Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000790

Physical Location & Seq

Genomic Coordinates Reverse (-)

10302585 .. 10303418

Gene Structure 834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G29430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGATGATAAACGCAAAGAAGCTCATGAAGTTGGCCAAGAAATGGCAACAAAGAGCAGCCCTCAAGAGAAAAAGAATTTCATTTCAGAGATCAAGTATTACTACTAGCAGCCAAACAGCTGTAGAAAAGGGTTGTTTCGTGGTTTACACGGCTGATAAGATCCGTTTTTCATTTCCCTTAAGTTACCTAAGCAACACTATTGTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGTTCGGTCTCCCGACGGAAGGACCAATCACATTGCCATTCGATTCGGCCTTTTTAGAGTATCTCATCAATCTGATCCAAAGACGAATGGATGAAGATACAGAAAAGGCTCTGTTATTGTCAATCTCAAGTGCTAGAAGCTCTTTTCAACCACAACAACATTGTAGTGCTACTCAACAGTTGCTTGTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006810 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009914 GO:0009926 GO:0010817 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046620 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0080086 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

141

Amino Acids

16.14

Weight (kDa)

9.51

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	6 - 103	1.4e-28	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29420 AT1G29420 AT1G29430 AT1G29440 AT1G29450 AT1G29450 AT1G29460 AT1G29460 AT1G29490 AT1G29500 AT1G29510 AT5G27780
fragaria_vesca	FvH4_6g27350
malus_domestica	MD07G1151400.v1.1 MD12G1088000.v1.1 MD12G1088100.v1.1 MD12G1088200.v1.1
prunus_persica	Prupe.7G048400_v2.0.a1 Prupe.7G048500_v2.0.a1 Prupe.7G048600_v2.0.a1
pyrus_communis	pycom12g07490 pycom12g07500
rosa_chinensis	RchiOBHm_Chr2g0129571 RchiOBHm_Chr2g0129581 RchiOBHm_Chr2g0131961 RchiOBHm_Chr2g0131971 RchiOBHm_Chr2g0131981
rosa_laevigata	RLG00000019088 RLG00000019089 RLG00000019220 RLG00000019221
rosa_multiflora	Rmu_sc0000584.1_g000015 Rmu_sc0000584.1_g000016 Rmu_sc0000584.1_g000020 Rmu_sc0000999.1_g000048
rosa_roxburghii	Rroxscaffold_2G00112430 Rroxscaffold_2G00112440 Rroxscaffold_2G00114520
rosa_rugosa	Rorug02G0287200 Rorug02G0287300 Rorug02G0287400 Rorug02G0301300 Rorug02G0301400 Rorug02G0301500 Rorug02G0301600
rosa_samantha	Rh2AG338800 Rh2AG338900 Rh2AG339000 Rh2AG353000 Rh2BG347600 Rh2BG347700 Rh2BG360400 Rh2BG360500 Rh2BG360600 Rh2CG326200 Rh2CG326300 Rh2CG326400 Rh2CG338300 Rh2DG366000 Rh2DG366100 Rh2DG377300 Rh2DG377400 Rh7DG159500 Rh7DG377700
rosa_wichuraiana	Rw2G028020 Rw2G028030 Rw2G028760 Rw2G028770 Rw2G028790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	42
AclWI	GGATC	2 cut(s)	154, 301
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	75
AcuI	CTGAAG	1 cut(s)	246
AfiI	CCNNNNNNNGG	2 cut(s)	42, 251
AflII	CTTAAG	1 cut(s)	178
AgsI	TTSAA	2 cut(s)	217, 380
AluBI	AGCT	4 cut(s)	22, 119, 211, 372
AluI	AGCT	4 cut(s)	22, 119, 211, 372
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	2 cut(s)	154, 301
AoxI	GGCC	2 cut(s)	33, 279
ApeKI	GCWGC	2 cut(s)	56, 108
ApoI	RAATTY	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	254
BalI	TGGCCA	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	68, 120
BceAI	ACGGC	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	2 cut(s)	105, 366
BfmI	CTRYAG	1 cut(s)	120
BfrI	CTTAAG	1 cut(s)	178
BisI	GCNGC	2 cut(s)	57, 109
BlsI	GCNGC	2 cut(s)	58, 110
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BplI	GAGNNNNNCTC	2 cut(s)	45, 77
Bpu10I	CCTNAGC	1 cut(s)	188
BpuEI	CTTGAG	2 cut(s)	47, 343
BsaI	GGTCTC	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 251
Bse3DI	GCAATG	1 cut(s)	263
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	2 cut(s)	42, 251
BseMI	GCAATG	1 cut(s)	263
BseXI	GCAGC	2 cut(s)	68, 120
