RchiOBHm_Chr2g0129581

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000790
Physical Location & Seq
Reverse (-)
45230557 .. 45230886
330 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50121

Sequence Viewer

Length: 330 bp
ATGAATACTAGTACTGCAGATAAAGGCACCTTCGTTATCTACACCCTTGACAAGAGGCGCTTTGTGCTTCCCTTGTCCTATCTTTCTAACTACATTTTCCAAGAGCTATTCAAGATGTCTGAAGAAGAATTTGGAATATCGAGTAGTGATCCTATTGTTATCCCATGCGATTCACGCCTCATGGACTACATAGTCTCACTAGTGAAGCTTGGAATGAGTGTAGAGTTGGAGAAAGCTTTACTCAACTCTGTCATTAGAAGTAGTTGCTCCATATCTACTTTTGATCGTCGAGGACAGACAAGCCAACATTTACTCCTCTGTGGTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

109

Amino Acids

12.36

Weight (kDa)

5.74

Isoelectric Point (pI)

55.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 3 - 67 2.2e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 191
AccB1I GGYRCC 1 cut(s) 26
AclWI GGATC 1 cut(s) 143
AcsI RAATTY 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 141
AfaI GTAC 1 cut(s) 13
AgsI TTSAA 1 cut(s) 112
AhlI ACTAGT 2 cut(s) 8, 199
AjuI GAANNNNNNNTTGG 2 cut(s) 114, 146
AluBI AGCT 3 cut(s) 106, 208, 236
AluI AGCT 3 cut(s) 106, 208, 236
Alw26I GTCTC 1 cut(s) 199
AlwI GGATC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 128
AspLEI GCGC 1 cut(s) 60
BanI GGYRCC 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 199
BcuI ACTAGT 2 cut(s) 8, 199
BfaI CTAG 2 cut(s) 9, 200
BfmI CTRYAG 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 61
BmcAI AGTACT 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 28
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
BseRI GAGGAG 1 cut(s) 305
BshNI GGYRCC 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 199
Bsp143I GATC 2 cut(s) 148, 283
BspLI GGNNCC 1 cut(s) 28
BspMAI CTGCAG 1 cut(s) 19
BspPI GGATC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 26
BssMI GATC 2 cut(s) 148, 283
BstH2I RGCGCY 1 cut(s) 61
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 2 cut(s) 151, 286
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 2 cut(s) 148, 283
BstMWI GCNNNNNNNGC 2 cut(s) 64, 174
BstSFI CTRYAG 1 cut(s) 15
CfoI GCGC 1 cut(s) 60
Csp6I GTAC 1 cut(s) 12
CviAII CATG 2 cut(s) 165, 181
CviJI RGCY 4 cut(s) 106, 208, 236, 303
CviKI_1 RGCY 4 cut(s) 106, 208, 236, 303
CviQI GTAC 1 cut(s) 12
DpnI GATC 2 cut(s) 150, 285
DpnII GATC 2 cut(s) 148, 283
DrdI GACNNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 141
FaeI CATG 2 cut(s) 168, 184
FaiI YATR 4 cut(s) 166, 182, 191, 272
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FatI CATG 2 cut(s) 164, 180
FspBI CTAG 2 cut(s) 9, 200
GlaI GCGC 1 cut(s) 59
HaeII RGCGCY 1 cut(s) 61
HhaI GCGC 1 cut(s) 60
Hin1II CATG 2 cut(s) 168, 184
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HindIII AAGCTT 2 cut(s) 206, 234
HinfI GANTC 1 cut(s) 170
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 1 cut(s) 112
Hpy99I CGWCG 1 cut(s) 291
HpyAV CCTTC 1 cut(s) 40
HpyCH4V TGCA 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 174
Hsp92II CATG 2 cut(s) 168, 184
HspAI GCGC 1 cut(s) 58
Kzo9I GATC 2 cut(s) 148, 283
LmnI GCTCC 1 cut(s) 272
MaeI CTAG 2 cut(s) 9, 200
MaeIII GTNAC 1 cut(s) 323
MalI GATC 2 cut(s) 150, 285
MboI GATC 2 cut(s) 148, 283
MboII GAAGA 2 cut(s) 134, 137
MluCI AATT 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 4 cut(s) 48, 188, 284, 326
MwoI GCNNNNNNNGC 2 cut(s) 64, 174
NdeII GATC 2 cut(s) 148, 283
NlaIII CATG 2 cut(s) 168, 184
NlaIV GGNNCC 1 cut(s) 28
PfeI GAWTC 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 28
PstI CTGCAG 1 cut(s) 19
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
Sau3AI GATC 2 cut(s) 148, 283
ScaI AGTACT 1 cut(s) 13
SetI ASST 4 cut(s) 32, 108, 210, 238
SfcI CTRYAG 1 cut(s) 15
SpeI ACTAGT 2 cut(s) 8, 199
Sse9I AATT 1 cut(s) 128
SspMI CTAG 2 cut(s) 9, 200
TaqI TCGA 2 cut(s) 140, 289
TasI AATT 1 cut(s) 128
TatI WGTACW 1 cut(s) 11
TfiI GAWTC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 128
XspI CTAG 2 cut(s) 9, 200
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.