Prupe.7G048400_v2.0.a1

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000790
Physical Location & Seq
Reverse (-)
8547207 .. 8549249
2043 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G048400.1

Sequence Viewer

Length: 624 bp
ATGGGGCTATCTTTGAAGCCCAAACCACCGGACCAGGGACAAACGGTATCGCTATCTTGGCAAAAACCCAAACCTGACTGGATTAAAATTAATTGCGATGGTGTCTGGCAACAGCAGACCTTGCGGGTTAGAGTTGGGTGGGTGGTCAATTTATTTATTTCCATGGACAAGATAATCATCAGCCCCAAGAGGCTCCTTAAAATTGCTAGCAAGTGGCAGAAGAGAGATGCTTTGGGGAGGAACAAAAACTCATCTCCAAGAGTAGTTGCCAACAATTTGATGAATAGTATGGTGGGTGAAAAGGGAACCTTTGTTATCTACACCACTGACAACACCCGTTTCGTGCTGCCTTTAACCTATCTCTCTAACTACATTTTCCTAGAGCTCTTCAAGATGTCTGAAGAAGAGTTTGGACTCTCAACTAGTTCTGGGCCTATCGTCTTGCCGTGCGACTCATTCTTCATGAATTACGTAGTCTCACTTCTCCAGCGAGGAATGACTACAGATTTGGAGAGAGCTTTGCAGGCCAAAGCTCTCATTAGTAGTCGCTGCTCAAGTTCTGCAGTACATCAAGGAAAAACAAGCAACCCAACTATTCCTTTGTGGTTACTGCTGAGCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

208

Amino Acids

23.31

Weight (kDa)

9.8

Isoelectric Point (pI)

