Rh2CG326300

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000790
Physical Location & Seq
Reverse (-)
42280441 .. 42280878
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG326300.1

Sequence Viewer

Length: 438 bp
ATGGACGTATTGCTCAGTCCTAAGAAGCTCATCAAAATGACCAAGAAGTTGCAGAAGCAGGTACCAGTTATTGGGAGGAAAAGAACAACACAGCAAACAGTTGTTCGCAGTAACAAAATTAATAGTACTACTGCAAATAAGGGCACTTTTGTTATCTACACCCTTGACCAAAGGCGTTTTGTACTTCCCTTATCCTGTCTATGCAACTACATTTTTCAAGAGCTTCTCAAGATGTCCGAAGAAGAGTTTGGAATACCAAGTGACGGGCCTATTGTAGTCCCATGTGATTCACTCCTCGTGAATTACATTCTGTCACTTGTACAACTGGGAACGAGTTTAGCATCGGAGAAAGCTATCCTCAACCCTATCATTAGGCTTAGGAGTAGCTACTTCTTATCTACTGTTGATCGAGAACTACAGACAACACAACAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

145

Amino Acids

16.42

Weight (kDa)

9.64

Isoelectric Point (pI)

61.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 8 - 106 1.2e-25 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 436
Acc36I ACCTGC 1 cut(s) 49
Acc65I GGTACC 1 cut(s) 61
AccB1I GGYRCC 1 cut(s) 61
AccB7I CCANNNNNTGG 1 cut(s) 71
AfaI GTAC 4 cut(s) 63, 127, 183, 321
AfiI CCNNNNNNNGG 2 cut(s) 71, 263
AgsI TTSAA 1 cut(s) 218
AjuI GAANNNNNNNTTGG 2 cut(s) 231, 263
AluBI AGCT 4 cut(s) 28, 223, 353, 387
AluI AGCT 4 cut(s) 28, 223, 353, 387
AoxI GGCC 1 cut(s) 266
AseI ATTAAT 1 cut(s) 120
Asp718I GGTACC 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 266
BaeGI GKGCMC 1 cut(s) 146
BanI GGYRCC 1 cut(s) 61
BauI CACGAG 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 416
BfuAI ACCTGC 1 cut(s) 49
BmcAI AGTACT 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 266
BmiI GGNNCC 1 cut(s) 63
BmrI ACTGGG 1 cut(s) 335
BmsI GCATC 1 cut(s) 350
BmuI ACTGGG 1 cut(s) 335
Bpu10I CCTNAGC 1 cut(s) 377
BpuEI CTTGAG 1 cut(s) 212
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 263
Bse1I ACTGG 2 cut(s) 65, 330
BseLI CCNNNNNNNGG 2 cut(s) 71, 263
BseMII CTCAG 1 cut(s) 28
BseNI ACTGG 2 cut(s) 65, 330
BseRI GAGGAG 1 cut(s) 284
BseSI GKGCMC 1 cut(s) 146
BshFI GGCC 1 cut(s) 268
BshNI GGYRCC 1 cut(s) 61
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 2 cut(s) 71, 263
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 146
Bsp1407I TGTACA 1 cut(s) 319
Bsp143I GATC 1 cut(s) 406
BspANI GGCC 1 cut(s) 268
BspCNI CTCAG 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 63
BspMI ACCTGC 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 61
BsrGI TGTACA 1 cut(s) 319
BsrI ACTGG 2 cut(s) 65, 330
BssMI GATC 1 cut(s) 406
BssSI CACGAG 1 cut(s) 296
Bst2BI CACGAG 1 cut(s) 296
Bst4CI ACNGT 2 cut(s) 100, 403
Bst6I CTCTTC 1 cut(s) 237
BstAUI TGTACA 1 cut(s) 319
BstDEI CTNAG 3 cut(s) 14, 21, 377
BstKTI GATC 1 cut(s) 409
BstMBI GATC 1 cut(s) 406
BstSFI CTRYAG 1 cut(s) 416
BstSLI GKGCMC 1 cut(s) 146
BsuRI GGCC 1 cut(s) 268
BveI ACCTGC 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 266
Csp6I GTAC 4 cut(s) 62, 126, 182, 320
CviAII CATG 1 cut(s) 282
CviJI RGCY 6 cut(s) 28, 223, 268, 353, 376, 387
CviKI_1 RGCY 6 cut(s) 28, 223, 268, 353, 376, 387
CviQI GTAC 4 cut(s) 62, 126, 182, 320
DdeI CTNAG 3 cut(s) 14, 21, 377
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
FaeI CATG 1 cut(s) 285
FaiI YATR 3 cut(s) 202, 283, 436
FaqI GGGAC 1 cut(s) 263
FatI CATG 1 cut(s) 281
HaeIII GGCC 1 cut(s) 268
Hin1II CATG 1 cut(s) 285
HinfI GANTC 1 cut(s) 287
Hpy188I TCNGA 2 cut(s) 238, 346
Hpy188III TCNNGA 4 cut(s) 218, 229, 298, 410
HpyCH4III ACNGT 2 cut(s) 100, 403
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 3 cut(s) 52, 134, 204
HpyF3I CTNAG 3 cut(s) 14, 21, 377
HpySE526I ACGT 1 cut(s) 6
Hsp92II CATG 1 cut(s) 285
KpnI GGTACC 1 cut(s) 65
Kzo9I GATC 1 cut(s) 406
LpnPI CCDG 4 cut(s) 44, 78, 208, 311
LweI GCATC 1 cut(s) 350
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 3 cut(s) 110, 260, 312
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MboII GAAGA 2 cut(s) 251, 254
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 3 cut(s) 117, 301, 431
MnlI CCTC 3 cut(s) 69, 305, 368
MseI TTAA 1 cut(s) 120
MslI CAYNNNNRTG 1 cut(s) 35
NdeII GATC 1 cut(s) 406
NlaIII CATG 1 cut(s) 285
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 2 cut(s) 260, 312
PfeI GAWTC 1 cut(s) 287
PflMI CCANNNNNTGG 1 cut(s) 71
PshBI ATTAAT 1 cut(s) 120
PsiI TTATAA 1 cut(s) 436
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 266
RsaI GTAC 4 cut(s) 63, 127, 183, 321
RsaNI GTAC 4 cut(s) 62, 126, 182, 320
RseI CAYNNNNRTG 1 cut(s) 35
SaqAI TTAA 1 cut(s) 120
Sau3AI GATC 1 cut(s) 406
Sau96I GGNCC 1 cut(s) 266
ScaI AGTACT 1 cut(s) 127
SduI GDGCHC 1 cut(s) 146
SetI ASST 6 cut(s) 9, 30, 63, 225, 355, 389
SfaNI GCATC 1 cut(s) 350
SfcI CTRYAG 1 cut(s) 416
SmiMI CAYNNNNRTG 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 3 cut(s) 117, 301, 431
TaaI ACNGT 2 cut(s) 100, 403
TaiI ACGT 1 cut(s) 9
TaqI TCGA 1 cut(s) 409
TasI AATT 3 cut(s) 117, 301, 431
TatI WGTACW 3 cut(s) 125, 181, 319
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TseFI GTSAC 2 cut(s) 260, 312
Tsp45I GTSAC 2 cut(s) 260, 312
Van91I CCANNNNNTGG 1 cut(s) 71
VspI ATTAAT 1 cut(s) 120
ZrmI AGTACT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.