Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000790

Physical Location & Seq

Genomic Coordinates Forward (+)

10321011 .. 10321978

Gene Structure 968 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G29500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGATGAACACAAAGAAGCTAATCAAGATGTTCAGGAAATGGCAACAGAGAGCAGCTCTCCACAGGAAAAGAATCTCATTCCAAAGACCAAGTACCCGCTCAACCACTGTAGAGAAGGGATGCTTTGTCGTTTACACGGCGGACAACACACGCTTTGCTTTTCCGATAAGCTACCTAAGCAACTCTGTATTTCAAGAGATTTTGGAGATATCTGAAGAAGAGTTTGGCCTCCCAACCGGTGGACCAATCACATTACCATTCGATTCGGTTTTTTTGGAGTATCTCATCAAATTGATCAAAAGACGAATGGATGGAGATACAGAAAAGGCTTTGTTAATGTCAATCTCTAGTGCTAGATGTTCTTTGCAAAAACAAGAACAGAGTACTCAACAATTGCTTGTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006810 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009914 GO:0009926 GO:0010817 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046620 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0080086 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

135

Amino Acids

15.66

Weight (kDa)

9.69

Isoelectric Point (pI)

58.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	5 - 99	2.2e-27	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29420 AT1G29420 AT1G29430 AT1G29440 AT1G29450 AT1G29450 AT1G29460 AT1G29460 AT1G29490 AT1G29500 AT1G29510 AT5G27780
fragaria_vesca	FvH4_6g27350
malus_domestica	MD07G1151400.v1.1 MD12G1088000.v1.1 MD12G1088100.v1.1 MD12G1088200.v1.1
prunus_persica	Prupe.7G048400_v2.0.a1 Prupe.7G048500_v2.0.a1 Prupe.7G048600_v2.0.a1
pyrus_communis	pycom12g07490 pycom12g07500
rosa_chinensis	RchiOBHm_Chr2g0129571 RchiOBHm_Chr2g0129581 RchiOBHm_Chr2g0131961 RchiOBHm_Chr2g0131971 RchiOBHm_Chr2g0131981
rosa_laevigata	RLG00000019088 RLG00000019089 RLG00000019220 RLG00000019221
rosa_multiflora	Rmu_sc0000584.1_g000015 Rmu_sc0000584.1_g000016 Rmu_sc0000584.1_g000020 Rmu_sc0000999.1_g000048
rosa_roxburghii	Rroxscaffold_2G00112430 Rroxscaffold_2G00112440 Rroxscaffold_2G00114520
rosa_rugosa	Rorug02G0287200 Rorug02G0287300 Rorug02G0287400 Rorug02G0301300 Rorug02G0301400 Rorug02G0301500 Rorug02G0301600
rosa_samantha	Rh2AG338800 Rh2AG338900 Rh2AG339000 Rh2AG353000 Rh2BG347600 Rh2BG347700 Rh2BG360400 Rh2BG360500 Rh2BG360600 Rh2CG326200 Rh2CG326300 Rh2CG326400 Rh2CG338300 Rh2DG366000 Rh2DG366100 Rh2DG377300 Rh2DG377400 Rh7DG159500 Rh7DG377700
rosa_wichuraiana	Rw2G028020 Rw2G028030 Rw2G028760 Rw2G028770 Rw2G028790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	239
AccBSI	CCGCTC	1 cut(s)	99
AciI	CCGC	2 cut(s)	97, 140
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	2 cut(s)	94, 385
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgeI	ACCGGT	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	194
AjuI	GAANNNNNNNTTGG	2 cut(s)	207, 239
AluBI	AGCT	3 cut(s)	19, 56, 171
AluI	AGCT	3 cut(s)	19, 56, 171
AoxI	GGCC	1 cut(s)	226
ApeKI	GCWGC	1 cut(s)	53
AsiGI	ACCGGT	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	65
BccI	CCATC	1 cut(s)	305
BceAI	ACGGC	1 cut(s)	153
BclI	TGATCA	1 cut(s)	294
BfaI	CTAG	2 cut(s)	348, 354
BfmI	CTRYAG	1 cut(s)	108
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
BmcAI	AGTACT	1 cut(s)	385
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BmsI	GCATC	1 cut(s)	110
BplI	GAGNNNNNCTC	4 cut(s)	40, 72, 42, 74
Bpu10I	CCTNAGC	1 cut(s)	176
