Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000790

Physical Location & Seq

Genomic Coordinates Reverse (-)

37611441 .. 37611893

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00112440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGACGTGATGCTCAGCCCGAAGAAGCTCATCAAAATGACCAAGAAGTTGCAGAAGGTACCTGTTATTGGGAGGAAGAGAACTTCACAGTACCCAACAGTCATTGGCAGTAACAAGATGAATAGTACTACAGCAGATAAGGGCACTTTTGTCATCTACACCCTTGACAAGAGACGTTTTATGCTTCCTTTATCCTATATCTGTAGCCACATTTTCCAAGAGCTCTTTAAGATGTCTGAAGAAGAGTTAGGAATATCGAGAAGCGGTCCTATCGTACTCCCGTGCGATTCACTCCTCATGAATTATATAGTCTCACTTGTTCAGCTTGGAATGAGTTTAGAAGTGGAGAAAGCTATCCTCAATTCTATTATTAGGCTTAGGAGTAGCTACTTCTTGTCTACTTTTGATCAAGAACTACAGACAAACCAACAATTACTCCTTTGTGGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

150

Amino Acids

17.12

Weight (kDa)

9.45

Isoelectric Point (pI)

63.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	8 - 106	1.2e-23	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29420 AT1G29420 AT1G29430 AT1G29440 AT1G29450 AT1G29450 AT1G29460 AT1G29460 AT1G29490 AT1G29500 AT1G29510 AT5G27780
fragaria_vesca	FvH4_6g27350
malus_domestica	MD07G1151400.v1.1 MD12G1088000.v1.1 MD12G1088100.v1.1 MD12G1088200.v1.1
prunus_persica	Prupe.7G048400_v2.0.a1 Prupe.7G048500_v2.0.a1 Prupe.7G048600_v2.0.a1
pyrus_communis	pycom12g07490 pycom12g07500
rosa_chinensis	RchiOBHm_Chr2g0129571 RchiOBHm_Chr2g0129581 RchiOBHm_Chr2g0131961 RchiOBHm_Chr2g0131971 RchiOBHm_Chr2g0131981
rosa_laevigata	RLG00000019088 RLG00000019089 RLG00000019220 RLG00000019221
rosa_multiflora	Rmu_sc0000584.1_g000015 Rmu_sc0000584.1_g000016 Rmu_sc0000584.1_g000020 Rmu_sc0000999.1_g000048
rosa_roxburghii	Rroxscaffold_2G00112430 Rroxscaffold_2G00112440 Rroxscaffold_2G00114520
rosa_rugosa	Rorug02G0287200 Rorug02G0287300 Rorug02G0287400 Rorug02G0301300 Rorug02G0301400 Rorug02G0301500 Rorug02G0301600
rosa_samantha	Rh2AG338800 Rh2AG338900 Rh2AG339000 Rh2AG353000 Rh2BG347600 Rh2BG347700 Rh2BG360400 Rh2BG360500 Rh2BG360600 Rh2CG326200 Rh2CG326300 Rh2CG326400 Rh2CG338300 Rh2DG366000 Rh2DG366100 Rh2DG377300 Rh2DG377400 Rh7DG159500 Rh7DG377700
rosa_wichuraiana	Rw2G028020 Rw2G028030 Rw2G028760 Rw2G028770 Rw2G028790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	58
AccB1I	GGYRCC	1 cut(s)	58
AccI	GTMKAC	1 cut(s)	398
AciI	CCGC	1 cut(s)	264
AcuI	CTGAAG	1 cut(s)	258
AfaI	GTAC	4 cut(s)	60, 92, 127, 276
AfiI	CCNNNNNNNGG	1 cut(s)	68
AjiI	CACGTC	1 cut(s)	7
AluBI	AGCT	5 cut(s)	28, 223, 325, 353, 387
AluI	AGCT	5 cut(s)	28, 223, 325, 353, 387
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	2 cut(s)	166, 316
Asp718I	GGTACC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	266
BaeGI	GKGCMC	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	225
BclI	TGATCA	1 cut(s)	406
BcoDI	GTCTC	2 cut(s)	166, 316
BfmI	CTRYAG	3 cut(s)	129, 202, 416
BlpI	GCTNAGC	1 cut(s)	14
BmcAI	AGTACT	1 cut(s)	127
Bme18I	GGWCC	1 cut(s)	266
BmgBI	CACGTC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	377
Bpu1102I	GCTNAGC	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	28
BseRI	GAGGAG	1 cut(s)	284
BseSI	GKGCMC	1 cut(s)	146
BshNI	GGYRCC	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	225
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	2 cut(s)	166, 316
BsmBI	CGTCTC	1 cut(s)	166
