MD17G1228400.v1.1

Serine incorporator

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
27599713 .. 27603420
3708 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1228400.v1.1.491

Sequence Viewer

Length: 1242 bp
ATGTGGGCAGCTTCTTGCCTGGCATCATGCTGCGCTGCTTGCGCTTGCGATGCTTGCCGGACAGTGGTGTCAAGTATTAGCCGCCGGTCTGCTAGGATTGCTTACTGTGGGCTCTTTGCGCTTTCTTTGATAGTCTCATGGATTCTCCGTGAGGTTGCGGCTCCTCTCCTTGAAAAGATTCCTTGGATTAATCAGTTTAATGAGACACATAACAGGGAGTGGTTTGAAACAGATGCAGTGCTTCGTGTTAGCTTGGGAAATTTTCTCTTCTTCACTATTTTATCAGTTATGATGGTTGGTGTGAAGAATCAGAAGGATCCCCGTGATAGTTTGCATCATGGTGGATGGATGATGAAAGTTATATGCTGGTGTCTCTTAGTGATCTTCATGTTTTTTGTACCCAATGAGATTGTTAGCTTCTATGAAACAATTTCAAAGTTTGGCTCAGGATTTTTTCTTCTTGTACAAGTTGTACTTCTGTTGGATTTTGTTCATGGATGGAATGACAAATGGGTTGGATATGATGAGAAGTTCTGGTACGTTGCACTTTTTGTTGTTTCTCTTGTTTGTTATCTGGCAACATTCGTCTTCTCTGGACTTCTTTTCCATTGGTTCACACCATCTGGACAAGACTGTGGGCTCAACACCTTCTTTATTGTCATGACTCTCATGTGTGTCTTCGTGTTTCTTATAGTGGCACTGCATCCTGCTGTAAGCGGCAGCATTTTGCCAGCATCAGTTATATCTATGTACTGCACATACCTCTGCTACAGTGCACTTGCTAGTGAACCTAGGGACTATGAGTGCAATGGTCTTCACAAGCACTCCAAAGCTGTTTCCACTGGGACACTTACCTTCGGTTTGCTAACCACTGTTCTTTCCGTGGTGTATTCTGCTGTTCGTGCTGGATCCTCCACGACACTTCTCTCCCCACCAGGTTCTCCCCGCGCAGGCGCTGGAAAGCCTCTGCTTCCATTAGACAAGGTTGATGAACACGAAGAAAAAGAGAAGTCCAAGCCAGTGTCATATTCGTATTCGTTTTTCCACATAATCTTCTCTCTTGCTAGTATGTACTCGGCCATGCTTCTGACAGGGTGGTCAACCTCTGTTGGGGAGAGTGGGAAGTTGGTGGACGTTGGGTGGCCATCTGTGTGGGTGAGGATGGTGACTAGTTGGGCAACTGCAGGTCTCTACATCTGGTCTCTTTTGGCTCCTATTCTGTTCCCCGAGAGGGAATTCTGA

Protein Analysis

414

Amino Acids

46.09

Weight (kDa)

6.78

Isoelectric Point (pI)

