Rorug02G0287400

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000790
Physical Location & Seq
Forward (+)
31429960 .. 31439372
9413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0287400.1

Sequence Viewer

Length: 2907 bp
ATGGCGGAGAGGAAGAGCAGCAAGAAGCCCCAAAGCCTCAACGACAGTCACTATCGCCTCCTCCAAGACCTCAGTTCTGCTCCTCCCAAGCCCTCCGAGCAAGGAAAGGCGACTAAGGTGAGGATTGAAGGCGCGCGCCGTCTCTGTAAGATTCGAGTGGCTTCGGATGATGACAATGATCATGGCGAGGGCTTTAATGACGACGACGCGCCCAGTTTCTCCGGGATTGCTGATTTTGAGTCGCCGCCGCAGCCGCAGCCGCAGAGGAGTGAGGTTGGAAATGGCGGTGGAAATGAGATTAGGGGAATTTTAGATGACTTGAGCTCCAGGCTTGAGTTTTTGTCAATCGAGAGGAAGGGAGCCAGAAAATCTAATAAGGTTGAAATTTCGGGGATTTCGAAGGAAGTTGATGGTGTAAAGAAAGAGAAAGTTGAGTATAAGGATGCGGCGCCTTCGTTTTCGATTGCTTCTGACTTGTCTGATTCCTCTGCTGAGACCACTAAGACCGGTGGAAAGGGAGTTGAGAGTGTGGTGGATGAGCATGAAGAGAAAAGTCGTTTTCAATGCAAGTTCGAAGAGGCTGATGATGACAGAGATCGTGTGGTTGTGAGGGCTAAGAAGACAGATAGACAAGTGGAGAGGCGGGGTGGTGGTAACTATAAAGAGTACTATGATTGTGATGAGGATAACGTGGTTGATGATTCTGTTCCGGAGGATGATGGTTCTATCATTCTGAGTGGTCTCACATATACTTACAAATTACCTGGGAAGATTGCAAAGATGTTGTTTCCGCATCAGCGCGAAGGCTTGAAGTGGCTATGGGCTCTGCATTGCCAGGGTAAAGGAGGAATCTTAGGAGATGACATGGGCTTGGGTAAAACAATGCAGATTTGTGGCTATTTAGCTGGATTATTTCATTCACGCTTGATTAAAAGGGTAATGGTTGTGGCTCCTAAAACACTACTTTCTCATTGGATAAAAGAATTATCAGCTGTGGGTCTCTCAGACAAGATAAGAGAATACTATGGGACATGTACAAAAGCTCGGAAGTATGAGCTTCAGTATGTACTTCAGGACAAAGGCATTCTTCTGACGACTTATGATATTGTGCGAGTCAACTCAAAATCTCTAAAAGGGAGTGACTATATTCTCGATGATGGAAGTGAGGATATGATATGGGATTATATGATACTTGATGAGGGTCATCTCATAAAGAATCCCAGTACACAAAGAGCCAAAAGTTTGCTAGACATACCCTGTTCACATCGCATTATAGTAAGTGGCACGCCATTGCAAAACAATCTGAAGGAGTTGTGGGCCTTATTTAACTTCTGTTGCCCTGAGCTACTGGGTGATAAGAACTGGTTCAAGGAAAGATTCGAGTCACGCATTTGTCGTGGAAATGAGAAAAATGCTTCAGATAGGGAGAAGCGTATTGGTTCCACGGTAGCACAGGAGCTTAGAGACCGTATTCAACCTTTTTTCCTGCGTCGCCTGAAGAATGAGGTGTTTAAGGAGGATAATGACCAAACAAATGCCACACTTTCTAAAAAGAATGAGATCATTGTTTGGCTAAGATTAACCAGCTGTCAGCGGAAACTTTATGAAGCATATTTAAAGAGTGAGCTGGTTCTTTCTGCTTTTGATGGGTCACCATTGGCTGCACTTACGATTCTGAAGAAAATATGTGATCATCCACTTCTATTGACAAAGCGAGCTGCTGAAGATGTACTAGAAGAGTTGGATTCATTGCTTAAGCCAGATGATGCTTGTATGGCAGAAAAACTAGCAATGCATATAGCAGATGTTGCTGAGAAAGAGGAGTTTGATGAGAACCATGCAAATCTCTCTTGCAAAATATCTTTTATAATGTCATTGTTGGATAACTTGATTCCTGAGGGGCATAATGTTCTCATCTTTTCCCAAACTAGAAAGATGCTTAATCTTATTCAGGAAACACTAATATCCAGCGGTTACAAGTTCCAACGCATTGATGGTACCACAAAAGCTACTGAAAGAATTAGGATTGTTAATGATTTCCAAGAAGGTATTGGGGCTCCCATATTTCTCCTGACTTCTCAAGTTGGTGGTTTGGGTCTTACACTTACAAGAGCTGATCGTGTGATAGTGGTTGATCCTGCTTGGAACCCGAGTACTGATAGCCAGAGTGTGGATCGTGCATATCGAATTGGGCAGAATAAGGATGTCATTGTATATAGGTTAATGACTTGTGCGACTGTTGAAGAAAAGATATACAGAAAACAGATTTACAAAGGAGGGTTGTTTAGAACTGCAACTGAGCAAAAAGAGCAGATTCGGTACTTTAGTCAACAGGATCTTCGTGAACTTTTCAGTCTCCCACAACAAGGTTTTGATGTTTCCCTTACTCAGAAGCAGCTAAATGAGGAGCATGATCAACAGCACACAATGGAAGAGTCTTTACAAGCCCATATAGAATTCTTGGAAACTCAAGGGATAGCTGGTGTTAGTAACCACAGTTTACTCTTCTCCAAGACAGCACCACCTCTGCCAGAGGTAGACGCGGAGCAGGAGGAAGTTGAAAGGATTAGGCGAACTTTACTTGCGAGAAGCTCAATTTCAAGTTCGGCACCCGAATGTAATGTAAATGGGGCTGAATATGCTTTCAAGCCTAAGGATGTAATATTAAATAAGAAGATGCCTTCTTCACCAGCTGATGCAGGAAAAATGACAAAATCAGAGATTAAAGAGAACATCAATAGGCTGTCACAAACTCTTGCAAATAAGGCTTTAGTTTCAAGATTACCTGATAAGGGACAGAAAATACAGAGGCAAATTTCTGAATTGAATGCTGAGCTTCGTAGACTAGAGAAGGACGTAATTGACTTGGATGATGTGACTGAGGAGCTTAAAGGAGTGGTGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

968

Amino Acids

109.14

Weight (kDa)

5.9

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 262 - 430 8.1e-07 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 265 - 566 6.8e-62 SNF2-related domain
AAA_34 PF13872 281 - 411 7e-07 P-loop containing NTP hydrolase pore-1
HDA2-3 PF11496 607 - 749 1.3e-06 Class II histone deacetylase complex subunits 2 and 3
Helicase_C PF00271 622 - 731 4.8e-22 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1868
Acc65I GGTACC 1 cut(s) 1997
AccB1I GGYRCC 3 cut(s) 448, 1997, 2608
AccB7I CCANNNNNTGG 1 cut(s) 2170
AccI GTMKAC 2 cut(s) 2538, 2842
AccII CGCG 5 cut(s) 134, 136, 209, 801, 2543
AccIII TCCGGA 1 cut(s) 709
AclWI GGATC 3 cut(s) 2129, 2181, 2343
AcsI RAATTY 4 cut(s) 306, 384, 2456, 2814
AcuI CTGAAG 7 cut(s) 1043, 1055, 1325, 1401, 1517, 1697, 1743
AcyI GRCGYC 1 cut(s) 449
AfaI GTAC 8 cut(s) 668, 1036, 1068, 1225, 1731, 1999, 2155, 2321
AfiI CCNNNNNNNGG 3 cut(s) 2170, 2366, 2792