Bsp1286I	GDGCHC	2 cut(s)	146, 225
Bsp143I	GATC	1 cut(s)	406
Bsp1720I	GCTNAGC	1 cut(s)	14
BspACI	CCGC	1 cut(s)	264
BspCNI	CTCAG	1 cut(s)	27
BspHI	TCATGA	1 cut(s)	297
BspLI	GGNNCC	1 cut(s)	60
BspT107I	GGYRCC	1 cut(s)	58
BssMI	GATC	1 cut(s)	406
Bst4CI	ACNGT	2 cut(s)	90, 100
Bst6I	CTCTTC	2 cut(s)	71, 237
BstDEI	CTNAG	2 cut(s)	14, 377
BstKTI	GATC	1 cut(s)	409
BstMAI	GTCTC	2 cut(s)	166, 316
BstMBI	GATC	1 cut(s)	406
BstSFI	CTRYAG	3 cut(s)	129, 202, 416
BstSLI	GKGCMC	1 cut(s)	146
BtrI	CACGTC	1 cut(s)	7
CciI	TCATGA	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	266
Csp6I	GTAC	4 cut(s)	59, 91, 126, 275
CviAII	CATG	1 cut(s)	298
CviJI	RGCY	9 cut(s)	18, 28, 207, 223, 325, 353, 376, 387, 447
CviKI_1	RGCY	9 cut(s)	18, 28, 207, 223, 325, 353, 376, 387, 447
CviQI	GTAC	4 cut(s)	59, 91, 126, 275
DdeI	CTNAG	2 cut(s)	14, 377
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
Eam1104I	CTCTTC	2 cut(s)	71, 237
EarI	CTCTTC	2 cut(s)	71, 237
Ecl136II	GAGCTC	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	266
Eco53kI	GAGCTC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	225
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	1 cut(s)	301
FaiI	YATR	5 cut(s)	182, 198, 299, 306, 308
FatI	CATG	1 cut(s)	297
FbaI	TGATCA	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	398
FriOI	GRGCYC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	301
HinfI	GANTC	1 cut(s)	287
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	2 cut(s)	238, 452
Hpy188III	TCNNGA	3 cut(s)	258, 298, 410
Hpy8I	GTNNAC	1 cut(s)	399
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	2 cut(s)	90, 100
HpyCH4IV	ACGT	2 cut(s)	6, 175
HpyCH4V	TGCA	1 cut(s)	52
HpyF3I	CTNAG	2 cut(s)	14, 377
HpySE526I	ACGT	2 cut(s)	6, 175
Hsp92II	CATG	1 cut(s)	301
KpnI	GGTACC	1 cut(s)	62
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	1 cut(s)	406
LpnPI	CCDG	1 cut(s)	75
MaeII	ACGT	2 cut(s)	6, 175
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	1 cut(s)	408
MboI	GATC	1 cut(s)	406
MboII	GAAGA	4 cut(s)	34, 88, 251, 254
MhlI	GDGCHC	2 cut(s)	146, 225
MluCI	AATT	3 cut(s)	301, 361, 431
MnlI	CCTC	3 cut(s)	66, 305, 368
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	35
NdeII	GATC	1 cut(s)	406
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	1 cut(s)	60
PagI	TCATGA	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	287
Psp124BI	GAGCTC	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	266
RsaI	GTAC	4 cut(s)	60, 92, 127, 276
RsaNI	GTAC	4 cut(s)	59, 91, 126, 275
RseI	CAYNNNNRTG	1 cut(s)	35
SacI	GAGCTC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	228
Sau3AI	GATC	1 cut(s)	406
Sau96I	GGNCC	1 cut(s)	266
ScaI	AGTACT	1 cut(s)	127
SduI	GDGCHC	2 cut(s)	146, 225
SetI	ASST	9 cut(s)	9, 30, 60, 64, 178, 225, 327, 355, 389
SfcI	CTRYAG	3 cut(s)	129, 202, 416
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	3 cut(s)	301, 361, 431
SsiI	CCGC	1 cut(s)	264
SstI	GAGCTC	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	90, 100
TaiI	ACGT	2 cut(s)	9, 178
TaqI	TCGA	1 cut(s)	257
TasI	AATT	3 cut(s)	301, 361, 431
TatI	WGTACW	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TspDTI	ATGAA	2 cut(s)	134, 314
VpaK11BI	GGWCC	1 cut(s)	266
XmiI	GTMKAC	1 cut(s)	398
ZrmI	AGTACT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.