33.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serinc PF03348 8 - 411 1e-121 Serine incorporator (Serinc)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 67, 1096
Acc36I ACCTGC 1 cut(s) 1175
AccII CGCG 1 cut(s) 948
AciI CCGC 4 cut(s) 82, 158, 717, 946
AclWI GGATC 4 cut(s) 311, 324, 903, 916
AcoI YGGCCR 2 cut(s) 1077, 1142
AcsI RAATTY 2 cut(s) 259, 1235
AfaI GTAC 6 cut(s) 399, 465, 474, 539, 752, 1073
AfiI CCNNNNNNNGG 4 cut(s) 64, 950, 1110, 1231
AgsI TTSAA 3 cut(s) 173, 227, 435
AhlI ACTAGT 1 cut(s) 1169
AjnI CCWGG 2 cut(s) 18, 934
AluBI AGCT 4 cut(s) 11, 252, 417, 833
AluI AGCT 4 cut(s) 11, 252, 417, 833
Alw21I GWGCWC 1 cut(s) 778
Alw26I GTCTC 5 cut(s) 139, 197, 377, 1193, 1206
Alw44I GTGCAC 1 cut(s) 774
AlwI GGATC 4 cut(s) 311, 324, 903, 916
AlwNI CAGNNNCTG 1 cut(s) 956
Ama87I CYCGRG 1 cut(s) 1226
AoxI GGCC 2 cut(s) 1077, 1142
ApaLI GTGCAC 1 cut(s) 774
ApeKI GCWGC 4 cut(s) 8, 30, 35, 720
ApoI RAATTY 2 cut(s) 259, 1235
AseI ATTAAT 1 cut(s) 189
Asp700I GAANNNNTTC 1 cut(s) 177
AspA2I CCTAGG 1 cut(s) 791
AspLEI GCGC 5 cut(s) 35, 44, 121, 950, 956
AsuHPI GGTGA 2 cut(s) 1168, 1177
AvaI CYCGRG 1 cut(s) 1226
AvrII CCTAGG 1 cut(s) 791
BaeGI GKGCMC 1 cut(s) 778
BalI TGGCCA 1 cut(s) 1144
BamHI GGATCC 2 cut(s) 316, 908
BanII GRGCYC 2 cut(s) 114, 642
BarI GAAGNNNNNNTAC 2 cut(s) 521, 553
BbsI GAAGAC 3 cut(s) 580, 670, 806
Bbv12I GWGCWC 1 cut(s) 778
BbvI GCAGC 4 cut(s) 17, 20, 22, 732
BccI CCATC 6 cut(s) 286, 339, 492, 628, 1153, 1156
BciT130I CCWGG 2 cut(s) 20, 936
BcoDI GTCTC 5 cut(s) 139, 197, 377, 1193, 1206
BcuI ACTAGT 1 cut(s) 1169
BfaI CTAG 5 cut(s) 93, 783, 792, 1065, 1170
BfmI CTRYAG 2 cut(s) 769, 1182
BfoI RGCGCY 1 cut(s) 957
BfuAI ACCTGC 1 cut(s) 1175
BisI GCNGC 7 cut(s) 9, 31, 36, 82, 159, 718, 721
BlnI CCTAGG 1 cut(s) 791
BlsI GCNGC 7 cut(s) 10, 32, 37, 83, 160, 719, 722
Bme1390I CCNGG 2 cut(s) 20, 936
BmeT110I CYCGRG 1 cut(s) 1226
BmiI GGNNCC 4 cut(s) 162, 318, 910, 1212
BmrFI CCNGG 2 cut(s) 20, 936
BmrI ACTGGG 1 cut(s) 852
BmsI GCATC 6 cut(s) 32, 40, 223, 343, 712, 743
BmuI ACTGGG 1 cut(s) 852
BpiI GAAGAC 3 cut(s) 580, 670, 806
Bpu10I CCTNAGC 1 cut(s) 445
BsaI GGTCTC 2 cut(s) 1193, 1206
BsaJI CCNNGG 3 cut(s) 182, 791, 882
BsaXI ACNNNNNCTCC 2 cut(s) 809, 839
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 950, 1110, 1231
Bse118I RCCGGY 1 cut(s) 84
Bse1I ACTGG 2 cut(s) 847, 1019
Bse3DI GCAATG 1 cut(s) 814
BseBI CCWGG 2 cut(s) 20, 936
BseDI CCNNGG 3 cut(s) 182, 791, 882
BseGI GGATG 5 cut(s) 350, 354, 503, 703, 1167
BseLI CCNNNNNNNGG 4 cut(s) 64, 950, 1110, 1231
BseMI GCAATG 1 cut(s) 814
BseMII CTCAG 1 cut(s) 459
BseNI ACTGG 2 cut(s) 847, 1019
BseRI GAGGAG 1 cut(s) 153
BseSI GKGCMC 1 cut(s) 778
BseXI GCAGC 4 cut(s) 17, 20, 22, 732
BsgI GTGCAG 1 cut(s) 739
Bsh1236I CGCG 1 cut(s) 948
BshFI GGCC 2 cut(s) 1079, 1144
BsiHKAI GWGCWC 1 cut(s) 778
BsiHKCI CYCGRG 1 cut(s) 1226
BsiSI CCGG 2 cut(s) 58, 85
BslFI GGGAC 2 cut(s) 809, 859
BslI CCNNNNNNNGG 4 cut(s) 64, 950, 1110, 1231