AflII CTTAAG 1 cut(s) 1754
AflIII ACRYGT 1 cut(s) 1031
AgeI ACCGGT 1 cut(s) 506
AjnI CCWGG 3 cut(s) 326, 763, 834
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 6 cut(s) 146, 488, 746, 1004, 1458, 2360
AlwI GGATC 3 cut(s) 2129, 2181, 2343
Ama87I CYCGRG 1 cut(s) 2149
Aor13HI TCCGGA 1 cut(s) 709
AoxI GGCC 1 cut(s) 1317
ApeKI GCWGC 6 cut(s) 18, 250, 256, 1661, 1718, 2395
ApoI RAATTY 4 cut(s) 306, 384, 2456, 2814
AsiGI ACCGGT 1 cut(s) 506
Asp700I GAANNNNTTC 1 cut(s) 1364
Asp718I GGTACC 1 cut(s) 1997
AspLEI GCGC 6 cut(s) 134, 136, 138, 211, 451, 801
AspS9I GGNCC 1 cut(s) 1317
AsuC2I CCSGG 1 cut(s) 223
AsuHPI GGTGA 4 cut(s) 130, 1364, 1644, 2679
AsuII TTCGAA 2 cut(s) 398, 573
AvaI CYCGRG 1 cut(s) 2149
AxyI CCTNAGG 2 cut(s) 1896, 2652
BaeI ACNNNNGTAYC 2 cut(s) 2311, 2344
BanI GGYRCC 3 cut(s) 448, 1997, 2608
BanII GRGCYC 3 cut(s) 326, 826, 2059
BarI GAAGNNNNNNTAC 2 cut(s) 2424, 2456
BbsI GAAGAC 1 cut(s) 626
Bbv12I GWGCWC 1 cut(s) 326
BbvI GCAGC 6 cut(s) 30, 262, 268, 1648, 1705, 2407
BccI CCATC 5 cut(s) 404, 713, 1151, 1640, 1988
BceAI ACGGC 1 cut(s) 123
BciT130I CCWGG 3 cut(s) 328, 765, 836
BclI TGATCA 3 cut(s) 178, 1690, 2413
BcnI CCSGG 1 cut(s) 223
BcoDI GTCTC 6 cut(s) 146, 488, 746, 1004, 1458, 2360
BfaI CTAG 5 cut(s) 1247, 1733, 1787, 1929, 2846
BfoI RGCGCY 1 cut(s) 452
BfrI CTTAAG 1 cut(s) 1754
BlpI GCTNAGC 1 cut(s) 2832
BmcAI AGTACT 2 cut(s) 668, 2155
Bme1390I CCNGG 4 cut(s) 223, 328, 765, 836
BmeT110I CYCGRG 1 cut(s) 2149
BmgT120I GGNCC 1 cut(s) 1317
BmiI GGNNCC 8 cut(s) 361, 450, 951, 1441, 1999, 2058, 2147, 2610
BmrFI CCNGG 4 cut(s) 223, 328, 765, 836
BmrI ACTGGG 3 cut(s) 207, 1215, 1358
BmsI GCATC 6 cut(s) 433, 802, 1756, 1926, 2667, 2686
BmuI ACTGGG 3 cut(s) 207, 1215, 1358
BpiI GAAGAC 1 cut(s) 626
BpmI CTGGAG 1 cut(s) 310
Bpu10I CCTNAGC 1 cut(s) 1341
Bpu1102I GCTNAGC 1 cut(s) 2832
Bpu14I TTCGAA 2 cut(s) 398, 573
BpuEI CTTGAG 4 cut(s) 340, 353, 2064, 2454
BpuMI CCSGG 1 cut(s) 223
BsaHI GRCGYC 1 cut(s) 449
BsaI GGTCTC 4 cut(s) 488, 746, 1004, 1458
BsaJI CCNNGG 3 cut(s) 764, 835, 1443
BsaWI WCCGGW 2 cut(s) 506, 709
