Rh7DG159500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000790
Physical Location & Seq
Forward (+)
14155543 .. 14177310
21768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG159500.1

Sequence Viewer

Length: 384 bp
ATGGCTCAGATCGACCTCCATCTTTACCTCCTTGGCGGCTCTCTCACAGACCAAAGGAAGCCATGGCCACAGTGCATGTCGTATCCTGCCCTCCCCGGCTTGGCAGCGAATCGTTTCACCAGTCCTGCAGCCGCGTCAACCGAGCTTGGAAGCTTGGGTCGCATCGCCGGGAGGATCCGAAGCTCAATCAGGTCCATGTGGCTGAAAGGAGAGGCCTTTAGCTCTTCAATCTCAAAAGGAGATACAAAAGTATCAGTAATACAACATCAACATTTTCAACAGCCTAAAGCATTTTACTGCAAATATAAAATTCCCCTCCAGTCCAAGCAAGATGAGACAATCCACATTTATTTCTTCAGCTCTTCCATGGTACTCCTGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.18

Weight (kDa)

9.55

Isoelectric Point (pI)

57.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 134
AciI CCGC 2 cut(s) 36, 132
AclWI GGATC 2 cut(s) 169, 182
AcoI YGGCCR 1 cut(s) 65
AcsI RAATTY 1 cut(s) 309
AcuI CTGAAG 1 cut(s) 340
AfaI GTAC 1 cut(s) 372
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 2 cut(s) 228, 278
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 5 cut(s) 145, 153, 183, 222, 360
AluI AGCT 5 cut(s) 145, 153, 183, 222, 360
Alw26I GTCTC 1 cut(s) 329
AlwI GGATC 2 cut(s) 169, 182
AoxI GGCC 2 cut(s) 65, 213
ApeKI GCWGC 2 cut(s) 104, 128
ApoI RAATTY 1 cut(s) 309
Asp700I GAANNNNTTC 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 192
AsuC2I CCSGG 2 cut(s) 96, 169
AsuHPI GGTGA 1 cut(s) 109
AvaII GGWCC 1 cut(s) 192
BaeI ACNNNNGTAYC 4 cut(s) 234, 234, 267, 267
BalI TGGCCA 1 cut(s) 67
BamHI GGATCC 1 cut(s) 174
BbvI GCAGC 2 cut(s) 116, 140
BccI CCATC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 377
BciVI GTATCC 1 cut(s) 93
BcnI CCSGG 2 cut(s) 96, 169
BcoDI GTCTC 1 cut(s) 329
BfaI CTAG 1 cut(s) 382
BfmI CTRYAG 1 cut(s) 126
BfuI GTATCC 1 cut(s) 93
BisI GCNGC 4 cut(s) 37, 105, 129, 132
BlsI GCNGC 4 cut(s) 38, 106, 130, 133
Bme1390I CCNGG 3 cut(s) 96, 169, 377
Bme18I GGWCC 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 3 cut(s) 96, 169, 377
BmsI GCATC 1 cut(s) 171
BpmI CTGGAG 1 cut(s) 302
BpuMI CCSGG 2 cut(s) 96, 169
BsaJI CCNNGG 4 cut(s) 31, 62, 94, 366
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse1I ACTGG 2 cut(s) 120, 319
BseBI CCWGG 1 cut(s) 377
BseDI CCNNGG 4 cut(s) 31, 62, 94, 366
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 2 cut(s) 120, 319
BseXI GCAGC 2 cut(s) 116, 140
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 2 cut(s) 67, 215
BsiSI CCGG 2 cut(s) 96, 168
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 329
BsnI GGCC 2 cut(s) 67, 215
Bsp143I GATC 2 cut(s) 9, 174
Bsp19I CCATGG 2 cut(s) 62, 366
BspACI CCGC 2 cut(s) 36, 132
BspANI GGCC 2 cut(s) 67, 215
BspCNI CTCAG 1 cut(s) 19
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 1 cut(s) 176
BspMAI CTGCAG 1 cut(s) 130
BspPI GGATC 2 cut(s) 169, 182
BspQI GCTCTTC 2 cut(s) 229, 367
BsrI ACTGG 2 cut(s) 120, 319
BssECI CCNNGG 4 cut(s) 31, 62, 94, 366
BssMI GATC 2 cut(s) 9, 174
BssT1I CCWWGG 3 cut(s) 31, 62, 366
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 1 cut(s) 72
Bst6I CTCTTC 2 cut(s) 229, 367
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 2 cut(s) 62, 366
BstFNI CGCG 1 cut(s) 134
BstKTI GATC 2 cut(s) 12, 177
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 2 cut(s) 9, 174
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstNI CCWGG 1 cut(s) 377
BstNSI RCATGY 1 cut(s) 79
BstSCI CCNGG 3 cut(s) 94, 167, 375
BstSFI CTRYAG 1 cut(s) 126
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 2 cut(s) 116, 140
BstX2I RGATCY 1 cut(s) 174
BstYI RGATCY 1 cut(s) 174
BsuI GTATCC 1 cut(s) 93
BsuRI GGCC 2 cut(s) 67, 215
