Rh2BG360400

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000790
Physical Location & Seq
Forward (+)
49907294 .. 49907773
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG360400.1

Sequence Viewer

Length: 480 bp
ATGGACGTGATGCTCAGCCCGAAGAAGCTCATCAAAATGACCAAGAAGTTGCAGAAGGTACCTGTTATTGGGAGGAAGAGAACTTCACCCCCAACAGTCATTGGCAGTAACAAGATGAATAGTACTACAGCAGATAAGGGCACTTTTGTCATCTACACCCTTGACAAGAGACGTTTTATGCTTCCTTTATCCTATCTCTGCAACCACATTTTCCAAGAGCTCTTTAAGATGTCTGAAGAAGAGTTAGGAATATCGAGAAGCGGTCCTATCGTACTCCCGTGCGATTCACTCCTAGTGAATTATATAGTCTCACTTGTTCAGCTTGGAATGAGTATAGAAGTGGAGAAAGCTATACTCAATTCTATTATTAGGCTTAGGAGTAGCTACTTCTTGTCTACTCCAGACAAACCAACAATTACTCCTTTGTGGTTTCTGAATAGATCAGGTCTATGTTGTACGTATATAGTTAGATTTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

159

Amino Acids

18.1

Weight (kDa)

9.76

Isoelectric Point (pI)

65.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 8 - 105 1.6e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 58
AccB1I GGYRCC 1 cut(s) 58
AccI GTMKAC 1 cut(s) 395
AciI CCGC 1 cut(s) 261
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 4 cut(s) 60, 124, 273, 457
AfiI CCNNNNNNNGG 1 cut(s) 68
AjiI CACGTC 1 cut(s) 7
AluBI AGCT 5 cut(s) 28, 220, 322, 350, 384
AluI AGCT 5 cut(s) 28, 220, 322, 350, 384
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 2 cut(s) 163, 313
Asp718I GGTACC 1 cut(s) 58
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 78
AvaII GGWCC 1 cut(s) 263
BaeGI GKGCMC 1 cut(s) 143
BanI GGYRCC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 222
BcoDI GTCTC 2 cut(s) 163, 313
BfaI CTAG 2 cut(s) 293, 478
BfmI CTRYAG 1 cut(s) 126
BlpI GCTNAGC 1 cut(s) 14
BmcAI AGTACT 1 cut(s) 124
Bme18I GGWCC 1 cut(s) 263
BmgBI CACGTC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 384
Bpu10I CCTNAGC 1 cut(s) 374
Bpu1102I GCTNAGC 1 cut(s) 14
BsaAI YACGTR 1 cut(s) 459
BsaXI ACNNNNNCTCC 2 cut(s) 403, 433
Bsc4I CCNNNNNNNGG 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 28
BseSI GKGCMC 1 cut(s) 143
BshNI GGYRCC 1 cut(s) 58
BsiHKAI GWGCWC 1 cut(s) 222
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 2 cut(s) 163, 313
BsmBI CGTCTC 1 cut(s) 163
Bsp1286I GDGCHC 2 cut(s) 143, 222
Bsp143I GATC 1 cut(s) 440
Bsp1720I GCTNAGC 1 cut(s) 14
BspACI CCGC 1 cut(s) 261
BspCNI CTCAG 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 60
BspT107I GGYRCC 1 cut(s) 58
BssMI GATC 1 cut(s) 440
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 2 cut(s) 71, 234
BstBAI YACGTR 1 cut(s) 459
BstDEI CTNAG 2 cut(s) 14, 374
BstKTI GATC 1 cut(s) 443
BstMAI GTCTC 2 cut(s) 163, 313
BstMBI GATC 1 cut(s) 440
BstSFI CTRYAG 1 cut(s) 126
BstSLI GKGCMC 1 cut(s) 143
BstSNI TACGTA 1 cut(s) 459
BtrI CACGTC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 4 cut(s) 59, 123, 272, 456
CviJI RGCY 7 cut(s) 18, 28, 220, 322, 350, 373, 384
CviKI_1 RGCY 7 cut(s) 18, 28, 220, 322, 350, 373, 384
CviQI GTAC 4 cut(s) 59, 123, 272, 456
DdeI CTNAG 2 cut(s) 14, 374
DpnI GATC 1 cut(s) 442
DpnII GATC 1 cut(s) 440
Eam1104I CTCTTC 2 cut(s) 71, 234
EarI CTCTTC 2 cut(s) 71, 234
Ecl136II GAGCTC 1 cut(s) 220
Eco105I TACGTA 1 cut(s) 459
Eco24I GRGCYC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 222
Esp3I CGTCTC 1 cut(s) 163
FaiI YATR 8 cut(s) 179, 303, 305, 335, 353, 451, 462, 464
FblI GTMKAC 1 cut(s) 395
FriOI GRGCYC 1 cut(s) 222
FspBI CTAG 2 cut(s) 293, 478
GsuI CTGGAG 1 cut(s) 384
HinfI GANTC 1 cut(s) 284
HphI GGTGA 1 cut(s) 78
Hpy166II GTNNAC 1 cut(s) 396
Hpy188I TCNGA 2 cut(s) 235, 435
Hpy188III TCNNGA 2 cut(s) 255, 401
Hpy8I GTNNAC 1 cut(s) 396
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 3 cut(s) 6, 172, 458
HpyCH4V TGCA 2 cut(s) 52, 201
HpyF3I CTNAG 2 cut(s) 14, 374
HpySE526I ACGT 3 cut(s) 6, 172, 458
KpnI GGTACC 1 cut(s) 62
Kzo9I GATC 1 cut(s) 440
LpnPI CCDG 3 cut(s) 75, 414, 429
MaeI CTAG 2 cut(s) 293, 478
MaeII ACGT 3 cut(s) 6, 172, 458
MaeIII GTNAC 1 cut(s) 107
MalI GATC 1 cut(s) 442
MboI GATC 1 cut(s) 440
MboII GAAGA 4 cut(s) 34, 88, 248, 251
MhlI GDGCHC 2 cut(s) 143, 222
MluCI AATT 3 cut(s) 298, 358, 414
MnlI CCTC 1 cut(s) 66
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 1 cut(s) 35
NdeII GATC 1 cut(s) 440
NlaIV GGNNCC 1 cut(s) 60
PfeI GAWTC 1 cut(s) 284
Ppu21I YACGTR 1 cut(s) 459
Psp124BI GAGCTC 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 263
RsaI GTAC 4 cut(s) 60, 124, 273, 457
RsaNI GTAC 4 cut(s) 59, 123, 272, 456
RseI CAYNNNNRTG 1 cut(s) 35
SacI GAGCTC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 225
Sau3AI GATC 1 cut(s) 440
Sau96I GGNCC 1 cut(s) 263
ScaI AGTACT 1 cut(s) 124
SduI GDGCHC 2 cut(s) 143, 222
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 35
SnaBI TACGTA 1 cut(s) 459
Sse9I AATT 3 cut(s) 298, 358, 414
SsiI CCGC 1 cut(s) 261
SspMI CTAG 2 cut(s) 293, 478
SstI GAGCTC 1 cut(s) 222
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 3 cut(s) 9, 175, 461
TaqI TCGA 1 cut(s) 254
TasI AATT 3 cut(s) 298, 358, 414
TatI WGTACW 1 cut(s) 122
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TspDTI ATGAA 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 395
XspI CTAG 2 cut(s) 293, 478
ZrmI AGTACT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.