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 3 cut(s) 2170, 2366, 2792
Bse118I RCCGGY 1 cut(s) 506
Bse1I ACTGG 4 cut(s) 213, 1221, 1353, 1367
Bse21I CCTNAGG 2 cut(s) 1896, 2652
Bse3DI GCAATG 4 cut(s) 829, 1289, 1748, 1797
BseAI TCCGGA 1 cut(s) 709
BseBI CCWGG 3 cut(s) 328, 765, 836
BseDI CCNNGG 3 cut(s) 764, 835, 1443
BseGI GGATG 8 cut(s) 172, 448, 541, 721, 1693, 2209, 2662, 2875
BseLI CCNNNNNNNGG 3 cut(s) 2170, 2366, 2792
BseMI GCAATG 4 cut(s) 829, 1289, 1748, 1797
BseNI ACTGG 4 cut(s) 213, 1221, 1353, 1367
BsePI GCGCGC 2 cut(s) 132, 134
BseRI GAGGAG 6 cut(s) 50, 72, 280, 1835, 2420, 2897
BseXI GCAGC 6 cut(s) 30, 262, 268, 1648, 1705, 2407
BsgI GTGCAG 1 cut(s) 1647
Bsh1236I CGCG 5 cut(s) 134, 136, 209, 801, 2543
BshFI GGCC 1 cut(s) 1319
BshNI GGYRCC 3 cut(s) 448, 1997, 2608
BshTI ACCGGT 1 cut(s) 506
BsiHKAI GWGCWC 1 cut(s) 326
BsiHKCI CYCGRG 1 cut(s) 2149
BsiSI CCGG 3 cut(s) 222, 507, 710
BslFI GGGAC 2 cut(s) 1042, 2808
BslI CCNNNNNNNGG 3 cut(s) 2170, 2366, 2792
BsmAI GTCTC 6 cut(s) 146, 488, 746, 1004, 1458, 2360
BsmBI CGTCTC 1 cut(s) 146
BsmFI GGGAC 2 cut(s) 1042, 2808
BsmI GAATGC 2 cut(s) 1083, 2833
BsnI GGCC 1 cut(s) 1319
Bso31I GGTCTC 4 cut(s) 488, 746, 1004, 1458
BsoBI CYCGRG 1 cut(s) 2149
Bsp119I TTCGAA 2 cut(s) 398, 573
Bsp1286I GDGCHC 3 cut(s) 326, 826, 2059
Bsp13I TCCGGA 1 cut(s) 709
Bsp1407I TGTACA 1 cut(s) 1034
Bsp143I GATC 9 cut(s) 178, 595, 1560, 1690, 2116, 2134, 2173, 2335, 2413
Bsp1720I GCTNAGC 1 cut(s) 2832
BspANI GGCC 1 cut(s) 1319
BspEI TCCGGA 1 cut(s) 709
BspFNI CGCG 5 cut(s) 134, 136, 209, 801, 2543
BspLI GGNNCC 8 cut(s) 361, 450, 951, 1441, 1999, 2058, 2147, 2610
BspPI GGATC 3 cut(s) 2129, 2181, 2343
BspQI GCTCTTC 1 cut(s) 8
BspT104I TTCGAA 2 cut(s) 398, 573
BspT107I GGYRCC 3 cut(s) 448, 1997, 2608
BspTI CTTAAG 1 cut(s) 1754
BspTNI GGTCTC 4 cut(s) 488, 746, 1004, 1458
BsrDI GCAATG 4 cut(s) 829, 1289, 1748, 1797
BsrFI RCCGGY 1 cut(s) 506
BsrGI TGTACA 1 cut(s) 1034
BsrI ACTGG 4 cut(s) 213, 1221, 1353, 1367
BssAI RCCGGY 1 cut(s) 506
BssECI CCNNGG 3 cut(s) 764, 835, 1443
BssHII GCGCGC 2 cut(s) 132, 134
