Rh2DG366000

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000790
Physical Location & Seq
Reverse (-)
51607049 .. 51607363
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG366000.1

Sequence Viewer

Length: 315 bp
ATGGACGTATTGCTCAGTCCTAAGAAGCTCATCAAAATGACCAAGAAGTTGCAGAAGCAGGTACCAGTTATTGGGAGGAAAAGAACAACACAGCAAACAGTTGTTCGCAGTAACAAAATTAATAGTACTACTGCAAATAAGGGCACTTTTGTTATCTACACTCTTGACCAAAGGCGTTTTGTACTTCCCTTATCCTTTCTATGCAACTACATTTTTCAAGAGCTTCTCAAGATGTCCGAAGAAGAGTTTGGAATACCAAGTGACGGGCCTATTGTAGTCCCATGTGATTCACTCCTCGTGAATTACATTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

104

Amino Acids

11.89

Weight (kDa)

9.7

Isoelectric Point (pI)

64.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 8 - 104 3.2e-25 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 49
Acc65I GGTACC 1 cut(s) 61
AccB1I GGYRCC 1 cut(s) 61
AccB7I CCANNNNNTGG 1 cut(s) 71
AfaI GTAC 3 cut(s) 63, 127, 183
AfiI CCNNNNNNNGG 2 cut(s) 71, 263
AgsI TTSAA 1 cut(s) 218
AjuI GAANNNNNNNTTGG 2 cut(s) 231, 263
AluBI AGCT 2 cut(s) 28, 223
AluI AGCT 2 cut(s) 28, 223
AoxI GGCC 1 cut(s) 266
AseI ATTAAT 1 cut(s) 120
Asp718I GGTACC 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 266
BaeGI GKGCMC 1 cut(s) 146
BanI GGYRCC 1 cut(s) 61
BauI CACGAG 1 cut(s) 296
BfuAI ACCTGC 1 cut(s) 49
BmcAI AGTACT 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 266
BmiI GGNNCC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 212
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 263
Bse1I ACTGG 1 cut(s) 65
BseLI CCNNNNNNNGG 2 cut(s) 71, 263
BseMII CTCAG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 65
BseRI GAGGAG 1 cut(s) 284
BseSI GKGCMC 1 cut(s) 146
BshFI GGCC 1 cut(s) 268
BshNI GGYRCC 1 cut(s) 61
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 2 cut(s) 71, 263
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 146
BspANI GGCC 1 cut(s) 268
BspCNI CTCAG 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 63
BspMI ACCTGC 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 61
BsrI ACTGG 1 cut(s) 65
BssSI CACGAG 1 cut(s) 296
Bst2BI CACGAG 1 cut(s) 296
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 237
BstDEI CTNAG 2 cut(s) 14, 21
BstSLI GKGCMC 1 cut(s) 146
BsuRI GGCC 1 cut(s) 268
BveI ACCTGC 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 266
Csp6I GTAC 3 cut(s) 62, 126, 182
CviAII CATG 1 cut(s) 282
CviJI RGCY 3 cut(s) 28, 223, 268
CviKI_1 RGCY 3 cut(s) 28, 223, 268
CviQI GTAC 3 cut(s) 62, 126, 182
DdeI CTNAG 2 cut(s) 14, 21
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
FaeI CATG 1 cut(s) 285
FaiI YATR 2 cut(s) 202, 283
FaqI GGGAC 1 cut(s) 263
FatI CATG 1 cut(s) 281
HaeIII GGCC 1 cut(s) 268
Hin1II CATG 1 cut(s) 285
HinfI GANTC 1 cut(s) 287
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 4 cut(s) 164, 218, 229, 298
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 3 cut(s) 52, 134, 204
HpyF3I CTNAG 2 cut(s) 14, 21
HpySE526I ACGT 1 cut(s) 6
Hsp92II CATG 1 cut(s) 285
KpnI GGTACC 1 cut(s) 65
LpnPI CCDG 2 cut(s) 44, 78
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 2 cut(s) 110, 260
MboII GAAGA 2 cut(s) 251, 254
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 2 cut(s) 117, 301
MnlI CCTC 2 cut(s) 69, 305
MseI TTAA 1 cut(s) 120
MslI CAYNNNNRTG 1 cut(s) 35
NlaIII CATG 1 cut(s) 285
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 287
PflMI CCANNNNNTGG 1 cut(s) 71
PshBI ATTAAT 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 266
RsaI GTAC 3 cut(s) 63, 127, 183
RsaNI GTAC 3 cut(s) 62, 126, 182
RseI CAYNNNNRTG 1 cut(s) 35
SaqAI TTAA 1 cut(s) 120
Sau96I GGNCC 1 cut(s) 266
ScaI AGTACT 1 cut(s) 127
SduI GDGCHC 1 cut(s) 146
SetI ASST 4 cut(s) 9, 30, 63, 225
SmiMI CAYNNNNRTG 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 2 cut(s) 117, 301
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 1 cut(s) 9
TasI AATT 2 cut(s) 117, 301
TatI WGTACW 2 cut(s) 125, 181
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TseFI GTSAC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 260
Van91I CCANNNNNTGG 1 cut(s) 71
VspI ATTAAT 1 cut(s) 120
ZrmI AGTACT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.