Rw2G028030

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000790
Physical Location & Seq
Forward (+)
44605299 .. 44605946
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G028030.1

Sequence Viewer

Length: 648 bp
ATGCTCAGCCCAAAAAGGCTCATTAAAATGGCTAGAAAGTGGCAGATGAATGACGTTATGGGGAGCAAAAAAAATTCATACCCGAGAGGAGTTGGTAGAAAGTCATGTGATACTACTGCAGCGAAAGGCAATTTTGTTATTTACACCCTTGACAAGGCGCGTTTTGTGCTTCCCTTATCTTATCTTGGTAGCTACATTTTCCAAAAGCTTTTCAAAATGTCTGAAGAAGAGTTCGGAGTATCAAGCAATGAGCCTATCGTATTACCATGTGATTCATTCCTCATGAATTACATTGTGTCACTTGTCCACCTTGGAATGAGCTTAGATTTGGAGAAAGCTATTGTCAAATTTGTGAGTAGGAGTAGTTGCTCTGTATCTAGTTTCAGTCGAGAACAAACAAGCCAACACTTCATCTTTGTGGTCAATGGCGGATCCAAGAATGAAAGTTCGGGTGGGCTAGAACTTCTTAACCAAAAAAAAAAAAACGTTAACCAGCAGGGCCTCCAGTTTCCAGTCATATGTCATATTAAGAAGAAAGAAAAAAAAAGTAACCAAATTATATTGAATAACCCCATACATGAGGAAGTAGAACCTATTGGTGCACCAACATCACTTGAATACACCAACACACTACTTTGCATGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

215

Amino Acids

24.18

Weight (kDa)

9.4

Isoelectric Point (pI)

