Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000790

Physical Location & Seq

Genomic Coordinates Reverse (-)

46146623 .. 46147069

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019089

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGACATTCTGCTTAGTCCAAAGAAGCTCATCAAAATGACCAGGAACTGGCAGAAGGTACCAGTTATTGGGAGGAGGAAAACTTCATACCAAAGAGCCGCTGTCGACGGTAATAAGATGAATGGTAGTACTGCAGATAAAGGCACCTTCGTTATCTACACCCTTGACAAGAAGCGCTTTGTGTTTCCCCTGTCCTATCTTTCTAACTACATTTTCCAAGAGCTATTCAATATGTCTGAAGAAGAAATTGGAATATCGAGTAGTGATCCTATTGTTTTCCCATGTGATTCACGCCTCATGGACTACATAGTCTCACTCGTGAAGCTTGGAATGAGTGTAGATTTGGAGAAAGCATTACTCAACTCTATCATTAGAAGTAGTTGCTCCATATCTACTTTTGATAGTCAAGGACAGACAAGCCAACAATTACTCCTCTGTGGGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

149

Amino Acids

16.73

Weight (kDa)

8.99

Isoelectric Point (pI)

54.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	8 - 106	1e-24	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29420 AT1G29420 AT1G29430 AT1G29440 AT1G29450 AT1G29450 AT1G29460 AT1G29460 AT1G29490 AT1G29500 AT1G29510 AT5G27780
fragaria_vesca	FvH4_6g27350
malus_domestica	MD07G1151400.v1.1 MD12G1088000.v1.1 MD12G1088100.v1.1 MD12G1088200.v1.1
prunus_persica	Prupe.7G048400_v2.0.a1 Prupe.7G048500_v2.0.a1 Prupe.7G048600_v2.0.a1
pyrus_communis	pycom12g07490 pycom12g07500
rosa_chinensis	RchiOBHm_Chr2g0129571 RchiOBHm_Chr2g0129581 RchiOBHm_Chr2g0131961 RchiOBHm_Chr2g0131971 RchiOBHm_Chr2g0131981
rosa_laevigata	RLG00000019088 RLG00000019089 RLG00000019220 RLG00000019221
rosa_multiflora	Rmu_sc0000584.1_g000015 Rmu_sc0000584.1_g000016 Rmu_sc0000584.1_g000020 Rmu_sc0000999.1_g000048
rosa_roxburghii	Rroxscaffold_2G00112430 Rroxscaffold_2G00112440 Rroxscaffold_2G00114520
rosa_rugosa	Rorug02G0287200 Rorug02G0287300 Rorug02G0287400 Rorug02G0301300 Rorug02G0301400 Rorug02G0301500 Rorug02G0301600
rosa_samantha	Rh2AG338800 Rh2AG338900 Rh2AG339000 Rh2AG353000 Rh2BG347600 Rh2BG347700 Rh2BG360400 Rh2BG360500 Rh2BG360600 Rh2CG326200 Rh2CG326300 Rh2CG326400 Rh2CG338300 Rh2DG366000 Rh2DG366100 Rh2DG377300 Rh2DG377400 Rh7DG159500 Rh7DG377700
rosa_wichuraiana	Rw2G028020 Rw2G028030 Rw2G028760 Rw2G028770 Rw2G028790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	308
Acc65I	GGTACC	1 cut(s)	58
AccB1I	GGYRCC	2 cut(s)	58, 143
AccB7I	CCANNNNNTGG	2 cut(s)	48, 68
AccI	GTMKAC	1 cut(s)	105
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	258
AfaI	GTAC	3 cut(s)	60, 130, 443
AfeI	AGCGCT	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	48, 68
AgsI	TTSAA	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	41
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	3 cut(s)	28, 223, 325
AluI	AGCT	3 cut(s)	28, 223, 325
Alw26I	GTCTC	1 cut(s)	316
AlwI	GGATC	1 cut(s)	260
AlwNI	CAGNNNCTG	1 cut(s)	48
Aor51HI	AGCGCT	1 cut(s)	176
Asp718I	GGTACC	1 cut(s)	58
AspLEI	GCGC	1 cut(s)	177
BanI	GGYRCC	2 cut(s)	58, 143
BauI	CACGAG	1 cut(s)	317
BciT130I	CCWGG	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	316
BfmI	CTRYAG	1 cut(s)	132
BfoI	RGCGCY	1 cut(s)	178
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
BmcAI	AGTACT	1 cut(s)	130
Bme1390I	CCNGG	1 cut(s)	43
BmiI	GGNNCC	2 cut(s)	60, 145
BmrFI	CCNGG	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 68
Bse1I	ACTGG	2 cut(s)	53, 62
BseBI	CCWGG	1 cut(s)	43