BssMI GATC 9 cut(s) 178, 595, 1560, 1690, 2116, 2134, 2173, 2335, 2413
BssNI GRCGYC 1 cut(s) 449
Bst2UI CCWGG 3 cut(s) 328, 765, 836
Bst4CI ACNGT 5 cut(s) 47, 1447, 1469, 2239, 2498
Bst6I CTCTTC 6 cut(s) 8, 540, 570, 1731, 2427, 2510
BstACI GRCGYC 1 cut(s) 449
BstAFI CTTAAG 1 cut(s) 1754
BstAPI GCANNNNNTGC 1 cut(s) 1808
BstAUI TGTACA 1 cut(s) 1034
BstBI TTCGAA 2 cut(s) 398, 573
BstC8I GCNNGC 4 cut(s) 134, 136, 1286, 1716
BstDSI CCRYGG 1 cut(s) 1443
BstEII GGTNACC 1 cut(s) 1650
BstF5I GGATG 8 cut(s) 172, 448, 541, 721, 1693, 2209, 2662, 2875
BstFNI CGCG 5 cut(s) 134, 136, 209, 801, 2543
BstH2I RGCGCY 1 cut(s) 452
BstHHI GCGC 6 cut(s) 134, 136, 138, 211, 451, 801
BstKTI GATC 9 cut(s) 181, 598, 1563, 1693, 2119, 2137, 2176, 2338, 2416
BstMAI GTCTC 6 cut(s) 146, 488, 746, 1004, 1458, 2360
BstMBI GATC 9 cut(s) 178, 595, 1560, 1690, 2116, 2134, 2173, 2335, 2413
BstNI CCWGG 3 cut(s) 328, 765, 836
BstNSI RCATGY 1 cut(s) 1035
BstPI GGTNACC 1 cut(s) 1650
BstSCI CCNGG 4 cut(s) 221, 326, 763, 834
BstUI CGCG 5 cut(s) 134, 136, 209, 801, 2543
BstV1I GCAGC 6 cut(s) 30, 262, 268, 1648, 1705, 2407
BstV2I GAAGAC 1 cut(s) 626
BstX2I RGATCY 1 cut(s) 2335
BstYI RGATCY 1 cut(s) 2335
Bsu36I CCTNAGG 2 cut(s) 1896, 2652
BsuRI GGCC 1 cut(s) 1319
BtgI CCRYGG 1 cut(s) 1443
BtgZI GCGATG 1 cut(s) 1250
BtsCI GGATG 8 cut(s) 172, 448, 541, 721, 1693, 2209, 2662, 2875
Cac8I GCNNGC 4 cut(s) 134, 136, 1286, 1716
CfoI GCGC 6 cut(s) 134, 136, 138, 211, 451, 801
Cfr10I RCCGGY 1 cut(s) 506
Cfr13I GGNCC 1 cut(s) 1317
CseI GACGC 3 cut(s) 215, 1478, 2549
Csp6I GTAC 8 cut(s) 667, 1035, 1067, 1224, 1730, 1998, 2154, 2320
CspAI ACCGGT 1 cut(s) 506
CspCI CAANNNNNGTGG 2 cut(s) 1686, 1721
CviAII CATG 6 cut(s) 182, 542, 865, 1032, 1838, 2411
CviQI GTAC 8 cut(s) 667, 1035, 1067, 1224, 1730, 1998, 2154, 2320
DinI GGCGCC 1 cut(s) 450
DpnI GATC 9 cut(s) 180, 597, 1562, 1692, 2118, 2136, 2175, 2337, 2415
DpnII GATC 9 cut(s) 178, 595, 1560, 1690, 2116, 2134, 2173, 2335, 2413
DraI TTTAAA 1 cut(s) 1617
Eam1104I CTCTTC 6 cut(s) 8, 540, 570, 1731, 2427, 2510
EarI CTCTTC 6 cut(s) 8, 540, 570, 1731, 2427, 2510
