Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000790

Physical Location & Seq

Genomic Coordinates Reverse (-)

10304507 .. 10305108

Gene Structure 602 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G29440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGATAAACGCAAAGAAGCTTATGAAGATGGCTAAGAAATGGCAACAAAGAGCAGCCCTCCACAGGAAAAGAATCTCATTTCAGAGATCAAGTGTCTTTACTAGCAGCTCTTCTACTGTAGAAAAGGGTTGTTTCGTGGTTTACACGGCGGATAAAATCCGCTTTGCTTTTCCAATAAGTTATCTGAGCAACTCTGTTGTCCAGGAGCTATTGAAAATATCTGAAGAAGATTTCGGTCTCCCAACGGAAGGACCAATCACATTACCATTCGATTCGGCCTTTTTAGAGTATCTCGTCAAACTGATCCAAAGACGAATGGATGAAGATACAGAAAAGGCTTTGTTATTGTCAATCTCAAGTGCTAGATGCTCTTTTCAACCACAAGAACAACAATGTAGTACTACGCAACAGTTGCTTGTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006810 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009914 GO:0009926 GO:0010817 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046620 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0080086 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

141

Amino Acids

16.15

Weight (kDa)

9.24

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	5 - 102	1.1e-27	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29420 AT1G29420 AT1G29430 AT1G29440 AT1G29450 AT1G29450 AT1G29460 AT1G29460 AT1G29490 AT1G29500 AT1G29510 AT5G27780
fragaria_vesca	FvH4_6g27350
malus_domestica	MD07G1151400.v1.1 MD12G1088000.v1.1 MD12G1088100.v1.1 MD12G1088200.v1.1
prunus_persica	Prupe.7G048400_v2.0.a1 Prupe.7G048500_v2.0.a1 Prupe.7G048600_v2.0.a1
pyrus_communis	pycom12g07490 pycom12g07500
rosa_chinensis	RchiOBHm_Chr2g0129571 RchiOBHm_Chr2g0129581 RchiOBHm_Chr2g0131961 RchiOBHm_Chr2g0131971 RchiOBHm_Chr2g0131981
rosa_laevigata	RLG00000019088 RLG00000019089 RLG00000019220 RLG00000019221
rosa_multiflora	Rmu_sc0000584.1_g000015 Rmu_sc0000584.1_g000016 Rmu_sc0000584.1_g000020 Rmu_sc0000999.1_g000048
rosa_roxburghii	Rroxscaffold_2G00112430 Rroxscaffold_2G00112440 Rroxscaffold_2G00114520
rosa_rugosa	Rorug02G0287200 Rorug02G0287300 Rorug02G0287400 Rorug02G0301300 Rorug02G0301400 Rorug02G0301500 Rorug02G0301600
rosa_samantha	Rh2AG338800 Rh2AG338900 Rh2AG339000 Rh2AG353000 Rh2BG347600 Rh2BG347700 Rh2BG360400 Rh2BG360500 Rh2BG360600 Rh2CG326200 Rh2CG326300 Rh2CG326400 Rh2CG338300 Rh2DG366000 Rh2DG366100 Rh2DG377300 Rh2DG377400 Rh7DG159500 Rh7DG377700
rosa_wichuraiana	Rw2G028020 Rw2G028030 Rw2G028760 Rw2G028770 Rw2G028790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	149, 160
AclWI	GGATC	1 cut(s)	298
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	1 cut(s)	400
AfiI	CCNNNNNNNGG	2 cut(s)	63, 248
AgsI	TTSAA	2 cut(s)	214, 377
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	3 cut(s)	19, 108, 208
AluI	AGCT	3 cut(s)	19, 108, 208
Alw26I	GTCTC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	298
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	2 cut(s)	53, 105
AspS9I	GGNCC	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	251
BbvI	GCAGC	2 cut(s)	65, 117
BccI	CCATC	1 cut(s)	22
BceAI	ACGGC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	2 cut(s)	102, 363
BfmI	CTRYAG	1 cut(s)	117
BisI	GCNGC	2 cut(s)	54, 106
BlsI	GCNGC	2 cut(s)	55, 107
BmcAI	AGTACT	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	251
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	1 cut(s)	356
BplI	GAGNNNNNCTC	2 cut(s)	42, 74
BpuEI	CTTGAG	1 cut(s)	340
