Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000790

Physical Location & Seq

Genomic Coordinates Reverse (-)

10305553 .. 10306595

Gene Structure 1043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G29450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGATGAACACAAAAAAGCTAATCAAGATGGCCAAGAAGTGGCAACAAAGAGCAGCCCTCCACAGGAAAAGGATCTCATTTCAAAGATCAAGTAGTGCTACTAGCTCAACCGCTGCAGAGAAGGGTTGTTTTGTGGTTTACACGACAGACAGCACACGCTTTGCTTTTCCGCTAAGTTACCTGAGTAACTCTGTTTTCCAAGAACTCTTGAAGATCTCTGAAGAAGAGTTTGGCCTCCCAACTGGTGGACCTATCACATCGCCATTCGATTCAGTTTTCTTGGAGTATCTCATCAAATTGGTCCAAAGACGAATGGATGCAGACACAGAAAAGGCTTTGTTAATGTCAATCTCTAGTGCTAGATGTTCTTCCCAATGCTCTTTGAAACTACAAGAACGTAGTACTCAACAATTGCTTGTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006810 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009914 GO:0009926 GO:0010817 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046620 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0080086 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

141

Amino Acids

15.98

Weight (kDa)

9.67

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	5 - 100	6.5e-28	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29420 AT1G29420 AT1G29430 AT1G29440 AT1G29450 AT1G29450 AT1G29460 AT1G29460 AT1G29490 AT1G29500 AT1G29510 AT5G27780
fragaria_vesca	FvH4_6g27350
malus_domestica	MD07G1151400.v1.1 MD12G1088000.v1.1 MD12G1088100.v1.1 MD12G1088200.v1.1
prunus_persica	Prupe.7G048400_v2.0.a1 Prupe.7G048500_v2.0.a1 Prupe.7G048600_v2.0.a1
pyrus_communis	pycom12g07490 pycom12g07500
rosa_chinensis	RchiOBHm_Chr2g0129571 RchiOBHm_Chr2g0129581 RchiOBHm_Chr2g0131961 RchiOBHm_Chr2g0131971 RchiOBHm_Chr2g0131981
rosa_laevigata	RLG00000019088 RLG00000019089 RLG00000019220 RLG00000019221
rosa_multiflora	Rmu_sc0000584.1_g000015 Rmu_sc0000584.1_g000016 Rmu_sc0000584.1_g000020 Rmu_sc0000999.1_g000048
rosa_roxburghii	Rroxscaffold_2G00112430 Rroxscaffold_2G00112440 Rroxscaffold_2G00114520
rosa_rugosa	Rorug02G0287200 Rorug02G0287300 Rorug02G0287400 Rorug02G0301300 Rorug02G0301400 Rorug02G0301500 Rorug02G0301600
rosa_samantha	Rh2AG338800 Rh2AG338900 Rh2AG339000 Rh2AG353000 Rh2BG347600 Rh2BG347700 Rh2BG360400 Rh2BG360500 Rh2BG360600 Rh2CG326200 Rh2CG326300 Rh2CG326400 Rh2CG338300 Rh2DG366000 Rh2DG366100 Rh2DG377300 Rh2DG377400 Rh7DG159500 Rh7DG377700
rosa_wichuraiana	Rw2G028020 Rw2G028030 Rw2G028760 Rw2G028770 Rw2G028790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	39, 245
AciI	CCGC	2 cut(s)	111, 170
AclWI	GGATC	1 cut(s)	80
AcoI	YGGCCR	1 cut(s)	30
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	403
AfiI	CCNNNNNNNGG	3 cut(s)	39, 63, 245
AgsI	TTSAA	3 cut(s)	83, 211, 385
AjuI	GAANNNNNNNTTGG	2 cut(s)	213, 245
AluBI	AGCT	2 cut(s)	19, 105
AluI	AGCT	2 cut(s)	19, 105
AlwI	GGATC	1 cut(s)	80
AoxI	GGCC	2 cut(s)	30, 232
ApeKI	GCWGC	2 cut(s)	53, 113
AspS9I	GGNCC	2 cut(s)	248, 301
AvaII	GGWCC	2 cut(s)	248, 301
BalI	TGGCCA	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	65, 100
BccI	CCATC	1 cut(s)	22
BfaI	CTAG	3 cut(s)	102, 354, 360
BfmI	CTRYAG	1 cut(s)	114
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	2 cut(s)	54, 114
BlsI	GCNGC	2 cut(s)	55, 115
BmcAI	AGTACT	1 cut(s)	403
Bme18I	GGWCC	2 cut(s)	248, 301
BmgT120I	GGNCC	2 cut(s)	248, 301
BmsI	GCATC	1 cut(s)	307
BplI	GAGNNNNNCTC	2 cut(s)	42, 74
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 63, 245
Bse1I	ACTGG	1 cut(s)	247
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	3 cut(s)	39, 63, 245