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 324
Eco24I GRGCYC 3 cut(s) 326, 826, 2059
Eco31I GGTCTC 4 cut(s) 488, 746, 1004, 1458
Eco53kI GAGCTC 1 cut(s) 324
Eco57I CTGAAG 7 cut(s) 1043, 1055, 1325, 1401, 1517, 1697, 1743
Eco81I CCTNAGG 2 cut(s) 1896, 2652
Eco88I CYCGRG 1 cut(s) 2149
Eco91I GGTNACC 1 cut(s) 1650
EcoICRI GAGCTC 1 cut(s) 324
EcoO65I GGTNACC 1 cut(s) 1650
EcoRI GAATTC 1 cut(s) 2456
EcoRII CCWGG 3 cut(s) 326, 763, 834
EcoT22I ATGCAT 1 cut(s) 1797
EcoT38I GRGCYC 3 cut(s) 326, 826, 2059
EgeI GGCGCC 1 cut(s) 450
EheI GGCGCC 1 cut(s) 450
Esp3I CGTCTC 1 cut(s) 146
FaeI CATG 6 cut(s) 185, 545, 868, 1035, 1841, 2414
FalI AAGNNNNNCTT 2 cut(s) 1071, 1103
FaqI GGGAC 2 cut(s) 1042, 2808
FatI CATG 6 cut(s) 181, 541, 864, 1031, 1837, 2410
FauI CCCGC 1 cut(s) 636
FbaI TGATCA 3 cut(s) 178, 1690, 2413
FblI GTMKAC 2 cut(s) 2538, 2842
FokI GGATG 8 cut(s) 179, 455, 548, 728, 1680, 2216, 2669, 2882
FriOI GRGCYC 3 cut(s) 326, 826, 2059
FspBI CTAG 5 cut(s) 1247, 1733, 1787, 1929, 2846
GlaI GCGC 6 cut(s) 133, 135, 137, 210, 450, 800
GsuI CTGGAG 1 cut(s) 310
HaeII RGCGCY 1 cut(s) 452
HaeIII GGCC 1 cut(s) 1319
HapII CCGG 3 cut(s) 222, 507, 710
HgaI GACGC 3 cut(s) 215, 1478, 2549
HhaI GCGC 6 cut(s) 134, 136, 138, 211, 451, 801
Hin1I GRCGYC 1 cut(s) 449
Hin1II CATG 6 cut(s) 185, 545, 868, 1035, 1841, 2414
Hin6I GCGC 6 cut(s) 132, 134, 136, 209, 449, 799
HinP1I GCGC 6 cut(s) 132, 134, 136, 209, 449, 799
HincII GTYRAC 2 cut(s) 1117, 2330
HindII GTYRAC 2 cut(s) 1117, 2330
HpaII CCGG 3 cut(s) 222, 507, 710
HphI GGTGA 4 cut(s) 130, 1364, 1644, 2679
Hpy166II GTNNAC 8 cut(s) 1117, 1226, 1262, 2330, 2345, 2501, 2539, 2843
Hpy188III TCNNGA 9 cut(s) 349, 710, 1073, 1151, 1895, 1952, 2071, 2342, 2778
Hpy8I GTNNAC 8 cut(s) 1117, 1226, 1262, 2330, 2345, 2501, 2539, 2843
Hpy99I CGWCG 3 cut(s) 206, 209, 1494
HpyAV CCTTC 9 cut(s) 122, 349, 394, 462, 797, 1300, 2039, 2691, 2845
HpyCH4III ACNGT 5 cut(s) 47, 1447, 1469, 2239, 2498
HpyCH4IV ACGT 2 cut(s) 690, 2856
HpySE526I ACGT 2 cut(s) 690, 2856
Hsp92I GRCGYC 1 cut(s) 449
Hsp92II CATG 6 cut(s) 185, 545, 868, 1035, 1841, 2414