BshFI	GGCC	2 cut(s)	35, 281
BsiHKAI	GWGCWC	1 cut(s)	213
BslI	CCNNNNNNNGG	2 cut(s)	42, 251
BsmAI	GTCTC	1 cut(s)	245
BsnI	GGCC	2 cut(s)	35, 281
Bso31I	GGTCTC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	3 cut(s)	89, 159, 306
BspANI	GGCC	2 cut(s)	35, 281
BspHI	TCATGA	1 cut(s)	24
BspPI	GGATC	2 cut(s)	154, 301
BspTI	CTTAAG	1 cut(s)	178
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	263
BssMI	GATC	3 cut(s)	89, 159, 306
Bst4CI	ACNGT	1 cut(s)	411
Bst6I	CTCTTC	1 cut(s)	225
BstAFI	CTTAAG	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	328
BstKTI	GATC	3 cut(s)	92, 162, 309
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	3 cut(s)	89, 159, 306
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	68, 120
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	35, 281
BtsCI	GGATG	1 cut(s)	328
CciI	TCATGA	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	254
CviAII	CATG	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	3 cut(s)	91, 161, 308
DpnII	GATC	3 cut(s)	89, 159, 306
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Ecl136II	GAGCTC	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	254
Eco53kI	GAGCTC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	246
EcoICRI	GAGCTC	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	213
FaeI	CATG	1 cut(s)	28
FaiI	YATR	1 cut(s)	26
FatI	CATG	1 cut(s)	24
Fnu4HI	GCNGC	2 cut(s)	57, 109
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	2 cut(s)	57, 109
FspBI	CTAG	2 cut(s)	105, 366
GluI	GCNGC	2 cut(s)	57, 109
HaeIII	GGCC	2 cut(s)	35, 281
Hin1II	CATG	1 cut(s)	28
HinfI	GANTC	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	3 cut(s)	87, 226, 306
Hpy188III	TCNNGA	4 cut(s)	25, 64, 214, 244
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	1 cut(s)	411
HpyF3I	CTNAG	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	28
Kzo9I	GATC	3 cut(s)	89, 159, 306
Lsp1109I	GCAGC	2 cut(s)	68, 120
MaeI	CTAG	2 cut(s)	105, 366
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	3 cut(s)	91, 161, 308
MboI	GATC	3 cut(s)	89, 159, 306
MboII	GAAGA	3 cut(s)	239, 242, 338
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	1 cut(s)	213
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	1 cut(s)	75
MluNI	TGGCCA	1 cut(s)	35
MnlI	CCTC	1 cut(s)	71
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	1 cut(s)	179
MslI	CAYNNNNRTG	1 cut(s)	396
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	119
MspCI	CTTAAG	1 cut(s)	178
NdeII	GATC	3 cut(s)	89, 159, 306
NlaIII	CATG	1 cut(s)	28
PagI	TCATGA	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	275
PflMI	CCANNNNNTGG	1 cut(s)	42
PkrI	GCNGC	2 cut(s)	58, 110
Psp124BI	GAGCTC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	159
PvuII	CAGCTG	1 cut(s)	119
RseI	CAYNNNNRTG	1 cut(s)	396
SacI	GAGCTC	1 cut(s)	213
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	2 cut(s)	57, 109
Sau3AI	GATC	3 cut(s)	89, 159, 306
Sau96I	GGNCC	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	5 cut(s)	24, 121, 189, 213, 374
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	3 cut(s)	62, 178, 358
SmoI	CTYRAG	3 cut(s)	62, 178, 358
Sse9I	AATT	1 cut(s)	75
SspMI	CTAG	2 cut(s)	105, 366
SstI	GAGCTC	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	411
TaqI	TCGA	1 cut(s)	273
TaqII	GACCGA	1 cut(s)	227
TasI	AATT	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TseI	GCWGC	2 cut(s)	56, 108
TspDTI	ATGAA	4 cut(s)	41, 69, 159, 339
TspGWI	ACGGA	2 cut(s)	152, 263
Van91I	CCANNNNNTGG	1 cut(s)	42
Vha464I	CTTAAG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	75
XspI	CTAG	2 cut(s)	105, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.