BseMII	CTCAG	1 cut(s)	173
BseNI	ACTGG	1 cut(s)	247
BseXI	GCAGC	2 cut(s)	65, 100
BshFI	GGCC	2 cut(s)	32, 234
BslI	CCNNNNNNNGG	3 cut(s)	39, 63, 245
BsnI	GGCC	2 cut(s)	32, 234
Bsp143I	GATC	3 cut(s)	72, 86, 213
BspACI	CCGC	2 cut(s)	111, 170
BspANI	GGCC	2 cut(s)	32, 234
BspCNI	CTCAG	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	118
BspPI	GGATC	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	247
BssMI	GATC	3 cut(s)	72, 86, 213
Bst6I	CTCTTC	1 cut(s)	219
BstDEI	CTNAG	2 cut(s)	173, 182
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	3 cut(s)	75, 89, 216
BstMBI	GATC	3 cut(s)	72, 86, 213
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	65, 100
BstX2I	RGATCY	2 cut(s)	72, 213
BstYI	RGATCY	2 cut(s)	72, 213
BsuRI	GGCC	2 cut(s)	32, 234
BtgZI	GCGATG	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	322
Cfr13I	GGNCC	2 cut(s)	248, 301
Csp6I	GTAC	1 cut(s)	402
CviJI	RGCY	6 cut(s)	19, 32, 56, 105, 234, 335
CviKI_1	RGCY	6 cut(s)	19, 32, 56, 105, 234, 335
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	2 cut(s)	173, 182
DpnI	GATC	3 cut(s)	74, 88, 215
DpnII	GATC	3 cut(s)	72, 86, 213
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco47I	GGWCC	2 cut(s)	248, 301
Eco57I	CTGAAG	1 cut(s)	240
Fnu4HI	GCNGC	2 cut(s)	54, 114
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	2 cut(s)	54, 114
FspBI	CTAG	3 cut(s)	102, 354, 360
GluI	GCNGC	2 cut(s)	54, 114
HaeIII	GGCC	2 cut(s)	32, 234
HinfI	GANTC	1 cut(s)	269
Hpy166II	GTNNAC	2 cut(s)	139, 248
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	2 cut(s)	25, 208
Hpy8I	GTNNAC	2 cut(s)	139, 248
HpyAV	CCTTC	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	2 cut(s)	116, 320
HpyF3I	CTNAG	2 cut(s)	173, 182
HpySE526I	ACGT	1 cut(s)	397
Kzo9I	GATC	3 cut(s)	72, 86, 213
LpnPI	CCDG	3 cut(s)	49, 194, 228
Lsp1109I	GCAGC	2 cut(s)	65, 100
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	3 cut(s)	102, 354, 360
MaeII	ACGT	1 cut(s)	397
MaeIII	GTNAC	2 cut(s)	176, 185
MalI	GATC	3 cut(s)	74, 88, 215
MboI	GATC	3 cut(s)	72, 86, 213
MboII	GAAGA	4 cut(s)	223, 233, 236, 360
MfeI	CAATTG	1 cut(s)	410
MflI	RGATCY	2 cut(s)	72, 213
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	2 cut(s)	296, 410
MluNI	TGGCCA	1 cut(s)	32
MnlI	CCTC	2 cut(s)	68, 245
Mox20I	TGGCCA	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	32
MseI	TTAA	1 cut(s)	341
Msp20I	TGGCCA	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	113
MunI	CAATTG	1 cut(s)	410
NdeII	GATC	3 cut(s)	72, 86, 213
PfeI	GAWTC	1 cut(s)	269
PflMI	CCANNNNNTGG	2 cut(s)	39, 245
PkrI	GCNGC	2 cut(s)	55, 115
PspPI	GGNCC	2 cut(s)	248, 301
PstI	CTGCAG	1 cut(s)	118
PsuI	RGATCY	2 cut(s)	72, 213
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	2 cut(s)	54, 114
Sau3AI	GATC	3 cut(s)	72, 86, 213
Sau96I	GGNCC	2 cut(s)	248, 301
ScaI	AGTACT	1 cut(s)	403
SetI	ASST	5 cut(s)	21, 107, 183, 253, 400
SfaNI	GCATC	1 cut(s)	307
SfcI	CTRYAG	1 cut(s)	114
SinI	GGWCC	2 cut(s)	248, 301
Sse9I	AATT	2 cut(s)	296, 410
SsiI	CCGC	2 cut(s)	111, 170
SspMI	CTAG	3 cut(s)	102, 354, 360
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	1 cut(s)	267
TasI	AATT	2 cut(s)	296, 410
TatI	WGTACW	1 cut(s)	401
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TseI	GCWGC	2 cut(s)	53, 113
TspDTI	ATGAA	1 cut(s)	20
Van91I	CCANNNNNTGG	2 cut(s)	39, 245
VpaK11BI	GGWCC	2 cut(s)	248, 301
XspI	CTAG	3 cut(s)	102, 354, 360
ZrmI	AGTACT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.