Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000790

Physical Location & Seq

Genomic Coordinates Reverse (-)

49200213 .. 49204860

Gene Structure 4648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG338800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGACATGATGCTCAGCCCAAAAAGGCTCATTAAAATGGCTAGAAAGTGGCAGATGAATGATGTTATGGGGAGCAAAAAAATTTCATACCCGAGAGGAGTTGGTGGTAGAAAGTCATGTGATACTACTGCAGTGAAAGGCAATTTTGTTATTTACACCCTTGACAAGGCGCGTTTTGTGCTTCCCTTATCTTATCTTGGTAGCTACATTTTCCAAGAGCTTTTCAAAATGTCTGAAGAAGAGTTTGGAGTATCAAGCAATGAGCCTATCGTATTACCATATCTATACTTGCAAATGGCTCAGATCGACCTCCATCTTTACCTCCTTGGCGGCTCTCTCACAGACCAAAGGAAGCCATGGCCACTGTGCATGTTGTATCCTGCCCTCCCCGGCTTGGCAGCGAATCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

136

Amino Acids

15.5

Weight (kDa)

9.39

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	8 - 95	1.1e-20	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29420 AT1G29420 AT1G29430 AT1G29440 AT1G29450 AT1G29450 AT1G29460 AT1G29460 AT1G29490 AT1G29500 AT1G29510 AT5G27780
fragaria_vesca	FvH4_6g27350
malus_domestica	MD07G1151400.v1.1 MD12G1088000.v1.1 MD12G1088100.v1.1 MD12G1088200.v1.1
prunus_persica	Prupe.7G048400_v2.0.a1 Prupe.7G048500_v2.0.a1 Prupe.7G048600_v2.0.a1
pyrus_communis	pycom12g07490 pycom12g07500
rosa_chinensis	RchiOBHm_Chr2g0129571 RchiOBHm_Chr2g0129581 RchiOBHm_Chr2g0131961 RchiOBHm_Chr2g0131971 RchiOBHm_Chr2g0131981
rosa_laevigata	RLG00000019088 RLG00000019089 RLG00000019220 RLG00000019221
rosa_multiflora	Rmu_sc0000584.1_g000015 Rmu_sc0000584.1_g000016 Rmu_sc0000584.1_g000020 Rmu_sc0000999.1_g000048
rosa_roxburghii	Rroxscaffold_2G00112430 Rroxscaffold_2G00112440 Rroxscaffold_2G00114520
rosa_rugosa	Rorug02G0287200 Rorug02G0287300 Rorug02G0287400 Rorug02G0301300 Rorug02G0301400 Rorug02G0301500 Rorug02G0301600
rosa_samantha	Rh2AG338800 Rh2AG338900 Rh2AG339000 Rh2AG353000 Rh2BG347600 Rh2BG347700 Rh2BG360400 Rh2BG360500 Rh2BG360600 Rh2CG326200 Rh2CG326300 Rh2CG326400 Rh2CG338300 Rh2DG366000 Rh2DG366100 Rh2DG377300 Rh2DG377400 Rh7DG159500 Rh7DG377700
rosa_wichuraiana	Rw2G028020 Rw2G028030 Rw2G028760 Rw2G028770 Rw2G028790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	172
AciI	CCGC	1 cut(s)	330
AcoI	YGGCCR	1 cut(s)	359
AcsI	RAATTY	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	255
AfiI	CCNNNNNNNGG	2 cut(s)	166, 394
AgsI	TTSAA	1 cut(s)	226
AjuI	GAANNNNNNNTTGG	2 cut(s)	228, 260
AluBI	AGCT	2 cut(s)	204, 220
AluI	AGCT	2 cut(s)	204, 220
Ama87I	CYCGRG	1 cut(s)	91
AoxI	GGCC	1 cut(s)	359
ApeKI	GCWGC	1 cut(s)	398
ApoI	RAATTY	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	172
AsuC2I	CCSGG	1 cut(s)	390
AvaI	CYCGRG	1 cut(s)	91
BalI	TGGCCA	1 cut(s)	361
BccI	CCATC	1 cut(s)	321
BciVI	GTATCC	1 cut(s)	387
BcnI	CCSGG	1 cut(s)	390
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	129
BfuI	GTATCC	1 cut(s)	387
BisI	GCNGC	2 cut(s)	331, 399
BlpI	GCTNAGC	1 cut(s)	14
BlsI	GCNGC	2 cut(s)	332, 400
Bme1390I	CCNGG	1 cut(s)	390
BmeT110I	CYCGRG	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	390
Bpu1102I	GCTNAGC	1 cut(s)	14
BpuMI	CCSGG	1 cut(s)	390
BsaJI	CCNNGG	3 cut(s)	325, 356, 388
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 394
Bse3DI	GCAATG	1 cut(s)	265
BseDI	CCNNGG	3 cut(s)	325, 356, 388
BseLI	CCNNNNNNNGG	2 cut(s)	166, 394
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	2 cut(s)	28, 314
BseRI	GAGGAG	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	172
BshFI	GGCC	1 cut(s)	361
BsiHKCI	CYCGRG	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	390
BslI	CCNNNNNNNGG	2 cut(s)	166, 394
BsnI	GGCC	1 cut(s)	361
