Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000584.1

Orthogroup ID

OG0005052

Physical Location & Seq

Genomic Coordinates Reverse (-)

34697 .. 37527

Gene Structure 2831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000584.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

atgtgggcagcttcgtgccttgcgtcgtgttgtgccggctgtgcttgcaatttgtgccagtcggcggtttctagtattagccgccgctctgcaaggattgcatactgtttcctctttgcgttttctctcattgcttcatggattctccgcgacgtcgcgccgcctctactggaaaagataccttggattaatcattttcatcagatacccgacagggagtggtttgaaaccgaggctgtgcttcgtgttagcttgggaaactttctgttcttcaccatcctgtcagttgtgatgattggtgtgaagagtcaaaaggatccccgtgatagtatccaccatggtggatggatgatgaaagttacttgctggttgcttttggtgatattctcattgtttttcataccaaatgggattattagtttctatgagacaattgcaaagtttggctcaggattctttcttctcgtacaagttgtacttctgttggattttgttcatggatggaacgacaaatgggttggatatgatgagcagttctggtatgttgctctttttgttgtttctctagtttgttatctggcgacattcgtcttctctggacttcttttccacttgttcacgccatctggacatgactgcgggctgaacaccttctttattgtcatgactctgatattcgtctttgtgtttcttatagtggcactgcatcctactgtaagtggcagcattttacccgcgtcagttatatctgtgtactgtacatacctctgctacagtgcacttgctagtgagccgagggactatgagtgcaatggtcttcacaagcattctaaagctgtttccactgggactcttaccttaggtctgcttaccactgttctatctgtggtttattctgctgtgcgtgctggatcttccactactcttctgtccccgcctagttcacctcgtgcaggtgctggaaaaccactgctcccattggataagccagaagaacatgaagaaaatgagaaagccaagtctgtgtcgtattcatatgccttcttccacatcatcttctcacttgcaagtatgtactcggcaatgcttctgacagggtggtcaacctcagttggggagagtgggaagttgattgacgtggggtggccgtccgtctgggtgagggtcatgactagttgggcaactgcaggtctctacatctggtctcttttggctcctattctgttccctgagagggaattttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015194 GO:0015318 GO:0015711 GO:0015804 GO:0015807 GO:0015825 GO:0015849 GO:0022857 GO:0022889 GO:0032329 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098655 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Serinc

Protein Analysis

414

Amino Acids

46.07

Weight (kDa)

6.62

Isoelectric Point (pI)