BseLI	CCNNNNNNNGG	2 cut(s)	48, 68
BseNI	ACTGG	2 cut(s)	53, 62
BseRI	GAGGAG	2 cut(s)	88, 422
BshNI	GGYRCC	2 cut(s)	58, 143
BslI	CCNNNNNNNGG	2 cut(s)	48, 68
BsmAI	GTCTC	1 cut(s)	316
Bsp143I	GATC	1 cut(s)	265
BspACI	CCGC	1 cut(s)	99
BspLI	GGNNCC	2 cut(s)	60, 145
BspMAI	CTGCAG	1 cut(s)	136
BspPI	GGATC	1 cut(s)	260
BspT107I	GGYRCC	2 cut(s)	58, 143
BsrI	ACTGG	2 cut(s)	53, 62
BssMI	GATC	1 cut(s)	265
BssSI	CACGAG	1 cut(s)	317
Bst2BI	CACGAG	1 cut(s)	317
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	14
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	265
BstNI	CCWGG	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	41
BstSFI	CTRYAG	1 cut(s)	132
CaiI	CAGNNNCTG	1 cut(s)	48
CfoI	GCGC	1 cut(s)	177
Csp6I	GTAC	3 cut(s)	59, 129, 442
CviAII	CATG	2 cut(s)	282, 298
CviJI	RGCY	5 cut(s)	28, 98, 223, 325, 420
CviKI_1	RGCY	5 cut(s)	28, 98, 223, 325, 420
CviQI	GTAC	3 cut(s)	59, 129, 442
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
DrdI	GACNNNNNNGTC	1 cut(s)	308
DseDI	GACNNNNNNGTC	1 cut(s)	308
Eco47III	AGCGCT	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	258
EcoRII	CCWGG	1 cut(s)	41
FaeI	CATG	2 cut(s)	285, 301
FaiI	YATR	6 cut(s)	88, 233, 283, 299, 308, 389
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FatI	CATG	2 cut(s)	281, 297
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	99
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	1 cut(s)	99
HaeII	RGCGCY	1 cut(s)	178
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	285, 301
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	1 cut(s)	287
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	319
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	49, 157
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4V	TGCA	1 cut(s)	134
HpyF3I	CTNAG	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	285, 301
HspAI	GCGC	1 cut(s)	175
KpnI	GGTACC	1 cut(s)	62
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	389
LpnPI	CCDG	5 cut(s)	28, 34, 55, 75, 203
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	2 cut(s)	251, 254
MluCI	AATT	2 cut(s)	246, 425
MnlI	CCTC	4 cut(s)	66, 69, 305, 443
MslI	CAYNNNNRTG	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	43
MvaI	CCWGG	1 cut(s)	43
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	2 cut(s)	285, 301
NlaIV	GGNNCC	2 cut(s)	60, 145
PfeI	GAWTC	1 cut(s)	287
PflMI	CCANNNNNTGG	2 cut(s)	48, 68
PkrI	GCNGC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	2 cut(s)	60, 145
PstI	CTGCAG	1 cut(s)	136
PstNI	CAGNNNCTG	1 cut(s)	48
RsaI	GTAC	3 cut(s)	60, 130, 443
RsaNI	GTAC	3 cut(s)	59, 129, 442
RseI	CAYNNNNRTG	1 cut(s)	35
SalI	GTCGAC	1 cut(s)	104
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	1 cut(s)	265
ScaI	AGTACT	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	43
SetI	ASST	5 cut(s)	30, 60, 149, 225, 327
SfcI	CTRYAG	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	2 cut(s)	246, 425
SsiI	CCGC	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	41
TaaI	ACNGT	1 cut(s)	110
TaqI	TCGA	2 cut(s)	105, 257
TasI	AATT	2 cut(s)	246, 425
TatI	WGTACW	1 cut(s)	128
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	287
TspDTI	ATGAA	2 cut(s)	75, 134
Van91I	CCANNNNNTGG	2 cut(s)	48, 68
XmiI	GTMKAC	1 cut(s)	105
ZrmI	AGTACT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.