BsaI	GGTCTC	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 248
BseBI	CCWGG	1 cut(s)	203
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	2 cut(s)	63, 248
BseMII	CTCAG	1 cut(s)	176
BseXI	GCAGC	2 cut(s)	65, 117
BshFI	GGCC	1 cut(s)	278
BslI	CCNNNNNNNGG	2 cut(s)	63, 248
BsmAI	GTCTC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	278
Bso31I	GGTCTC	1 cut(s)	242
Bsp143I	GATC	2 cut(s)	86, 303
BspACI	CCGC	2 cut(s)	149, 160
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	1 cut(s)	177
BspPI	GGATC	1 cut(s)	298
BspQI	GCTCTTC	1 cut(s)	115
BspTNI	GGTCTC	1 cut(s)	242
BssMI	GATC	2 cut(s)	86, 303
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	2 cut(s)	118, 411
Bst6I	CTCTTC	1 cut(s)	115
BstAPI	GCANNNNNTGC	1 cut(s)	412
BstDEI	CTNAG	2 cut(s)	33, 185
BstF5I	GGATG	1 cut(s)	325
BstKTI	GATC	2 cut(s)	89, 306
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	2 cut(s)	86, 303
BstMWI	GCNNNNNNNGC	1 cut(s)	412
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	201
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	65, 117
BsuRI	GGCC	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	399
CviJI	RGCY	7 cut(s)	19, 32, 56, 108, 208, 278, 338
CviKI_1	RGCY	7 cut(s)	19, 32, 56, 108, 208, 278, 338
CviQI	GTAC	1 cut(s)	399
DdeI	CTNAG	2 cut(s)	33, 185
DpnI	GATC	2 cut(s)	88, 305
DpnII	GATC	2 cut(s)	86, 303
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
EciI	GGCGGA	1 cut(s)	164
Eco31I	GGTCTC	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	201
FaiI	YATR	1 cut(s)	23
Fnu4HI	GCNGC	2 cut(s)	54, 106
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	2 cut(s)	54, 106
FspBI	CTAG	2 cut(s)	102, 363
GluI	GCNGC	2 cut(s)	54, 106
HaeIII	GGCC	1 cut(s)	278
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	2 cut(s)	72, 272
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	3 cut(s)	84, 186, 223
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	1 cut(s)	242
HpyCH4III	ACNGT	2 cut(s)	118, 411
HpyF10VI	GCNNNNNNNGC	1 cut(s)	412
HpyF3I	CTNAG	2 cut(s)	33, 185
Kzo9I	GATC	2 cut(s)	86, 303
LguI	GCTCTTC	1 cut(s)	115
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	3 cut(s)	49, 188, 215
Lsp1109I	GCAGC	2 cut(s)	65, 117
LweI	GCATC	1 cut(s)	356
MaeI	CTAG	2 cut(s)	102, 363
MalI	GATC	2 cut(s)	88, 305
MboI	GATC	2 cut(s)	86, 303
MboII	GAAGA	5 cut(s)	37, 102, 236, 239, 335
MnlI	CCTC	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	412
NdeII	GATC	2 cut(s)	86, 303
PciSI	GCTCTTC	1 cut(s)	115
PfeI	GAWTC	2 cut(s)	72, 272
PfoI	TCCNGGA	1 cut(s)	201
PkrI	GCNGC	2 cut(s)	55, 107
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	251
RsaI	GTAC	1 cut(s)	400
RsaNI	GTAC	1 cut(s)	399
SapI	GCTCTTC	1 cut(s)	115
SatI	GCNGC	2 cut(s)	54, 106
Sau3AI	GATC	2 cut(s)	86, 303
Sau96I	GGNCC	1 cut(s)	251
ScaI	AGTACT	1 cut(s)	400
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	3 cut(s)	21, 110, 210
SfaNI	GCATC	1 cut(s)	356
SfcI	CTRYAG	1 cut(s)	117
SinI	GGWCC	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
SsiI	CCGC	2 cut(s)	149, 160
SspMI	CTAG	2 cut(s)	102, 363
StyD4I	CCNGG	1 cut(s)	201
TaaI	ACNGT	2 cut(s)	118, 411
TaqI	TCGA	1 cut(s)	270
TaqII	GACCGA	1 cut(s)	224
TatI	WGTACW	1 cut(s)	398
TfiI	GAWTC	2 cut(s)	72, 272
TseI	GCWGC	2 cut(s)	53, 105
TspDTI	ATGAA	2 cut(s)	38, 336
TspGWI	ACGGA	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	251
XspI	CTAG	2 cut(s)	102, 363
ZrmI	AGTACT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.