32.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16180 AT1G16180
fragaria_vesca	FvH4_6g28080 FvH4_6g28080 FvH4_6g28080 FvH4_6g28080 FvH4_6g28080 FvH4_6g28080
malus_domestica	MD09G1229700.v1.1 MD17G1228400.v1.1
prunus_persica	Prupe.3G105800_v2.0.a1 Prupe.3G105800_v2.0.a1 Prupe.3G105800_v2.0.a1
pyrus_communis	pycom09g14820 pycom17g23100
rosa_chinensis	RchiOBHm_Chr2g0131941
rosa_laevigata	RLG00000019219
rosa_multiflora	Rmu_sc0000584.1_g000008 Rmu_sc0003731.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112470
rosa_rugosa	Rorug02G0300800 Rorug02G0300900 Rorug02G0301000 Rorug02G0301100 Rorug02G0301200 Rorug02G0301300
rosa_samantha	Rh2BG360100 Rh2CG338000
rosa_wichuraiana	Rw2G028690 Rw2G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	944
AasI	GACNNNNNNGTC	1 cut(s)	1099
AatII	GACGTC	1 cut(s)	156
Acc36I	ACCTGC	2 cut(s)	944, 1178
AccBSI	CCGCTC	1 cut(s)	87
AccII	CGCG	3 cut(s)	150, 158, 737
AciI	CCGC	8 cut(s)	65, 82, 85, 148, 161, 639, 735, 935
AclWI	GGATC	3 cut(s)	311, 324, 919
AcoI	YGGCCR	1 cut(s)	1145
AcsI	RAATTY	1 cut(s)	1238
AcyI	GRCGYC	1 cut(s)	153
AdeI	CACNNNGTG	1 cut(s)	950
AfaI	GTAC	5 cut(s)	468, 477, 755, 760, 1076
AfiI	CCNNNNNNNGG	4 cut(s)	64, 953, 1113, 1234
AgsI	TTSAA	1 cut(s)	227
AhlI	ACTAGT	1 cut(s)	1172
AjiI	CACGTC	1 cut(s)	1138
AleI	CACNNNNGTG	1 cut(s)	339
AluBI	AGCT	3 cut(s)	11, 252, 836
AluI	AGCT	3 cut(s)	11, 252, 836
Alw21I	GWGCWC	1 cut(s)	781
Alw26I	GTCTC	3 cut(s)	422, 1196, 1209
Alw44I	GTGCAC	1 cut(s)	777
AlwI	GGATC	3 cut(s)	311, 324, 919
AlwNI	CAGNNNCTG	1 cut(s)	959
AoxI	GGCC	1 cut(s)	1145
ApaLI	GTGCAC	1 cut(s)	777
ApeKI	GCWGC	2 cut(s)	8, 723
ApoI	RAATTY	1 cut(s)	1238
AseI	ATTAAT	1 cut(s)	189
Asp700I	GAANNNNTTC	1 cut(s)	650
AspLEI	GCGC	1 cut(s)	160
AsuHPI	GGTGA	4 cut(s)	265, 391, 936, 1171
AxyI	CCTNAGG	1 cut(s)	859
BaeGI	GKGCMC	1 cut(s)	781
BamHI	GGATCC	1 cut(s)	316
BauI	CACGAG	1 cut(s)	948
BbsI	GAAGAC	2 cut(s)	583, 809
Bbv12I	GWGCWC	1 cut(s)	781
BbvI	GCAGC	2 cut(s)	20, 735
BccI	CCATC	4 cut(s)	284, 339, 495, 631
BceAI	ACGGC	1 cut(s)	1132
BciVI	GTATCC	1 cut(s)	341
BcoDI	GTCTC	3 cut(s)	422, 1196, 1209
BcuI	ACTAGT	1 cut(s)	1172
BfaI	CTAG	5 cut(s)	72, 566, 786, 939, 1173
BfmI	CTRYAG	2 cut(s)	772, 1185
BfuAI	ACCTGC	2 cut(s)	944, 1178
BfuI	GTATCC	1 cut(s)	341
BisI	GCNGC	5 cut(s)	9, 82, 85, 161, 724
BlsI	GCNGC	5 cut(s)	10, 83, 86, 162, 725
BmgBI	CACGTC	1 cut(s)	1138
BmiI	GGNNCC	2 cut(s)	318, 1215
BmrI	ACTGGG	1 cut(s)	855
BmsI	GCATC	1 cut(s)	715
BmuI	ACTGGG	1 cut(s)	855
BoxI	GACNNNNGTC	1 cut(s)	587
BpiI	GAAGAC	2 cut(s)	583, 809
Bpu10I	CCTNAGC	1 cut(s)	448
BsaHI	GRCGYC	1 cut(s)	153
BsaI	GGTCTC	2 cut(s)	1196, 1209
BsaJI	CCNNGG	4 cut(s)	182, 231, 337, 794
BsaXI	ACNNNNNCTCC	2 cut(s)	957, 987
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 953, 1113, 1234