BsoBI	CYCGRG	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	303
Bsp1720I	GCTNAGC	1 cut(s)	14
Bsp19I	CCATGG	1 cut(s)	356
BspACI	CCGC	1 cut(s)	330
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	2 cut(s)	27, 313
BspFNI	CGCG	1 cut(s)	172
BspMAI	CTGCAG	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	265
BssECI	CCNNGG	3 cut(s)	325, 356, 388
BssMI	GATC	1 cut(s)	303
BssT1I	CCWWGG	2 cut(s)	325, 356
Bst4CI	ACNGT	1 cut(s)	366
Bst6I	CTCTTC	1 cut(s)	234
BstDEI	CTNAG	2 cut(s)	14, 300
BstDSI	CCRYGG	1 cut(s)	356
BstENI	CCTNNNNNAGG	1 cut(s)	164
BstFNI	CGCG	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	1 cut(s)	306
BstMBI	GATC	1 cut(s)	303
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstNSI	RCATGY	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	388
BstSFI	CTRYAG	1 cut(s)	129
BstUI	CGCG	1 cut(s)	172
BsuI	GTATCC	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	361
BtgI	CCRYGG	1 cut(s)	356
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	138, 362
CfoI	GCGC	1 cut(s)	172
CviAII	CATG	4 cut(s)	7, 117, 357, 370
DdeI	CTNAG	2 cut(s)	14, 300
DpnI	GATC	1 cut(s)	305
DpnII	GATC	1 cut(s)	303
EaeI	YGGCCR	1 cut(s)	359
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	2 cut(s)	325, 356
Eco57I	CTGAAG	1 cut(s)	255
Eco88I	CYCGRG	1 cut(s)	91
EcoNI	CCTNNNNNAGG	1 cut(s)	164
EcoT14I	CCWWGG	2 cut(s)	325, 356
ErhI	CCWWGG	2 cut(s)	325, 356
FaeI	CATG	4 cut(s)	10, 120, 360, 373
FaiI	YATR	8 cut(s)	8, 68, 88, 118, 280, 286, 358, 371
FatI	CATG	4 cut(s)	6, 116, 356, 369
Fnu4HI	GCNGC	2 cut(s)	331, 399
Fsp4HI	GCNGC	2 cut(s)	331, 399
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	2 cut(s)	331, 399
HaeIII	GGCC	1 cut(s)	361
HapII	CCGG	1 cut(s)	390
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	4 cut(s)	10, 120, 360, 373
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	1 cut(s)	403
HpaII	CCGG	1 cut(s)	390
Hpy188I	TCNGA	2 cut(s)	235, 303
HpyCH4III	ACNGT	1 cut(s)	366
HpyCH4V	TGCA	3 cut(s)	131, 292, 369
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	2 cut(s)	14, 300
Hsp92II	CATG	4 cut(s)	10, 120, 360, 373
HspAI	GCGC	1 cut(s)	170
Kzo9I	GATC	1 cut(s)	303
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	2 cut(s)	393, 403
MaeI	CTAG	1 cut(s)	42
MalI	GATC	1 cut(s)	305
MboI	GATC	1 cut(s)	303
MboII	GAAGA	2 cut(s)	248, 251
MlsI	TGGCCA	1 cut(s)	361
MluCI	AATT	2 cut(s)	81, 142
MluNI	TGGCCA	1 cut(s)	361
MnlI	CCTC	4 cut(s)	89, 320, 332, 395
Mox20I	TGGCCA	1 cut(s)	361
MscI	TGGCCA	1 cut(s)	361
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	361
MspI	CCGG	1 cut(s)	390
MspR9I	CCNGG	1 cut(s)	390
MvnI	CGCG	1 cut(s)	172
MwoI	GCNNNNNNNGC	1 cut(s)	178
NciI	CCSGG	1 cut(s)	390
NcoI	CCATGG	1 cut(s)	356
NdeII	GATC	1 cut(s)	303
NlaIII	CATG	4 cut(s)	10, 120, 360, 373
NspI	RCATGY	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	403
PkrI	GCNGC	2 cut(s)	332, 400
PstI	CTGCAG	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	2 cut(s)	331, 399
Sau3AI	GATC	1 cut(s)	303
ScrFI	CCNGG	1 cut(s)	390
SetI	ASST	4 cut(s)	206, 222, 312, 324
SfcI	CTRYAG	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	2 cut(s)	81, 142
SsiI	CCGC	1 cut(s)	330
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	2 cut(s)	325, 356
TaaI	ACNGT	1 cut(s)	366
TaqI	TCGA	1 cut(s)	306
TasI	AATT	2 cut(s)	81, 142
TauI	GCSGC	1 cut(s)	333
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	2 cut(s)	138, 369
TseI	GCWGC	1 cut(s)	398
TspDTI	ATGAA	2 cut(s)	71, 75
TspRI	CASTG	2 cut(s)	138, 369
XagI	CCTNNNNNAGG	1 cut(s)	164
XapI	RAATTY	1 cut(s)	81
XceI	RCATGY	1 cut(s)	373
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.