HspAI GCGC 6 cut(s) 132, 134, 136, 209, 449, 799
KasI GGCGCC 1 cut(s) 448
Kpn2I TCCGGA 1 cut(s) 709
KpnI GGTACC 1 cut(s) 2001
Ksp22I TGATCA 3 cut(s) 178, 1690, 2413
Kzo9I GATC 9 cut(s) 178, 595, 1560, 1690, 2116, 2134, 2173, 2335, 2413
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 9 cut(s) 85, 329, 359, 955, 1456, 2062, 2407, 2545, 2884
Lsp1109I GCAGC 6 cut(s) 30, 262, 268, 1648, 1705, 2407
LweI GCATC 6 cut(s) 433, 802, 1756, 1926, 2667, 2686
MaeI CTAG 5 cut(s) 1247, 1733, 1787, 1929, 2846
MaeII ACGT 2 cut(s) 690, 2856
MaeIII GTNAC 9 cut(s) 47, 653, 1139, 1383, 1650, 1973, 2489, 2745, 2875
MalI GATC 9 cut(s) 180, 597, 1562, 1692, 2118, 2136, 2175, 2337, 2415
MboI GATC 9 cut(s) 178, 595, 1560, 1690, 2116, 2134, 2173, 2335, 2413
MflI RGATCY 1 cut(s) 2335
MhlI GDGCHC 3 cut(s) 326, 826, 2059
Mly113I GGCGCC 1 cut(s) 449
MlyI GAGTC 4 cut(s) 248, 1122, 1391, 2444
MmeI TCCRAC 4 cut(s) 256, 1722, 1860, 2008
Mph1103I ATGCAT 1 cut(s) 1797
MroI TCCGGA 1 cut(s) 709
MroXI GAANNNNTTC 1 cut(s) 1364
MslI CAYNNNNRTG 1 cut(s) 2614
MspA1I CMGCKG 5 cut(s) 992, 1587, 1594, 1971, 2693
MspCI CTTAAG 1 cut(s) 1754
MspI CCGG 3 cut(s) 222, 507, 710
MspR9I CCNGG 4 cut(s) 223, 328, 765, 836
Mva1269I GAATGC 2 cut(s) 1083, 2833
MvaI CCWGG 3 cut(s) 328, 765, 836
MvnI CGCG 5 cut(s) 134, 136, 209, 801, 2543
NarI GGCGCC 1 cut(s) 449
NciI CCSGG 1 cut(s) 223
NdeII GATC 9 cut(s) 178, 595, 1560, 1690, 2116, 2134, 2173, 2335, 2413
NlaIII CATG 6 cut(s) 185, 545, 868, 1035, 1841, 2414
NlaIV GGNNCC 8 cut(s) 361, 450, 951, 1441, 1999, 2058, 2147, 2610
NmuCI GTSAC 6 cut(s) 47, 1139, 1383, 1650, 2745, 2875
NsiI ATGCAT 1 cut(s) 1797
NspI RCATGY 1 cut(s) 1035
NspV TTCGAA 2 cut(s) 398, 573
PauI GCGCGC 2 cut(s) 132, 134
PciI ACATGT 1 cut(s) 1031
PciSI GCTCTTC 1 cut(s) 8
PcsI WCGNNNNNNNCGW 3 cut(s) 395, 1393, 2182
PctI GAATGC 2 cut(s) 1083, 2833
PdmI GAANNNNTTC 1 cut(s) 1364
PflMI CCANNNNNTGG 1 cut(s) 2170
PfoI TCCNGGA 1 cut(s) 221
PinAI ACCGGT 1 cut(s) 506
PleI GAGTC 4 cut(s) 247, 1121, 1390, 2443
PluTI GGCGCC 1 cut(s) 452
PpsI GAGTC 4 cut(s) 247, 1121, 1390, 2443