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	3 cut(s)	58, 174, 850
Bse21I	CCTNAGG	1 cut(s)	859
Bse3DI	GCAATG	3 cut(s)	129, 817, 1089
BseDI	CCNNGG	4 cut(s)	182, 231, 337, 794
BseGI	GGATG	5 cut(s)	276, 350, 354, 506, 706
BseLI	CCNNNNNNNGG	4 cut(s)	64, 953, 1113, 1234
BseMI	GCAATG	3 cut(s)	129, 817, 1089
BseMII	CTCAG	3 cut(s)	462, 1122, 1221
BseNI	ACTGG	3 cut(s)	58, 174, 850
BseSI	GKGCMC	1 cut(s)	781
BseXI	GCAGC	2 cut(s)	20, 735
BsgI	GTGCAG	1 cut(s)	972
Bsh1236I	CGCG	3 cut(s)	150, 158, 737
BshFI	GGCC	1 cut(s)	1147
BsiHKAI	GWGCWC	1 cut(s)	781
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	3 cut(s)	812, 862, 916
BslI	CCNNNNNNNGG	4 cut(s)	64, 953, 1113, 1234
BsmAI	GTCTC	3 cut(s)	422, 1196, 1209
BsmFI	GGGAC	3 cut(s)	812, 862, 916
BsmI	GAATGC	1 cut(s)	826
BsnI	GGCC	1 cut(s)	1147
Bso31I	GGTCTC	2 cut(s)	1196, 1209
Bsp1286I	GDGCHC	1 cut(s)	781
Bsp1407I	TGTACA	1 cut(s)	758
Bsp143I	GATC	2 cut(s)	316, 911
Bsp19I	CCATGG	1 cut(s)	337
BspACI	CCGC	8 cut(s)	65, 82, 85, 148, 161, 639, 735, 935
BspANI	GGCC	1 cut(s)	1147
BspCNI	CTCAG	3 cut(s)	461, 1121, 1222
BspFNI	CGCG	3 cut(s)	150, 158, 737
BspHI	TCATGA	2 cut(s)	663, 1167
BspLI	GGNNCC	2 cut(s)	318, 1215
BspMAI	CTGCAG	1 cut(s)	1189
BspMI	ACCTGC	2 cut(s)	944, 1178
BspPI	GGATC	3 cut(s)	311, 324, 919
BspTNI	GGTCTC	2 cut(s)	1196, 1209
BsrBI	CCGCTC	1 cut(s)	87
BsrDI	GCAATG	3 cut(s)	129, 817, 1089
BsrFI	RCCGGY	1 cut(s)	35
BsrGI	TGTACA	1 cut(s)	758
BsrI	ACTGG	3 cut(s)	58, 174, 850
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	4 cut(s)	182, 231, 337, 794
BssMI	GATC	2 cut(s)	316, 911
BssNI	GRCGYC	1 cut(s)	153
BssSI	CACGAG	1 cut(s)	948
BssT1I	CCWWGG	2 cut(s)	182, 337
Bst2BI	CACGAG	1 cut(s)	948
Bst4CI	ACNGT	5 cut(s)	107, 715, 758, 776, 877
Bst6I	CTCTTC	2 cut(s)	299, 930
BstACI	GRCGYC	1 cut(s)	153
BstAPI	GCANNNNNTGC	2 cut(s)	54, 98
BstAUI	TGTACA	1 cut(s)	758
BstC8I	GCNNGC	4 cut(s)	37, 46, 641, 906
BstDEI	CTNAG	4 cut(s)	448, 859, 1108, 1230
BstDSI	CCRYGG	1 cut(s)	337
BstENI	CCTNNNNNAGG	1 cut(s)	951
BstF5I	GGATG	5 cut(s)	276, 350, 354, 506, 706
BstFNI	CGCG	3 cut(s)	150, 158, 737
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	2 cut(s)	319, 914
BstMAI	GTCTC	3 cut(s)	422, 1196, 1209
BstMBI	GATC	2 cut(s)	316, 911
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 45, 54, 98, 905
BstPAI	GACNNNNGTC	1 cut(s)	587
BstSFI	CTRYAG	2 cut(s)	772, 1185
BstSLI	GKGCMC	1 cut(s)	781
BstUI	CGCG	3 cut(s)	150, 158, 737
BstV1I	GCAGC	2 cut(s)	20, 735
BstV2I	GAAGAC	2 cut(s)	583, 809
BstX2I	RGATCY	2 cut(s)	316, 911
BstXI	CCANNNNNNTGG	1 cut(s)	341
BstYI	RGATCY	2 cut(s)	316, 911
Bsu36I	CCTNAGG	1 cut(s)	859
BsuI	GTATCC	1 cut(s)	341
BsuRI	GGCC	1 cut(s)	1147
BtgI	CCRYGG	1 cut(s)	337
BtrI	CACGTC	1 cut(s)	1138
