 440
Sau96I GGNCC 1 cut(s) 263
ScaI AGTACT 1 cut(s) 124
SduI GDGCHC 2 cut(s) 143, 222
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 35
SnaBI TACGTA 1 cut(s) 459
Sse9I AATT 3 cut(s) 298, 358, 414
SsiI CCGC 1 cut(s) 261
SspMI CTAG 2 cut(s) 293, 478
SstI GAGCTC 1 cut(s) 222
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 3 cut(s) 9, 175, 461
TaqI TCGA 1 cut(s) 254
TasI AATT 3 cut(s) 298, 358, 414
TatI WGTACW 1 cut(s) 122
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TspDTI ATGAA 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 395
XspI CTAG 2 cut(s) 293, 478
ZrmI AGTACT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.