PscI ACATGT 1 cut(s) 1031
PsiI TTATAA 1 cut(s) 1868
Psp124BI GAGCTC 1 cut(s) 326
Psp6I CCWGG 3 cut(s) 326, 763, 834
PspEI GGTNACC 1 cut(s) 1650
PspGI CCWGG 3 cut(s) 326, 763, 834
PspN4I GGNNCC 8 cut(s) 361, 450, 951, 1441, 1999, 2058, 2147, 2610
PspPI GGNCC 1 cut(s) 1317
PsuI RGATCY 1 cut(s) 2335
PteI GCGCGC 2 cut(s) 132, 134
PvuII CAGCTG 3 cut(s) 992, 1587, 2693
RsaI GTAC 8 cut(s) 668, 1036, 1068, 1225, 1731, 1999, 2155, 2321
RsaNI GTAC 8 cut(s) 667, 1035, 1067, 1224, 1730, 1998, 2154, 2320
RseI CAYNNNNRTG 1 cut(s) 2614
SacI GAGCTC 1 cut(s) 326
SapI GCTCTTC 1 cut(s) 8
Sau3AI GATC 9 cut(s) 178, 595, 1560, 1690, 2116, 2134, 2173, 2335, 2413
Sau96I GGNCC 1 cut(s) 1317
ScaI AGTACT 2 cut(s) 668, 2155
SchI GAGTC 4 cut(s) 248, 1122, 1391, 2444
ScrFI CCNGG 4 cut(s) 223, 328, 765, 836
SduI GDGCHC 3 cut(s) 326, 826, 2059
SfaNI GCATC 6 cut(s) 433, 802, 1756, 1926, 2667, 2686
SfoI GGCGCC 1 cut(s) 450
SfuI TTCGAA 2 cut(s) 398, 573
SmiMI CAYNNNNRTG 1 cut(s) 2614
SmlI CTYRAG 5 cut(s) 319, 332, 1754, 2079, 2469
SmoI CTYRAG 5 cut(s) 319, 332, 1754, 2079, 2469
SspDI GGCGCC 1 cut(s) 448
SspI AATATT 1 cut(s) 2664
SspMI CTAG 5 cut(s) 1247, 1733, 1787, 1929, 2846
SstI GAGCTC 1 cut(s) 326
StyD4I CCNGG 4 cut(s) 221, 326, 763, 834
TaaI ACNGT 5 cut(s) 47, 1447, 1469, 2239, 2498
TaiI ACGT 2 cut(s) 693, 2859
TaqI TCGA 8 cut(s) 154, 348, 398, 461, 573, 1152, 1380, 2185
TatI WGTACW 6 cut(s) 666, 1034, 1066, 1223, 1729, 2153
TauI GCSGC 5 cut(s) 247, 250, 256, 262, 449
TseFI GTSAC 6 cut(s) 47, 1139, 1383, 1650, 2745, 2875
TseI GCWGC 6 cut(s) 18, 250, 256, 1661, 1718, 2395
Tsp45I GTSAC 6 cut(s) 47, 1139, 1383, 1650, 2745, 2875
TspDTI ATGAA 4 cut(s) 558, 905, 1620, 1737
Van91I CCANNNNNTGG 1 cut(s) 2170
Vha464I CTTAAG 1 cut(s) 1754
XapI RAATTY 4 cut(s) 306, 384, 2456, 2814
XceI RCATGY 1 cut(s) 1035
XcmI CCANNNNNNNNNTGG 2 cut(s) 1991, 2048
XmiI GTMKAC 2 cut(s) 2538, 2842
XmnI GAANNNNTTC 1 cut(s) 1364
XspI CTAG 5 cut(s) 1247, 1733, 1787, 1929, 2846
ZrmI AGTACT 2 cut(s) 668, 2155
Zsp2I ATGCAT 1 cut(s) 1797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.