BtsCI	GGATG	5 cut(s)	276, 350, 354, 506, 706
BtsI	GCAGTG	2 cut(s)	701, 968
BtsIMutI	CAGTG	5 cut(s)	701, 781, 843, 873, 968
BveI	ACCTGC	2 cut(s)	944, 1178
Cac8I	GCNNGC	4 cut(s)	37, 46, 641, 906
CaiI	CAGNNNCTG	1 cut(s)	959
CciI	TCATGA	2 cut(s)	663, 1167
CfoI	GCGC	1 cut(s)	160
Cfr10I	RCCGGY	1 cut(s)	35
CseI	GACGC	2 cut(s)	12, 726
Csp6I	GTAC	5 cut(s)	467, 476, 754, 759, 1075
CviAII	CATG	7 cut(s)	138, 338, 497, 632, 664, 998, 1168
CviQI	GTAC	5 cut(s)	467, 476, 754, 759, 1075
DdeI	CTNAG	4 cut(s)	448, 859, 1108, 1230
DpnI	GATC	2 cut(s)	318, 913
DpnII	GATC	2 cut(s)	316, 911
DraIII	CACNNNGTG	1 cut(s)	950
DrdI	GACNNNNNNGTC	1 cut(s)	1099
DseDI	GACNNNNNNGTC	1 cut(s)	1099
EaeI	YGGCCR	1 cut(s)	1145
Eam1104I	CTCTTC	2 cut(s)	299, 930
EarI	CTCTTC	2 cut(s)	299, 930
Eco130I	CCWWGG	2 cut(s)	182, 337
Eco31I	GGTCTC	2 cut(s)	1196, 1209
Eco81I	CCTNAGG	1 cut(s)	859
EcoNI	CCTNNNNNAGG	1 cut(s)	951
EcoT14I	CCWWGG	2 cut(s)	182, 337
ErhI	CCWWGG	2 cut(s)	182, 337
FaeI	CATG	7 cut(s)	141, 341, 500, 635, 667, 1001, 1171
FalI	AAGNNNNNCTT	2 cut(s)	462, 494
FaqI	GGGAC	3 cut(s)	812, 862, 916
FatI	CATG	7 cut(s)	137, 337, 496, 631, 663, 997, 1167
FauI	CCCGC	3 cut(s)	632, 742, 942
FauNDI	CATATG	1 cut(s)	1036
Fnu4HI	GCNGC	5 cut(s)	9, 82, 85, 161, 724
FokI	GGATG	5 cut(s)	263, 357, 361, 513, 693
Fsp4HI	GCNGC	5 cut(s)	9, 82, 85, 161, 724
FspBI	CTAG	5 cut(s)	72, 566, 786, 939, 1173
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	5 cut(s)	9, 82, 85, 161, 724
HaeIII	GGCC	1 cut(s)	1147
HapII	CCGG	1 cut(s)	36
HgaI	GACGC	2 cut(s)	12, 726
HhaI	GCGC	1 cut(s)	160
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	7 cut(s)	141, 341, 500, 635, 667, 1001, 1171
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	1104
HindII	GTYRAC	1 cut(s)	1104
HinfI	GANTC	5 cut(s)	142, 307, 453, 667, 850
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	4 cut(s)	265, 391, 936, 1171
Hpy166II	GTNNAC	5 cut(s)	618, 754, 779, 944, 1104
Hpy188I	TCNGA	3 cut(s)	204, 672, 1092
Hpy188III	TCNNGA	5 cut(s)	450, 597, 627, 664, 1168
Hpy8I	GTNNAC	5 cut(s)	618, 754, 779, 944, 1104
Hpy99I	CGWCG	3 cut(s)	28, 155, 158
HpyAV	CCTTC	2 cut(s)	661, 1051
HpyCH4III	ACNGT	5 cut(s)	107, 715, 758, 776, 877
HpyCH4IV	ACGT	2 cut(s)	153, 1137
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 45, 54, 98, 905
HpyF3I	CTNAG	4 cut(s)	448, 859, 1108, 1230
HpySE526I	ACGT	2 cut(s)	153, 1137
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	7 cut(s)	141, 341, 500, 635, 667, 1001, 1171
HspAI	GCGC	1 cut(s)	158
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	316, 911
LmnI	GCTCC	2 cut(s)	978, 1219
Lsp1109I	GCAGC	2 cut(s)	20, 735
LweI	GCATC	1 cut(s)	715
MaeI	CTAG	5 cut(s)	72, 566, 786, 939, 1173
MaeII	ACGT	2 cut(s)	153, 1137
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	2 cut(s)	318, 913
