Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000790

Physical Location & Seq

Genomic Coordinates Reverse (-)

10307352 .. 10308246

Gene Structure 895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G29460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGATCAACACTAAGAAACTACTCAAGATGGCCAAGAAATGGCAACAAAGAGCTGCCCTCAAGAGGAAAAGAATCTCATTCCAAAGATCAACTACTACTACTACTACTACTACTACTACTACTAGCAGCTCAACTGCTGTGGAGAAGGGCTGTTTCGTGGTTTACACGGTTGATAAAATCCGCTTTGCTTTTCCGTTAAGTTACTTGAACAACTCTGTTTTCGAAGAGCTCTTGAAGATATCTGAAGAAGAGTTCGGCCTCAGGGCGGGTGGACCAATCACGTTGCCGTTCGACTCGGTTTTCTTGGAGTATCTCATCAAATTTATCGAACGAAGAATGGATGGAGATACAGAAAAAGCTCTTTTAATGTCAATCTCTAGTGCTAGATGCTCTATGCAACCACAAGAACAACAGAGTGGTTATACCCAACAATTACTTGTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006810 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009914 GO:0009926 GO:0010817 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046620 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0080086 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

148

Amino Acids

16.92

Weight (kDa)

9.58

Isoelectric Point (pI)

52.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	5 - 109	2.7e-29	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29420 AT1G29420 AT1G29430 AT1G29440 AT1G29450 AT1G29450 AT1G29460 AT1G29460 AT1G29490 AT1G29500 AT1G29510 AT5G27780
fragaria_vesca	FvH4_6g27350
malus_domestica	MD07G1151400.v1.1 MD12G1088000.v1.1 MD12G1088100.v1.1 MD12G1088200.v1.1
prunus_persica	Prupe.7G048400_v2.0.a1 Prupe.7G048500_v2.0.a1 Prupe.7G048600_v2.0.a1
pyrus_communis	pycom12g07490 pycom12g07500
rosa_chinensis	RchiOBHm_Chr2g0129571 RchiOBHm_Chr2g0129581 RchiOBHm_Chr2g0131961 RchiOBHm_Chr2g0131971 RchiOBHm_Chr2g0131981
rosa_laevigata	RLG00000019088 RLG00000019089 RLG00000019220 RLG00000019221
rosa_multiflora	Rmu_sc0000584.1_g000015 Rmu_sc0000584.1_g000016 Rmu_sc0000584.1_g000020 Rmu_sc0000999.1_g000048
rosa_roxburghii	Rroxscaffold_2G00112430 Rroxscaffold_2G00112440 Rroxscaffold_2G00114520
rosa_rugosa	Rorug02G0287200 Rorug02G0287300 Rorug02G0287400 Rorug02G0301300 Rorug02G0301400 Rorug02G0301500 Rorug02G0301600
rosa_samantha	Rh2AG338800 Rh2AG338900 Rh2AG339000 Rh2AG353000 Rh2BG347600 Rh2BG347700 Rh2BG360400 Rh2BG360500 Rh2BG360600 Rh2CG326200 Rh2CG326300 Rh2CG326400 Rh2CG338300 Rh2DG366000 Rh2DG366100 Rh2DG377300 Rh2DG377400 Rh7DG159500 Rh7DG377700
rosa_wichuraiana	Rw2G028020 Rw2G028030 Rw2G028760 Rw2G028770 Rw2G028790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	39
AciI	CCGC	2 cut(s)	181, 266
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	320
AcuI	CTGAAG	1 cut(s)	264
AfiI	CCNNNNNNNGG	3 cut(s)	39, 63, 265
AgsI	TTSAA	2 cut(s)	208, 235
AluBI	AGCT	4 cut(s)	53, 129, 229, 359
AluI	AGCT	4 cut(s)	53, 129, 229, 359
Alw21I	GWGCWC	1 cut(s)	231
AoxI	GGCC	2 cut(s)	30, 256
ApeKI	GCWGC	2 cut(s)	53, 126
ApoI	RAATTY	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	272
AsuII	TTCGAA	1 cut(s)	222
AvaII	GGWCC	1 cut(s)	272
AxyI	CCTNAGG	1 cut(s)	260
BalI	TGGCCA	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	40, 138
BccI	CCATC	2 cut(s)	22, 335
BceAI	ACGGC	1 cut(s)	271
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	3 cut(s)	123, 378, 384
BisI	GCNGC	2 cut(s)	54, 127
BlsI	GCNGC	2 cut(s)	55, 128
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmsI	GCATC	1 cut(s)	377
BplI	GAGNNNNNCTC	2 cut(s)	42, 74
Bpu14I	TTCGAA	1 cut(s)	222
BpuEI	CTTGAG	2 cut(s)	8, 44
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 63, 265
Bse21I	CCTNAGG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	3 cut(s)	39, 63, 265
BseMII	CTCAG	1 cut(s)	274
BseXI	GCAGC	2 cut(s)	40, 138
BshFI	GGCC	2 cut(s)	32, 258
BsiHKAI	GWGCWC	1 cut(s)	231