36.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 124
AcuI CTGAAG 1 cut(s) 420
AfaI GTAC 1 cut(s) 567
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 2 cut(s) 16, 391
AhlI ACTAGT 1 cut(s) 422
AjnI CCWGG 1 cut(s) 33
AjuI GAANNNNNNNTTGG 2 cut(s) 393, 425
AluBI AGCT 4 cut(s) 385, 518, 533, 621
AluI AGCT 4 cut(s) 385, 518, 533, 621
Alw21I GWGCWC 1 cut(s) 387
Alw26I GTCTC 1 cut(s) 481
AoxI GGCC 2 cut(s) 431, 525
ApeKI GCWGC 3 cut(s) 346, 549, 618
ArsI GACNNNNNNTTYG 2 cut(s) 490, 522
AseI ATTAAT 1 cut(s) 90
AspS9I GGNCC 2 cut(s) 31, 431
AsuHPI GGTGA 1 cut(s) 308
AsuNHI GCTAGC 1 cut(s) 206
AvaII GGWCC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 387
BarI GAAGNNNNNNTAC 2 cut(s) 465, 497
Bbv12I GWGCWC 1 cut(s) 387
BbvI GCAGC 2 cut(s) 333, 536
BccI CCATC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 430
BciT130I CCWGG 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 481
BcuI ACTAGT 1 cut(s) 422
BfaI CTAG 3 cut(s) 207, 380, 423
BfmI CTRYAG 2 cut(s) 501, 561
BisI GCNGC 3 cut(s) 347, 550, 619
BlpI GCTNAGC 1 cut(s) 614
BlsI GCNGC 3 cut(s) 348, 551, 620
Bme1390I CCNGG 1 cut(s) 35
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 2 cut(s) 31, 431
BmiI GGNNCC 2 cut(s) 194, 307
BmrFI CCNGG 1 cut(s) 35
BmsI GCATC 1 cut(s) 217
BmtI GCTAGC 1 cut(s) 210
BpmI CTGGAG 1 cut(s) 470
Bpu1102I GCTNAGC 1 cut(s) 614
BpuEI CTTGAG 1 cut(s) 538
BsaAI YACGTR 1 cut(s) 472
BsaBI GATNNNNATC 1 cut(s) 176
BsaJI CCNNGG 2 cut(s) 34, 162
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 83
Bse8I GATNNNNATC 1 cut(s) 176
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 2 cut(s) 34, 162
BseJI GATNNNNATC 1 cut(s) 176
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMII CTCAG 1 cut(s) 605
BseNI ACTGG 1 cut(s) 83
BseXI GCAGC 2 cut(s) 333, 536
BshFI GGCC 2 cut(s) 433, 527
BsiHKAI GWGCWC 1 cut(s) 387
BsiSI CCGG 1 cut(s) 29
BslFI GGGAC 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 481
BsmFI GGGAC 1 cut(s) 51
BsnI GGCC 2 cut(s) 433, 527
Bsp1286I GDGCHC 1 cut(s) 387
Bsp1720I GCTNAGC 1 cut(s) 614
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 1 cut(s) 124
BspANI GGCC 2 cut(s) 433, 527
BspCNI CTCAG 1 cut(s) 606
BspHI TCATGA 1 cut(s) 462
BspLI GGNNCC 2 cut(s) 194, 307
BspMAI CTGCAG 1 cut(s) 565
BspOI GCTAGC 1 cut(s) 210
BspQI GCTCTTC 1 cut(s) 392
BsrI ACTGG 1 cut(s) 83
BssECI CCNNGG 2 cut(s) 34, 162
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 3 cut(s) 215, 392, 399
BstAPI GCANNNNNTGC 1 cut(s) 121
BstBAI YACGTR 1 cut(s) 472
BstC8I GCNNGC 2 cut(s) 208, 525
BstDEI CTNAG 1 cut(s) 614
BstDSI CCRYGG 1 cut(s) 162
BstMAI GTCTC 1 cut(s) 481
BstMWI GCNNNNNNNGC 3 cut(s) 58, 121, 524
BstNI CCWGG 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 33
BstSFI CTRYAG 2 cut(s) 501, 561
BstSNI TACGTA 1 cut(s) 472
BstV1I GCAGC 2 cut(s) 333, 536
BsuRI GGCC 2 cut(s) 433, 527
BtgI CCRYGG 1 cut(s) 162
BtgZI GCGATG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 2 cut(s) 208, 525
CciI TCATGA 1 cut(s) 462
Cfr13I GGNCC 2 cut(s) 31, 431
Csp6I GTAC 1 cut(s) 566
CviAII CATG 2 cut(s) 163, 463
CviQI GTAC 1 cut(s) 566
DdeI CTNAG 1 cut(s) 614
Eam1104I CTCTTC 3 cut(s) 215, 392, 399
EarI CTCTTC 3 cut(s) 215, 392, 399
Ecl136II GAGCTC 1 cut(s) 385
Eco105I TACGTA 1 cut(s) 472
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 387
Eco47I GGWCC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 420
EcoICRI GAGCTC 1 cut(s) 385
EcoRII CCWGG 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 2 cut(s) 166, 466
FaiI YATR 3 cut(s) 164, 290, 464
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FaqI GGGAC 1 cut(s) 51
FatI CATG 2 cut(s) 162, 462
FauI CCCGC 1 cut(s) 117
Fnu4HI GCNGC 3 cut(s) 347, 550, 619
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 3 cut(s) 347, 550, 619
FspBI CTAG 3 cut(s) 207, 380, 423
GluI GCNGC 3 cut(s) 347, 550, 619
GsuI CTGGAG 1 cut(s) 470
HaeIII GGCC 2 cut(s) 433, 527
HapII CCGG 1 cut(s) 29
Hin1II CATG 2 cut(s) 166, 466
HinfI GANTC 2 cut(s) 414, 452
HpaII CCGG 1 cut(s) 29
HphI GGTGA 1 cut(s) 308
Hpy188I TCNGA 1 cut(s) 400
Hpy188III TCNNGA 2 cut(s) 391, 463
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 471
HpyCH4V TGCA 2 cut(s) 523, 563
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 121, 524
HpyF3I CTNAG 1 cut(s) 614
HpySE526I ACGT 1 cut(s) 471
Hsp92II CATG 2 cut(s) 166, 466
LguI GCTCTTC 1 cut(s) 392
LmnI GCTCC 1 cut(s) 198
LpnPI CCDG 9 cut(s) 20, 42, 47, 64, 87, 91, 414, 500, 509
Lsp1109I GCAGC 2 cut(s) 333, 536
LweI GCATC 1 cut(s) 217
MaeI CTAG 3 cut(s) 207, 380, 423
MaeII ACGT 1 cut(s) 471
MaeIII GTNAC 1 cut(s) 606
MboII GAAGA 5 cut(s) 232, 379, 413, 416, 451
MhlI GDGCHC 1 cut(s) 387
MluCI AATT 6 cut(s) 87, 91, 148, 201, 274, 466
MlyI GAGTC 2 cut(s) 408, 446
MnlI CCTC 3 cut(s) 183, 231, 485
MseI TTAA 4 cut(s) 84, 90, 198, 353
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 35
MvaI CCWGG 1 cut(s) 35
MwoI GCNNNNNNNGC 3 cut(s) 58, 121, 524
NcoI CCATGG 1 cut(s) 162
NheI GCTAGC 1 cut(s) 206
NlaIII CATG 2 cut(s) 166, 466
NlaIV GGNNCC 2 cut(s) 194, 307
PagI TCATGA 1 cut(s) 462
PciSI GCTCTTC 1 cut(s) 392
PkrI GCNGC 3 cut(s) 348, 551, 620
PleI GAGTC 2 cut(s) 408, 446
PpsI GAGTC 2 cut(s) 408, 446
Ppu21I YACGTR 1 cut(s) 472
PshBI ATTAAT 1 cut(s) 90
Psp124BI GAGCTC 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 2 cut(s) 194, 307
PspPI GGNCC 2 cut(s) 31, 431
PstI CTGCAG 1 cut(s) 565
RsaI GTAC 1 cut(s) 567
RsaNI GTAC 1 cut(s) 566
SacI GAGCTC 1 cut(s) 387
SapI GCTCTTC 1 cut(s) 392
SaqAI TTAA 4 cut(s) 84, 90, 198, 353
SatI GCNGC 3 cut(s) 347, 550, 619
Sau96I GGNCC 2 cut(s) 31, 431
SchI GAGTC 2 cut(s) 408, 446
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 1 cut(s) 387
SetI ASST 9 cut(s) 76, 122, 311, 359, 387, 474, 520, 535, 623
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 2 cut(s) 501, 561
SinI GGWCC 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 553
SmoI CTYRAG 1 cut(s) 553
SnaBI TACGTA 1 cut(s) 472
SpeI ACTAGT 1 cut(s) 422
Sse9I AATT 6 cut(s) 87, 91, 148, 201, 274, 466
SsiI CCGC 1 cut(s) 124
SspMI CTAG 3 cut(s) 207, 380, 423
SstI GAGCTC 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 33
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 1 cut(s) 474
TasI AATT 6 cut(s) 87, 91, 148, 201, 274, 466
TatI WGTACW 1 cut(s) 565
Tru1I TTAA 4 cut(s) 84, 90, 198, 353
Tru9I TTAA 4 cut(s) 84, 90, 198, 353
TscAI CASTG 1 cut(s) 331
TseI GCWGC 3 cut(s) 346, 549, 618
TspDTI ATGAA 3 cut(s) 296, 451, 479
TspRI CASTG 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 31
VspI ATTAAT 1 cut(s) 90
XspI CTAG 3 cut(s) 207, 380, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.