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	2 cut(s)	316, 911
MfeI	CAATTG	1 cut(s)	432
MflI	RGATCY	2 cut(s)	316, 911
MhlI	GDGCHC	1 cut(s)	781
MluCI	AATT	3 cut(s)	49, 432, 1238
MlyI	GAGTC	3 cut(s)	316, 661, 844
MmeI	TCCRAC	2 cut(s)	465, 499
MnlI	CCTC	9 cut(s)	122, 174, 226, 776, 789, 957, 1117, 1155, 1227
MroNI	GCCGGC	1 cut(s)	35
MroXI	GAANNNNTTC	1 cut(s)	650
MseI	TTAA	2 cut(s)	189, 1243
MslI	CAYNNNNRTG	1 cut(s)	339
MspI	CCGG	1 cut(s)	36
MunI	CAATTG	1 cut(s)	432
Mva1269I	GAATGC	1 cut(s)	826
MvnI	CGCG	3 cut(s)	150, 158, 737
MwoI	GCNNNNNNNGC	5 cut(s)	41, 45, 54, 98, 905
NaeI	GCCGGC	1 cut(s)	37
NcoI	CCATGG	1 cut(s)	337
NdeI	CATATG	1 cut(s)	1036
NdeII	GATC	2 cut(s)	316, 911
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	7 cut(s)	141, 341, 500, 635, 667, 1001, 1171
NlaIV	GGNNCC	2 cut(s)	318, 1215
NmeAIII	GCCGAG	2 cut(s)	819, 1058
OliI	CACNNNNGTG	1 cut(s)	339
PagI	TCATGA	2 cut(s)	663, 1167
PaqCI	CACCTGC	1 cut(s)	944
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PctI	GAATGC	1 cut(s)	826
PdiI	GCCGGC	1 cut(s)	37
PdmI	GAANNNNTTC	1 cut(s)	650
PfeI	GAWTC	2 cut(s)	142, 453
PkrI	GCNGC	5 cut(s)	10, 83, 86, 162, 725
PleI	GAGTC	3 cut(s)	315, 661, 844
PpsI	GAGTC	3 cut(s)	315, 661, 844
PshAI	GACNNNNGTC	1 cut(s)	587
PshBI	ATTAAT	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	318, 1215
PstI	CTGCAG	1 cut(s)	1189
PstNI	CAGNNNCTG	1 cut(s)	959
PsuI	RGATCY	2 cut(s)	316, 911
RsaI	GTAC	5 cut(s)	468, 477, 755, 760, 1076
RsaNI	GTAC	5 cut(s)	467, 476, 754, 759, 1075
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	2 cut(s)	189, 1243
SatI	GCNGC	5 cut(s)	9, 82, 85, 161, 724
Sau3AI	GATC	2 cut(s)	316, 911
SchI	GAGTC	3 cut(s)	316, 661, 844
SduI	GDGCHC	1 cut(s)	781
SfaNI	GCATC	1 cut(s)	715
SfcI	CTRYAG	2 cut(s)	772, 1185
SmiMI	CAYNNNNRTG	1 cut(s)	339
SpeI	ACTAGT	1 cut(s)	1172
Sse9I	AATT	3 cut(s)	49, 432, 1238
SsiI	CCGC	8 cut(s)	65, 82, 85, 148, 161, 639, 735, 935
SspMI	CTAG	5 cut(s)	72, 566, 786, 939, 1173
StyI	CCWWGG	2 cut(s)	182, 337
TaaI	ACNGT	5 cut(s)	107, 715, 758, 776, 877
TaiI	ACGT	2 cut(s)	156, 1140
TasI	AATT	3 cut(s)	49, 432, 1238
TatI	WGTACW	4 cut(s)	475, 753, 758, 1074
TauI	GCSGC	3 cut(s)	84, 87, 163
TfiI	GAWTC	2 cut(s)	142, 453
Tru1I	TTAA	2 cut(s)	189, 1243
Tru9I	TTAA	2 cut(s)	189, 1243
TscAI	CASTG	5 cut(s)	708, 781, 850, 880, 975
TseI	GCWGC	2 cut(s)	8, 723
TspDTI	ATGAA	7 cut(s)	126, 188, 368, 388, 485, 1014, 1023
TspGWI	ACGGA	1 cut(s)	1141
TspRI	CASTG	5 cut(s)	708, 781, 850, 880, 975
VneI	GTGCAC	1 cut(s)	777
VspI	ATTAAT	1 cut(s)	189
XagI	CCTNNNNNAGG	1 cut(s)	951
XapI	RAATTY	1 cut(s)	1238
XmnI	GAANNNNTTC	1 cut(s)	650
XspI	CTAG	5 cut(s)	72, 566, 786, 939, 1173
ZraI	GACGTC	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.