FvH4_6g27350

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000790
Physical Location & Seq
Reverse (-)
20942849 .. 20943292
444 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27350.t1

Sequence Viewer

Length: 444 bp
ATGGATATTCTGCTTAGCCCAAAGAAGCTGATTAAAATGACCAGGAACTTGCCGAAGGTGTCAGTTATTGGGAGGAGGAAAGCTTCATCCCTAAGAGCTGCTAACGGTAACAGGAGGAATACTAGTGCTACAGATAAAGGCACCTTTGTTATCTACACCCTTGATGAGAGGCGCTTTGTGCTTCCCTTGTCCTATCTTTCTAACTACATTTTCCAAGAGCTATTCAAGATGTCTGAGGAAGAATTCGGAATATCGAGTAGAGATCATATTGTTTTCCCATGTGATTCACGCCTCATGAACTACATAGTCTCGCTAGTGAAGCTGGGAATGAGTGCAGATTTGGAGAAAGCATTACTCAACTCTATCATTAGAAGTAGTTGCTCCATATCTACTTTTGATCGTCGAGGACAGACAAGCAAACAATTACTTCTTTGTGGTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

148

Amino Acids

16.71

Weight (kDa)

9.86

Isoelectric Point (pI)

63.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 8 - 105 1.3e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 140
AcsI RAATTY 1 cut(s) 242
AgsI TTSAA 1 cut(s) 226
AhlI ACTAGT 1 cut(s) 122
AjnI CCWGG 1 cut(s) 41
AluBI AGCT 5 cut(s) 28, 83, 98, 220, 322
AluI AGCT 5 cut(s) 28, 83, 98, 220, 322
Alw26I GTCTC 1 cut(s) 313
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 1 cut(s) 242
AspLEI GCGC 1 cut(s) 174
BanI GGYRCC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 85
BciT130I CCWGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 313
BcuI ACTAGT 1 cut(s) 122
BfaI CTAG 2 cut(s) 123, 314
BfmI CTRYAG 1 cut(s) 129
BfoI RGCGCY 1 cut(s) 175
BisI GCNGC 1 cut(s) 99
BlpI GCTNAGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 142
BmrFI CCNGG 1 cut(s) 43
Bpu1102I GCTNAGC 1 cut(s) 14
BseBI CCWGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 86
BseMII CTCAG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 85
BseYI CCCAGC 1 cut(s) 322
BsgI GTGCAG 1 cut(s) 354
BshNI GGYRCC 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 313
Bsp143I GATC 2 cut(s) 262, 397
Bsp1720I GCTNAGC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 226
BspHI TCATGA 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 142
BspT107I GGYRCC 1 cut(s) 140
BssMI GATC 2 cut(s) 262, 397
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 107
BstDEI CTNAG 3 cut(s) 14, 92, 234
BstF5I GGATG 1 cut(s) 86
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 2 cut(s) 265, 400
BstMAI GTCTC 1 cut(s) 313
BstMBI GATC 2 cut(s) 262, 397
BstMWI GCNNNNNNNGC 2 cut(s) 178, 319
BstNI CCWGG 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 41
BstSFI CTRYAG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 86
CciI TCATGA 1 cut(s) 294
CfoI GCGC 1 cut(s) 174
CviAII CATG 2 cut(s) 279, 295
CviJI RGCY 6 cut(s) 18, 28, 83, 98, 220, 322
CviKI_1 RGCY 6 cut(s) 18, 28, 83, 98, 220, 322
DdeI CTNAG 3 cut(s) 14, 92, 234
DpnI GATC 2 cut(s) 264, 399
DpnII GATC 2 cut(s) 262, 397
EcoRI GAATTC 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 41
FaeI CATG 2 cut(s) 282, 298
FaiI YATR 5 cut(s) 267, 280, 296, 305, 386
FatI CATG 2 cut(s) 278, 294
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 2 cut(s) 123, 314
GlaI GCGC 1 cut(s) 173
GluI GCNGC 1 cut(s) 99
GsaI CCCAGC 1 cut(s) 326
HaeII RGCGCY 1 cut(s) 175
HhaI GCGC 1 cut(s) 174
Hin1II CATG 2 cut(s) 282, 298
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HindIII AAGCTT 1 cut(s) 81
HinfI GANTC 1 cut(s) 284
Hpy188I TCNGA 2 cut(s) 235, 248
Hpy188III TCNNGA 2 cut(s) 226, 295
Hpy99I CGWCG 1 cut(s) 405
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4V TGCA 1 cut(s) 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 178, 319
HpyF3I CTNAG 3 cut(s) 14, 92, 234
Hsp92II CATG 2 cut(s) 282, 298
HspAI GCGC 1 cut(s) 172
Kzo9I GATC 2 cut(s) 262, 397
LmnI GCTCC 1 cut(s) 386
LpnPI CCDG 4 cut(s) 28, 55, 97, 308
Lsp1109I GCAGC 1 cut(s) 85
MaeI CTAG 2 cut(s) 123, 314
MaeIII GTNAC 2 cut(s) 107, 437
MalI GATC 2 cut(s) 264, 399
MboI GATC 2 cut(s) 262, 397
MboII GAAGA 1 cut(s) 251
MluCI AATT 2 cut(s) 242, 422
MnlI CCTC 7 cut(s) 66, 69, 108, 162, 229, 302, 398
MseI TTAA 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 43
MvaI CCWGG 1 cut(s) 43
MwoI GCNNNNNNNGC 2 cut(s) 178, 319
NdeII GATC 2 cut(s) 262, 397
NlaIII CATG 2 cut(s) 282, 298
NlaIV GGNNCC 1 cut(s) 142
PagI TCATGA 1 cut(s) 294
PfeI GAWTC 1 cut(s) 284
PkrI GCNGC 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 41
PspFI CCCAGC 1 cut(s) 322
PspGI CCWGG 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 142
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 2 cut(s) 262, 397
ScrFI CCNGG 1 cut(s) 43
SetI ASST 7 cut(s) 30, 60, 85, 100, 146, 222, 324
SfcI CTRYAG 1 cut(s) 129
SpeI ACTAGT 1 cut(s) 122
Sse9I AATT 2 cut(s) 242, 422
SspMI CTAG 2 cut(s) 123, 314
StyD4I CCNGG 1 cut(s) 41
TaaI ACNGT 1 cut(s) 107
TaqI TCGA 2 cut(s) 254, 403
TasI AATT 2 cut(s) 242, 422
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseI GCWGC 1 cut(s) 98
TspDTI ATGAA 2 cut(s) 75, 311
XapI RAATTY 1 cut(s) 242
XspI CTAG 2 cut(s) 123, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.