47.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 5 - 101 1.1e-24 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 160
AciI CCGC 1 cut(s) 429
AclI AACGTT 1 cut(s) 486
AclWI GGATC 2 cut(s) 426, 439
AcsI RAATTY 2 cut(s) 73, 347
AcuI CTGAAG 1 cut(s) 243
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 3 cut(s) 214, 565, 617
AluBI AGCT 4 cut(s) 192, 208, 321, 338
AluI AGCT 4 cut(s) 192, 208, 321, 338
Alw21I GWGCWC 1 cut(s) 604
Alw44I GTGCAC 1 cut(s) 600
AlwI GGATC 2 cut(s) 426, 439
Ama87I CYCGRG 1 cut(s) 82
AoxI GGCC 1 cut(s) 499
ApaLI GTGCAC 1 cut(s) 600
ApeKI GCWGC 1 cut(s) 119
ApoI RAATTY 2 cut(s) 73, 347
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 1 cut(s) 499
AvaI CYCGRG 1 cut(s) 82
BaeGI GKGCMC 1 cut(s) 604
BamHI GGATCC 1 cut(s) 431
Bbv12I GWGCWC 1 cut(s) 604
BbvI GCAGC 1 cut(s) 131
BfaI CTAG 3 cut(s) 33, 378, 458
BfmI CTRYAG 1 cut(s) 117
BisI GCNGC 1 cut(s) 120
BlpI GCTNAGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 121
BmeT110I CYCGRG 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 499
BmiI GGNNCC 1 cut(s) 433
BpmI CTGGAG 1 cut(s) 488
Bpu1102I GCTNAGC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 310
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 2 cut(s) 505, 512
Bse3DI GCAATG 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 310
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMI GCAATG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 19
BseNI ACTGG 2 cut(s) 505, 512
BseRI GAGGAG 1 cut(s) 102
BseSI GKGCMC 1 cut(s) 604
BseXI GCAGC 1 cut(s) 131
Bsh1236I CGCG 1 cut(s) 160
BshFI GGCC 1 cut(s) 501
BsiHKAI GWGCWC 1 cut(s) 604
BsiHKCI CYCGRG 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 154
BsnI GGCC 1 cut(s) 501
BsoBI CYCGRG 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 604
Bsp143I GATC 1 cut(s) 431
Bsp1720I GCTNAGC 1 cut(s) 5
BspACI CCGC 1 cut(s) 429
BspANI GGCC 1 cut(s) 501
BspCNI CTCAG 1 cut(s) 18
BspFNI CGCG 1 cut(s) 160
BspHI TCATGA 1 cut(s) 282
BspLI GGNNCC 1 cut(s) 433
BspMAI CTGCAG 1 cut(s) 121
BspPI GGATC 2 cut(s) 426, 439
BsrDI GCAATG 1 cut(s) 253
BsrI ACTGG 2 cut(s) 505, 512
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 1 cut(s) 431
BssT1I CCWWGG 1 cut(s) 310
Bst6I CTCTTC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 641
BstDEI CTNAG 2 cut(s) 5, 322
BstENI CCTNNNNNAGG 1 cut(s) 152
BstFNI CGCG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 1 cut(s) 434
BstMBI GATC 1 cut(s) 431
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNSI RCATGY 1 cut(s) 643
BstSFI CTRYAG 1 cut(s) 117
BstSLI GKGCMC 1 cut(s) 604
BstUI CGCG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 131
BstX2I RGATCY 1 cut(s) 431
BstYI RGATCY 1 cut(s) 431
BsuRI GGCC 1 cut(s) 501
Cac8I GCNNGC 1 cut(s) 641
CciI TCATGA 1 cut(s) 282
CfoI GCGC 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 499
CviAII CATG 5 cut(s) 105, 267, 283, 578, 640
DdeI CTNAG 2 cut(s) 5, 322
DpnI GATC 1 cut(s) 433
DpnII GATC 1 cut(s) 431
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
EciI GGCGGA 1 cut(s) 444
Eco130I CCWWGG 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 82
EcoNI CCTNNNNNAGG 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 499
EcoT14I CCWWGG 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 310
FaeI CATG 5 cut(s) 108, 270, 286, 581, 643
FatI CATG 5 cut(s) 104, 266, 282, 577, 639
FauNDI CATATG 1 cut(s) 518
Fnu4HI GCNGC 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 3 cut(s) 33, 378, 458
GlaI GCGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 120
GsuI CTGGAG 1 cut(s) 488
HaeIII GGCC 1 cut(s) 501
HhaI GCGC 1 cut(s) 160
Hin1II CATG 5 cut(s) 108, 270, 286, 581, 643
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 1 cut(s) 272
HpaI GTTAAC 1 cut(s) 490
Hpy166II GTNNAC 3 cut(s) 307, 490, 602
Hpy188I TCNGA 2 cut(s) 223, 236
Hpy188III TCNNGA 2 cut(s) 283, 389
Hpy8I GTNNAC 3 cut(s) 307, 490, 602
HpyCH4IV ACGT 2 cut(s) 54, 486
HpyCH4V TGCA 3 cut(s) 119, 602, 639
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 2 cut(s) 5, 322
HpySE526I ACGT 2 cut(s) 54, 486
Hsp92II CATG 5 cut(s) 108, 270, 286, 581, 643
HspAI GCGC 1 cut(s) 158
KspAI GTTAAC 1 cut(s) 490
Kzo9I GATC 1 cut(s) 431
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 4 cut(s) 482, 506, 518, 525
Lsp1109I GCAGC 1 cut(s) 131
MaeI CTAG 3 cut(s) 33, 378, 458
MaeII ACGT 2 cut(s) 54, 486
MaeIII GTNAC 2 cut(s) 297, 548
MalI GATC 1 cut(s) 433
MboI GATC 1 cut(s) 431
MboII GAAGA 3 cut(s) 236, 239, 544
MflI RGATCY 1 cut(s) 431
MhlI GDGCHC 1 cut(s) 604
MluCI AATT 5 cut(s) 73, 130, 286, 347, 555
MnlI CCTC 4 cut(s) 80, 290, 512, 574
MseI TTAA 4 cut(s) 24, 468, 489, 528
MslI CAYNNNNRTG 2 cut(s) 26, 416
MvnI CGCG 1 cut(s) 160
MwoI GCNNNNNNNGC 1 cut(s) 166
NdeI CATATG 1 cut(s) 518
NdeII GATC 1 cut(s) 431
NlaIII CATG 5 cut(s) 108, 270, 286, 581, 643
NlaIV GGNNCC 1 cut(s) 433
NmuCI GTSAC 1 cut(s) 297
NspI RCATGY 1 cut(s) 643
PaeI GCATGC 1 cut(s) 643
PagI TCATGA 1 cut(s) 282
PfeI GAWTC 1 cut(s) 272
PkrI GCNGC 1 cut(s) 121
Psp1406I AACGTT 1 cut(s) 486
PspN4I GGNNCC 1 cut(s) 433
PspPI GGNCC 1 cut(s) 499
PstI CTGCAG 1 cut(s) 121
PsuI RGATCY 1 cut(s) 431
RseI CAYNNNNRTG 2 cut(s) 26, 416
SaqAI TTAA 4 cut(s) 24, 468, 489, 528
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 431
Sau96I GGNCC 1 cut(s) 499
SduI GDGCHC 1 cut(s) 604
SetI ASST 8 cut(s) 57, 194, 210, 312, 323, 340, 489, 595
SfcI CTRYAG 1 cut(s) 117
SmiMI CAYNNNNRTG 2 cut(s) 26, 416
SphI GCATGC 1 cut(s) 643
Sse9I AATT 5 cut(s) 73, 130, 286, 347, 555
SsiI CCGC 1 cut(s) 429
SspMI CTAG 3 cut(s) 33, 378, 458
StyI CCWWGG 1 cut(s) 310
TaiI ACGT 2 cut(s) 57, 489
TaqI TCGA 1 cut(s) 388
TasI AATT 5 cut(s) 73, 130, 286, 347, 555
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 4 cut(s) 24, 468, 489, 528
Tru9I TTAA 4 cut(s) 24, 468, 489, 528
TseFI GTSAC 1 cut(s) 297
TseI GCWGC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 297
TspDTI ATGAA 6 cut(s) 62, 66, 264, 299, 400, 456
VneI GTGCAC 1 cut(s) 600
XagI CCTNNNNNAGG 1 cut(s) 152
XapI RAATTY 2 cut(s) 73, 347
XceI RCATGY 1 cut(s) 643
XspI CTAG 3 cut(s) 33, 378, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.