BtgI CCRYGG 2 cut(s) 62, 366
BtgZI GCGATG 1 cut(s) 148
BtsIMutI CAGTG 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 192
CseI GACGC 1 cut(s) 123
Csp6I GTAC 1 cut(s) 371
CviAII CATG 4 cut(s) 63, 76, 196, 367
CviQI GTAC 1 cut(s) 371
DdeI CTNAG 1 cut(s) 6
DpnI GATC 2 cut(s) 11, 176
DpnII GATC 2 cut(s) 9, 174
EaeI YGGCCR 1 cut(s) 65
Eam1104I CTCTTC 2 cut(s) 229, 367
EarI CTCTTC 2 cut(s) 229, 367
Eco130I CCWWGG 3 cut(s) 31, 62, 366
Eco147I AGGCCT 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 192
Eco57I CTGAAG 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 375
EcoT14I CCWWGG 3 cut(s) 31, 62, 366
ErhI CCWWGG 3 cut(s) 31, 62, 366
FaeI CATG 4 cut(s) 66, 79, 199, 370
FaiI YATR 5 cut(s) 64, 77, 197, 306, 368
FatI CATG 4 cut(s) 62, 75, 195, 366
Fnu4HI GCNGC 4 cut(s) 37, 105, 129, 132
Fsp4HI GCNGC 4 cut(s) 37, 105, 129, 132
FspBI CTAG 1 cut(s) 382
GluI GCNGC 4 cut(s) 37, 105, 129, 132
GsuI CTGGAG 1 cut(s) 302
HaeIII GGCC 2 cut(s) 67, 215
HapII CCGG 2 cut(s) 96, 168
HgaI GACGC 1 cut(s) 123
Hin1II CATG 4 cut(s) 66, 79, 199, 370
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HindIII AAGCTT 1 cut(s) 151
HinfI GANTC 1 cut(s) 109
HpaII CCGG 2 cut(s) 96, 168
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 2 cut(s) 9, 179
Hpy8I GTNNAC 1 cut(s) 138
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4V TGCA 3 cut(s) 75, 128, 300
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 4 cut(s) 66, 79, 199, 370
Kzo9I GATC 2 cut(s) 9, 174
LguI GCTCTTC 2 cut(s) 229, 367
LpnPI CCDG 8 cut(s) 99, 109, 133, 138, 175, 181, 332, 362
Lsp1109I GCAGC 2 cut(s) 116, 140
LweI GCATC 1 cut(s) 171
MaeI CTAG 1 cut(s) 382
MalI GATC 2 cut(s) 11, 176
MboI GATC 2 cut(s) 9, 174
MboII GAAGA 3 cut(s) 216, 346, 354
MflI RGATCY 1 cut(s) 174
MlsI TGGCCA 1 cut(s) 67
MluCI AATT 1 cut(s) 309
MluNI TGGCCA 1 cut(s) 67
MnlI CCTC 6 cut(s) 26, 38, 101, 165, 205, 326
Mox20I TGGCCA 1 cut(s) 67
MroXI GAANNNNTTC 1 cut(s) 113
MscI TGGCCA 1 cut(s) 67
Msp20I TGGCCA 1 cut(s) 67
MspI CCGG 2 cut(s) 96, 168
MspR9I CCNGG 3 cut(s) 96, 169, 377
MvaI CCWGG 1 cut(s) 377
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 159
NciI CCSGG 2 cut(s) 96, 169
NcoI CCATGG 2 cut(s) 62, 366
NdeII GATC 2 cut(s) 9, 174
NlaIII CATG 4 cut(s) 66, 79, 199, 370
NlaIV GGNNCC 1 cut(s) 176
NspI RCATGY 1 cut(s) 79
PceI AGGCCT 1 cut(s) 215
PciSI GCTCTTC 2 cut(s) 229, 367
PdmI GAANNNNTTC 1 cut(s) 113
PfeI GAWTC 1 cut(s) 109
PfoI TCCNGGA 1 cut(s) 375
PkrI GCNGC 4 cut(s) 38, 106, 130, 133
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 1 cut(s) 192
PstI CTGCAG 1 cut(s) 130
PsuI RGATCY 1 cut(s) 174
RsaI GTAC 1 cut(s) 372
RsaNI GTAC 1 cut(s) 371
SapI GCTCTTC 2 cut(s) 229, 367
SatI GCNGC 4 cut(s) 37, 105, 129, 132
Sau3AI GATC 2 cut(s) 9, 174
Sau96I GGNCC 1 cut(s) 192
ScrFI CCNGG 3 cut(s) 96, 169, 377
SetI ASST 8 cut(s) 18, 30, 147, 155, 185, 194, 224, 362
SfaNI GCATC 1 cut(s) 171
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 1 cut(s) 192
Sse9I AATT 1 cut(s) 309
SseBI AGGCCT 1 cut(s) 215
SsiI CCGC 2 cut(s) 36, 132
SspMI CTAG 1 cut(s) 382
StuI AGGCCT 1 cut(s) 215
StyD4I CCNGG 3 cut(s) 94, 167, 375
StyI CCWWGG 3 cut(s) 31, 62, 366
TaaI ACNGT 1 cut(s) 72
TaqI TCGA 1 cut(s) 12
TasI AATT 1 cut(s) 309
TauI GCSGC 2 cut(s) 39, 134
TfiI GAWTC 1 cut(s) 109
TscAI CASTG 1 cut(s) 77
TseI GCWGC 2 cut(s) 104, 128
TspRI CASTG 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 192
XapI RAATTY 1 cut(s) 309
XceI RCATGY 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 373
XmnI GAANNNNTTC 1 cut(s) 113
XspI CTAG 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.