BslI	CCNNNNNNNGG	3 cut(s)	39, 63, 265
BsnI	GGCC	2 cut(s)	32, 258
Bsp119I	TTCGAA	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	3, 86
BspACI	CCGC	2 cut(s)	181, 266
BspANI	GGCC	2 cut(s)	32, 258
BspCNI	CTCAG	1 cut(s)	273
BspQI	GCTCTTC	1 cut(s)	219
BspT104I	TTCGAA	1 cut(s)	222
BssMI	GATC	2 cut(s)	3, 86
Bst4CI	ACNGT	1 cut(s)	169
Bst6I	CTCTTC	2 cut(s)	219, 243
BstBI	TTCGAA	1 cut(s)	222
BstDEI	CTNAG	2 cut(s)	12, 260
BstF5I	GGATG	1 cut(s)	346
BstKTI	GATC	2 cut(s)	6, 89
BstMBI	GATC	2 cut(s)	3, 86
BstV1I	GCAGC	2 cut(s)	40, 138
Bsu36I	CCTNAGG	1 cut(s)	260
BsuRI	GGCC	2 cut(s)	32, 258
BtsCI	GGATG	1 cut(s)	346
Cfr13I	GGNCC	1 cut(s)	272
CspCI	CAANNNNNGTGG	2 cut(s)	120, 155
CviJI	RGCY	7 cut(s)	32, 53, 129, 150, 229, 258, 359
CviKI_1	RGCY	7 cut(s)	32, 53, 129, 150, 229, 258, 359
DdeI	CTNAG	2 cut(s)	12, 260
DpnI	GATC	2 cut(s)	5, 88
DpnII	GATC	2 cut(s)	3, 86
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	2 cut(s)	219, 243
EarI	CTCTTC	2 cut(s)	219, 243
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	272
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	264
Eco81I	CCTNAGG	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	229
EcoRV	GATATC	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	231
FaiI	YATR	2 cut(s)	395, 423
FauI	CCCGC	1 cut(s)	259
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	54, 127
FokI	GGATG	1 cut(s)	353
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	54, 127
FspBI	CTAG	3 cut(s)	123, 378, 384
GluI	GCNGC	2 cut(s)	54, 127
HaeIII	GGCC	2 cut(s)	32, 258
HinfI	GANTC	2 cut(s)	72, 293
Hpy166II	GTNNAC	2 cut(s)	163, 272
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	3 cut(s)	25, 61, 232
Hpy8I	GTNNAC	2 cut(s)	163, 272
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	1 cut(s)	281
HpyCH4V	TGCA	1 cut(s)	397
HpyF3I	CTNAG	2 cut(s)	12, 260
HpySE526I	ACGT	1 cut(s)	281
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 86
LguI	GCTCTTC	1 cut(s)	219
LpnPI	CCDG	1 cut(s)	247
Lsp1109I	GCAGC	2 cut(s)	40, 138
LweI	GCATC	1 cut(s)	377
MaeI	CTAG	3 cut(s)	123, 378, 384
MaeII	ACGT	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	2 cut(s)	5, 88
MboI	GATC	2 cut(s)	3, 86
MboII	GAAGA	5 cut(s)	236, 247, 257, 260, 345
MhlI	GDGCHC	1 cut(s)	231
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	2 cut(s)	320, 431
MluNI	TGGCCA	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	3 cut(s)	57, 68, 269
Mox20I	TGGCCA	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	32
MseI	TTAA	2 cut(s)	197, 365
Msp20I	TGGCCA	1 cut(s)	32
NdeII	GATC	2 cut(s)	3, 86
NspV	TTCGAA	1 cut(s)	222
PciSI	GCTCTTC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	72
PflMI	CCANNNNNTGG	1 cut(s)	39
PkrI	GCNGC	2 cut(s)	55, 128
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
Psp124BI	GAGCTC	1 cut(s)	231
PspPI	GGNCC	1 cut(s)	272
SacI	GAGCTC	1 cut(s)	231
SapI	GCTCTTC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	197, 365
SatI	GCNGC	2 cut(s)	54, 127
Sau3AI	GATC	2 cut(s)	3, 86
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	5 cut(s)	55, 131, 231, 284, 361
SfaNI	GCATC	1 cut(s)	377
SfuI	TTCGAA	1 cut(s)	222
SinI	GGWCC	1 cut(s)	272
SmlI	CTYRAG	2 cut(s)	23, 59
SmoI	CTYRAG	2 cut(s)	23, 59
Sse9I	AATT	2 cut(s)	320, 431
SsiI	CCGC	2 cut(s)	181, 266
SspMI	CTAG	3 cut(s)	123, 378, 384
SstI	GAGCTC	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	3 cut(s)	222, 291, 327
TasI	AATT	2 cut(s)	320, 431
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	2 cut(s)	197, 365
Tru9I	TTAA	2 cut(s)	197, 365
TseI	GCWGC	2 cut(s)	53, 126
TspGWI	ACGGA	1 cut(s)	183
Van91I	CCANNNNNTGG	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	1 cut(s)	320
XspI	CTAG	3 cut(s)	123, 378, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.