Rh7DG377700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000790
Physical Location & Seq
Reverse (-)
51321027 .. 51321317
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG377700.1

Sequence Viewer

Length: 210 bp
ATGGCTCAGATCGATCTCCATCTTTACCTCCTTGGCGGCTCTCTCACAGACCAAAGGAAGCCATGGCCACAGTGCATGTCGTATCCTGCCGTCCCCGGCTTGGCAGCGAATCGTTTGGTGGCACATGAATTAGAATTAGGTCGAGTGTATTCTCGCATAGATTCACATGAAAAACCCAGTCCAGACTATATGCTGCAGCAATGGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.91

Weight (kDa)

6.23

Isoelectric Point (pI)

57.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 36
AcoI YGGCCR 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 100
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 3 cut(s) 104, 193, 196
AsuC2I CCSGG 1 cut(s) 96
BalI TGGCCA 1 cut(s) 67
BbvI GCAGC 2 cut(s) 116, 180
BccI CCATC 1 cut(s) 27
BceAI ACGGC 1 cut(s) 74
BciVI GTATCC 1 cut(s) 93
BcnI CCSGG 1 cut(s) 96
BfmI CTRYAG 2 cut(s) 194, 206
BfuI GTATCC 1 cut(s) 93
BisI GCNGC 4 cut(s) 37, 105, 194, 197
BlsI GCNGC 4 cut(s) 38, 106, 195, 198
Bme1390I CCNGG 1 cut(s) 96
BmrFI CCNGG 1 cut(s) 96
BmrI ACTGGG 1 cut(s) 171
BmuI ACTGGG 1 cut(s) 171
BpuMI CCSGG 1 cut(s) 96
Bsa29I ATCGAT 1 cut(s) 12
BsaBI GATNNNNATC 1 cut(s) 18
BsaJI CCNNGG 3 cut(s) 31, 62, 94
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 177
Bse3DI GCAATG 1 cut(s) 206
Bse8I GATNNNNATC 1 cut(s) 18
BseCI ATCGAT 1 cut(s) 12
BseDI CCNNGG 3 cut(s) 31, 62, 94
BseJI GATNNNNATC 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMI GCAATG 1 cut(s) 206
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 177
BseXI GCAGC 2 cut(s) 116, 180
BshFI GGCC 1 cut(s) 67
BshVI ATCGAT 1 cut(s) 12
BsiSI CCGG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 1 cut(s) 67
Bsp143I GATC 2 cut(s) 9, 13
Bsp19I CCATGG 1 cut(s) 62
BspACI CCGC 1 cut(s) 36
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 1 cut(s) 19
BspDI ATCGAT 1 cut(s) 12
BspMAI CTGCAG 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 206
BsrI ACTGG 1 cut(s) 177
BssECI CCNNGG 3 cut(s) 31, 62, 94
BssMI GATC 2 cut(s) 9, 13
BssT1I CCWWGG 2 cut(s) 31, 62
Bst4CI ACNGT 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 62
BstKTI GATC 2 cut(s) 12, 16
BstMBI GATC 2 cut(s) 9, 13
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstNSI RCATGY 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 94
BstSFI CTRYAG 2 cut(s) 194, 206
BstV1I GCAGC 2 cut(s) 116, 180
Bsu15I ATCGAT 1 cut(s) 12
BsuI GTATCC 1 cut(s) 93
BsuRI GGCC 1 cut(s) 67
BsuTUI ATCGAT 1 cut(s) 12
BtgI CCRYGG 1 cut(s) 62
BtsIMutI CAGTG 1 cut(s) 77
ClaI ATCGAT 1 cut(s) 12
CviAII CATG 4 cut(s) 63, 76, 125, 167
CviJI RGCY 6 cut(s) 5, 39, 61, 67, 99, 205
CviKI_1 RGCY 6 cut(s) 5, 39, 61, 67, 99, 205
DdeI CTNAG 1 cut(s) 6
DpnI GATC 2 cut(s) 11, 15
DpnII GATC 2 cut(s) 9, 13
EaeI YGGCCR 1 cut(s) 65
Eco130I CCWWGG 2 cut(s) 31, 62
EcoT14I CCWWGG 2 cut(s) 31, 62
ErhI CCWWGG 2 cut(s) 31, 62
FaeI CATG 4 cut(s) 66, 79, 128, 170
FaiI YATR 7 cut(s) 64, 77, 126, 158, 168, 189, 191
FaqI GGGAC 1 cut(s) 77
FatI CATG 4 cut(s) 62, 75, 124, 166
Fnu4HI GCNGC 4 cut(s) 37, 105, 194, 197
Fsp4HI GCNGC 4 cut(s) 37, 105, 194, 197
GluI GCNGC 4 cut(s) 37, 105, 194, 197
HaeIII GGCC 1 cut(s) 67
HapII CCGG 1 cut(s) 96
Hin1II CATG 4 cut(s) 66, 79, 128, 170
HinfI GANTC 2 cut(s) 109, 161
HpaII CCGG 1 cut(s) 96
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 1 cut(s) 182
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4V TGCA 2 cut(s) 75, 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 4 cut(s) 66, 79, 128, 170
Kzo9I GATC 2 cut(s) 9, 13
LpnPI CCDG 4 cut(s) 99, 109, 190, 195
Lsp1109I GCAGC 2 cut(s) 116, 180
MalI GATC 2 cut(s) 11, 15
MboI GATC 2 cut(s) 9, 13
MlsI TGGCCA 1 cut(s) 67
MluCI AATT 2 cut(s) 128, 134
MluNI TGGCCA 1 cut(s) 67
MnlI CCTC 1 cut(s) 38
Mox20I TGGCCA 1 cut(s) 67
MscI TGGCCA 1 cut(s) 67
Msp20I TGGCCA 1 cut(s) 67
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 96
MwoI GCNNNNNNNGC 1 cut(s) 202
NciI CCSGG 1 cut(s) 96
NcoI CCATGG 1 cut(s) 62
NdeII GATC 2 cut(s) 9, 13
NlaIII CATG 4 cut(s) 66, 79, 128, 170
NspI RCATGY 1 cut(s) 79
PfeI GAWTC 2 cut(s) 109, 161
PkrI GCNGC 4 cut(s) 38, 106, 195, 198
PstI CTGCAG 1 cut(s) 198
SatI GCNGC 4 cut(s) 37, 105, 194, 197
Sau3AI GATC 2 cut(s) 9, 13
ScrFI CCNGG 1 cut(s) 96
SetI ASST 2 cut(s) 30, 142
SfcI CTRYAG 2 cut(s) 194, 206
Sse9I AATT 2 cut(s) 128, 134
SsiI CCGC 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 94
StyI CCWWGG 2 cut(s) 31, 62
TaaI ACNGT 1 cut(s) 72
TaqI TCGA 2 cut(s) 12, 142
TasI AATT 2 cut(s) 128, 134
TauI GCSGC 1 cut(s) 39
TfiI GAWTC 2 cut(s) 109, 161
TscAI CASTG 1 cut(s) 77
TseI GCWGC 3 cut(s) 104, 193, 196
TspDTI ATGAA 2 cut(s) 141, 183
TspRI CASTG 1 cut(s) 77
XceI RCATGY 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.