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse118I	RCCGGY	1 cut(s)	236
BseGI	GGATG	2 cut(s)	125, 316
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	65
BshFI	GGCC	1 cut(s)	228
BshTI	ACCGGT	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	239
BsnI	GGCC	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	294
BspACI	CCGC	2 cut(s)	97, 140
BspANI	GGCC	1 cut(s)	228
BsrBI	CCGCTC	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	236
BssAI	RCCGGY	1 cut(s)	236
BssMI	GATC	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	176
BstF5I	GGATG	2 cut(s)	125, 316
BstKTI	GATC	1 cut(s)	297
BstMBI	GATC	1 cut(s)	294
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	125, 316
BtsIMutI	CAGTG	1 cut(s)	105
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	93, 384
CspAI	ACCGGT	1 cut(s)	236
CviJI	RGCY	5 cut(s)	19, 56, 171, 228, 329
CviKI_1	RGCY	5 cut(s)	19, 56, 171, 228, 329
CviQI	GTAC	2 cut(s)	93, 384
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
EciI	GGCGGA	1 cut(s)	155
Eco32I	GATATC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	234
EcoRV	GATATC	1 cut(s)	210
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FauI	CCCGC	1 cut(s)	104
FbaI	TGATCA	1 cut(s)	294
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	2 cut(s)	132, 323
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	2 cut(s)	348, 354
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	1 cut(s)	237
HinfI	GANTC	2 cut(s)	72, 263
HpaII	CCGG	1 cut(s)	237
Hpy166II	GTNNAC	2 cut(s)	133, 242
Hpy188I	TCNGA	2 cut(s)	165, 214
Hpy188III	TCNNGA	3 cut(s)	25, 34, 194
Hpy8I	GTNNAC	2 cut(s)	133, 242
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	1 cut(s)	367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
HpyF3I	CTNAG	1 cut(s)	176
Ksp22I	TGATCA	1 cut(s)	294
Kzo9I	GATC	1 cut(s)	294
LpnPI	CCDG	3 cut(s)	19, 49, 250
Lsp1109I	GCAGC	1 cut(s)	65
LweI	GCATC	1 cut(s)	110
MaeI	CTAG	2 cut(s)	348, 354
MalI	GATC	1 cut(s)	296
MbiI	CCGCTC	1 cut(s)	99
MboI	GATC	1 cut(s)	294
MboII	GAAGA	2 cut(s)	227, 230
MfeI	CAATTG	1 cut(s)	392
MluCI	AATT	2 cut(s)	290, 392
MnlI	CCTC	1 cut(s)	239
MseI	TTAA	1 cut(s)	335
MspI	CCGG	1 cut(s)	237
MunI	CAATTG	1 cut(s)	392
MwoI	GCNNNNNNNGC	1 cut(s)	177
NdeII	GATC	1 cut(s)	294
PfeI	GAWTC	2 cut(s)	72, 263
PflMI	CCANNNNNTGG	1 cut(s)	239
PinAI	ACCGGT	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	55
PspPI	GGNCC	1 cut(s)	242
RsaI	GTAC	2 cut(s)	94, 385
RsaNI	GTAC	2 cut(s)	93, 384
SaqAI	TTAA	1 cut(s)	335
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	294
Sau96I	GGNCC	1 cut(s)	242
ScaI	AGTACT	1 cut(s)	385
SetI	ASST	4 cut(s)	21, 58, 173, 177
SfaNI	GCATC	1 cut(s)	110
SfcI	CTRYAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	242
Sse9I	AATT	2 cut(s)	290, 392
SsiI	CCGC	2 cut(s)	97, 140
SspMI	CTAG	2 cut(s)	348, 354
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	261
TasI	AATT	2 cut(s)	290, 392
TatI	WGTACW	1 cut(s)	383
TfiI	GAWTC	2 cut(s)	72, 263
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TscAI	CASTG	1 cut(s)	112
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	20
TspRI	CASTG	1 cut(s)	112
Van91I	CCANNNNNTGG	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	242
XspI	CTAG	2 cut(s)	348, 354
ZrmI	AGTACT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.