Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0000790

Physical Location & Seq

Genomic Coordinates Reverse (-)

10835118 .. 10835579

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1088000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGACATGATCGTTATGAGTCCCAAGAGACTCATCAAAATGGCTAGGAAATTGCAGAAGACAGCTGATATGGGGATAAAGAAAATTTCAAACCCAAGAGTAGTTGGTAACAACTCCAATAATACAGACTGCAACTCGATGGGCGAAAAGGGTACTTTTGTCATCTACACTGTTGATAAGAAGCGTTACATGCTGCCATTGTCTTATCTCCATAACTGCATTTTTCAAAAGCTTTTTAAGCTGTCTGAAGAAGAATTTGGACTCTCAAGTAGTCGGCCTATCATCGTCCCATGTGACTCGCTCTTCATGAATTACATAGTCTCACTCTTCCAACGTGGAATAACTACGGATTTGGAGAAAGCTTTACTGATCAACTCTACCATTAGTAGTAGCTGCTTCATTGGTTCTATTAATTTACATCAAGGACAAATAGGACAACAATTACTCCTTTCCGGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

154

Amino Acids

17.22

Weight (kDa)

9.36

Isoelectric Point (pI)

35.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	9 - 109	2.8e-23	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29420 AT1G29420 AT1G29430 AT1G29440 AT1G29450 AT1G29450 AT1G29460 AT1G29460 AT1G29490 AT1G29500 AT1G29510 AT5G27780
fragaria_vesca	FvH4_6g27350
malus_domestica	MD07G1151400.v1.1 MD12G1088000.v1.1 MD12G1088100.v1.1 MD12G1088200.v1.1
prunus_persica	Prupe.7G048400_v2.0.a1 Prupe.7G048500_v2.0.a1 Prupe.7G048600_v2.0.a1
pyrus_communis	pycom12g07490 pycom12g07500
rosa_chinensis	RchiOBHm_Chr2g0129571 RchiOBHm_Chr2g0129581 RchiOBHm_Chr2g0131961 RchiOBHm_Chr2g0131971 RchiOBHm_Chr2g0131981
rosa_laevigata	RLG00000019088 RLG00000019089 RLG00000019220 RLG00000019221
rosa_multiflora	Rmu_sc0000584.1_g000015 Rmu_sc0000584.1_g000016 Rmu_sc0000584.1_g000020 Rmu_sc0000999.1_g000048
rosa_roxburghii	Rroxscaffold_2G00112430 Rroxscaffold_2G00112440 Rroxscaffold_2G00114520
rosa_rugosa	Rorug02G0287200 Rorug02G0287300 Rorug02G0287400 Rorug02G0301300 Rorug02G0301400 Rorug02G0301500 Rorug02G0301600
rosa_samantha	Rh2AG338800 Rh2AG338900 Rh2AG339000 Rh2AG353000 Rh2BG347600 Rh2BG347700 Rh2BG360400 Rh2BG360500 Rh2BG360600 Rh2CG326200 Rh2CG326300 Rh2CG326400 Rh2CG338300 Rh2DG366000 Rh2DG366100 Rh2DG377300 Rh2DG377400 Rh7DG159500 Rh7DG377700
rosa_wichuraiana	Rw2G028020 Rw2G028030 Rw2G028760 Rw2G028770 Rw2G028790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	84, 254
AcuI	CTGAAG	1 cut(s)	267
AfaI	GTAC	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	90, 227
AjuI	GAANNNNNNNTTGG	2 cut(s)	240, 272
AluBI	AGCT	5 cut(s)	65, 232, 241, 362, 393
AluI	AGCT	5 cut(s)	65, 232, 241, 362, 393
Alw26I	GTCTC	2 cut(s)	22, 325
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	2 cut(s)	193, 393
ApoI	RAATTY	2 cut(s)	84, 254
AseI	ATTAAT	1 cut(s)	411
BaeI	ACNNNNGTAYC	2 cut(s)	144, 177
BbsI	GAAGAC	1 cut(s)	65
BbvI	GCAGC	2 cut(s)	180, 380
BccI	CCATC	1 cut(s)	133
BclI	TGATCA	1 cut(s)	369
BcoDI	GTCTC	2 cut(s)	22, 325
BfaI	CTAG	1 cut(s)	45
BisI	GCNGC	2 cut(s)	194, 394
BlsI	GCNGC	2 cut(s)	195, 395
BpiI	GAAGAC	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	250
BsaWI	WCCGGW	1 cut(s)	452
BsaXI	ACNNNNNCTCC	2 cut(s)	429, 459
BseXI	GCAGC	2 cut(s)	180, 380
BshFI	GGCC	1 cut(s)	277
BsiSI	CCGG	1 cut(s)	453
BslFI	GGGAC	2 cut(s)	6, 272
BsmAI	GTCTC	2 cut(s)	22, 325
BsmFI	GGGAC	2 cut(s)	6, 272
BsnI	GGCC	1 cut(s)	277
Bsp143I	GATC	2 cut(s)	9, 369
BspANI	GGCC	1 cut(s)	277
BspHI	TCATGA	1 cut(s)	306
BspQI	GCTCTTC	1 cut(s)	308
BssMI	GATC	2 cut(s)	9, 369
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	2 cut(s)	308, 332
BstKTI	GATC	2 cut(s)	12, 372
BstMAI	GTCTC	2 cut(s)	22, 325
BstMBI	GATC	2 cut(s)	9, 369
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 238
BstNSI	RCATGY	1 cut(s)	193
BstV1I	GCAGC	2 cut(s)	180, 380
BstV2I	GAAGAC	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	168
CciI	TCATGA	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	4 cut(s)	7, 190, 291, 307
CviJI	RGCY	7 cut(s)	44, 65, 232, 241, 277, 362, 393
CviKI_1	RGCY	7 cut(s)	44, 65, 232, 241, 277, 362, 393
CviQI	GTAC	1 cut(s)	153
DpnI	GATC	2 cut(s)	11, 371
DpnII	GATC	2 cut(s)	9, 369
Eam1104I	CTCTTC	2 cut(s)	308, 332
EarI	CTCTTC	2 cut(s)	308, 332
Eco57I	CTGAAG	1 cut(s)	267
FaeI	CATG	4 cut(s)	10, 193, 294, 310
FaiI	YATR	8 cut(s)	8, 17, 71, 191, 213, 292, 308, 317
FaqI	GGGAC	2 cut(s)	6, 272
FatI	CATG	4 cut(s)	6, 189, 290, 306
FbaI	TGATCA	1 cut(s)	369
Fnu4HI	GCNGC	2 cut(s)	194, 394
Fsp4HI	GCNGC	2 cut(s)	194, 394
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	2 cut(s)	194, 394
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	1 cut(s)	453
Hin1II	CATG	4 cut(s)	10, 193, 294, 310
HindIII	AAGCTT	2 cut(s)	230, 360
HinfI	GANTC	4 cut(s)	19, 30, 261, 296
HpaII	CCGG	1 cut(s)	453
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	1 cut(s)	307
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	334
HpyCH4V	TGCA	3 cut(s)	55, 132, 219
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 238
HpySE526I	ACGT	1 cut(s)	334
Hsp92II	CATG	4 cut(s)	10, 193, 294, 310
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	2 cut(s)	9, 369
LguI	GCTCTTC	1 cut(s)	308
Lsp1109I	GCAGC	2 cut(s)	180, 380
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	334
MaeIII	GTNAC	4 cut(s)	107, 185, 293, 455
MalI	GATC	2 cut(s)	11, 371
MboI	GATC	2 cut(s)	9, 369
MboII	GAAGA	5 cut(s)	70, 260, 263, 295, 319
MluCI	AATT	6 cut(s)	50, 84, 254, 310, 412, 440
MlyI	GAGTC	4 cut(s)	24, 28, 255, 290
MmeI	TCCRAC	1 cut(s)	355
MseI	TTAA	2 cut(s)	237, 411
MslI	CAYNNNNRTG	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	1 cut(s)	453
MwoI	GCNNNNNNNGC	2 cut(s)	190, 238
NdeII	GATC	2 cut(s)	9, 369
NlaIII	CATG	4 cut(s)	10, 193, 294, 310
NmuCI	GTSAC	1 cut(s)	293
NspI	RCATGY	1 cut(s)	193
PagI	TCATGA	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	308
PkrI	GCNGC	2 cut(s)	195, 395
PleI	GAGTC	4 cut(s)	24, 27, 255, 290
PpsI	GAGTC	4 cut(s)	24, 27, 255, 290
PshBI	ATTAAT	1 cut(s)	411
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
RseI	CAYNNNNRTG	1 cut(s)	38
SapI	GCTCTTC	1 cut(s)	308
SaqAI	TTAA	2 cut(s)	237, 411
SatI	GCNGC	2 cut(s)	194, 394
Sau3AI	GATC	2 cut(s)	9, 369
SchI	GAGTC	4 cut(s)	24, 28, 255, 290
SetI	ASST	6 cut(s)	67, 234, 243, 337, 364, 395
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	6 cut(s)	50, 84, 254, 310, 412, 440
SspMI	CTAG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	337
TaqI	TCGA	1 cut(s)	137
TasI	AATT	6 cut(s)	50, 84, 254, 310, 412, 440
Tru1I	TTAA	2 cut(s)	237, 411
Tru9I	TTAA	2 cut(s)	237, 411
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	2 cut(s)	193, 393
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	3 cut(s)	295, 323, 388
TspGWI	ACGGA	1 cut(s)	362
TspRI	CASTG	1 cut(s)	175
VspI	ATTAAT	1 cut(s)	411
XapI	RAATTY	2 cut(s)	84, 254
XceI	RCATGY	1 cut(s)	193
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.