BsmAI GTCTC 5 cut(s) 139, 197, 377, 1193, 1206
BsmFI GGGAC 2 cut(s) 809, 859
BsnI GGCC 2 cut(s) 1079, 1144
Bso31I GGTCTC 2 cut(s) 1193, 1206
BsoBI CYCGRG 1 cut(s) 1226
Bsp1286I GDGCHC 3 cut(s) 114, 642, 778
Bsp1407I TGTACA 1 cut(s) 463
Bsp143I GATC 3 cut(s) 316, 381, 908
BspACI CCGC 4 cut(s) 82, 158, 717, 946
BspANI GGCC 2 cut(s) 1079, 1144
BspCNI CTCAG 1 cut(s) 458
BspFNI CGCG 1 cut(s) 948
BspHI TCATGA 1 cut(s) 660
BspLI GGNNCC 4 cut(s) 162, 318, 910, 1212
BspMAI CTGCAG 1 cut(s) 1186
BspMI ACCTGC 1 cut(s) 1175
BspPI GGATC 4 cut(s) 311, 324, 903, 916
BspTNI GGTCTC 2 cut(s) 1193, 1206
BsrDI GCAATG 1 cut(s) 814
BsrFI RCCGGY 1 cut(s) 84
BsrGI TGTACA 1 cut(s) 463
BsrI ACTGG 2 cut(s) 847, 1019
BssAI RCCGGY 1 cut(s) 84
BssECI CCNNGG 3 cut(s) 182, 791, 882
BssMI GATC 3 cut(s) 316, 381, 908
BssT1I CCWWGG 2 cut(s) 182, 791
Bst2UI CCWGG 2 cut(s) 20, 936
Bst4CI ACNGT 5 cut(s) 64, 107, 635, 773, 874
Bst6I CTCTTC 1 cut(s) 272
BstAUI TGTACA 1 cut(s) 463
BstC8I GCNNGC 5 cut(s) 40, 46, 55, 732, 952
BstDEI CTNAG 2 cut(s) 376, 445
BstDSI CCRYGG 1 cut(s) 882
BstF5I GGATG 5 cut(s) 350, 354, 503, 703, 1167
BstFNI CGCG 1 cut(s) 948
BstH2I RGCGCY 1 cut(s) 957
BstHHI GCGC 5 cut(s) 35, 44, 121, 950, 956
BstKTI GATC 3 cut(s) 319, 384, 911
BstMAI GTCTC 5 cut(s) 139, 197, 377, 1193, 1206
BstMBI GATC 3 cut(s) 316, 381, 908
BstMWI GCNNNNNNNGC 7 cut(s) 39, 41, 50, 54, 98, 118, 902
BstNI CCWGG 2 cut(s) 20, 936
BstSCI CCNGG 2 cut(s) 18, 934
BstSFI CTRYAG 2 cut(s) 769, 1182
BstSLI GKGCMC 1 cut(s) 778
BstUI CGCG 1 cut(s) 948
BstV1I GCAGC 4 cut(s) 17, 20, 22, 732
BstV2I GAAGAC 3 cut(s) 580, 670, 806
BstX2I RGATCY 2 cut(s) 316, 908
BstXI CCANNNNNNTGG 1 cut(s) 1152
BstYI RGATCY 2 cut(s) 316, 908
BsuRI GGCC 2 cut(s) 1079, 1144
BtgI CCRYGG 1 cut(s) 882
BtgZI GCGATG 1 cut(s) 63
BtsCI GGATG 5 cut(s) 350, 354, 503, 703, 1167
BtsI GCAGTG 2 cut(s) 243, 698
BtsIMutI CAGTG 7 cut(s) 69, 243, 698, 778, 840, 870, 1026
BveI ACCTGC 1 cut(s) 1175
Cac8I GCNNGC 5 cut(s) 40, 46, 55, 732, 952
CaiI CAGNNNCTG 1 cut(s) 956
CciI TCATGA 1 cut(s) 660
CfoI GCGC 5 cut(s) 35, 44, 121, 950, 956
Cfr10I RCCGGY 1 cut(s) 84
CsiI ACCWGGT 1 cut(s) 934
Csp6I GTAC 6 cut(s) 398, 464, 473, 538, 751, 1072
CviAII CATG 8 cut(s) 27, 138, 338, 388, 494, 661, 670, 1081
CviQI GTAC 6 cut(s) 398, 464, 473, 538, 751, 1072
DdeI CTNAG 2 cut(s) 376, 445
DpnI GATC 3 cut(s) 318, 383, 910
DpnII GATC 3 cut(s) 316, 381, 908
DrdI GACNNNNNNGTC 2 cut(s) 67, 1096
DseDI GACNNNNNNGTC 2 cut(s) 67, 1096
EaeI YGGCCR 2 cut(s) 1077, 1142
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Eco130I CCWWGG 2 cut(s) 182, 791
Eco24I GRGCYC 2 cut(s) 114, 642
Eco31I GGTCTC 2 cut(s) 1193, 1206
Eco88I CYCGRG 1 cut(s) 1226
EcoRI GAATTC 1 cut(s) 1235
EcoRII CCWGG 2 cut(s) 18, 934
EcoT14I CCWWGG 2 cut(s) 182, 791
EcoT38I GRGCYC 2 cut(s) 114, 642
ErhI CCWWGG 2 cut(s) 182, 791
FaeI CATG 8 cut(s) 30, 141, 341, 391, 497, 664, 673, 1084
FalI AAGNNNNNCTT 2 cut(s) 459, 491
FaqI GGGAC 2 cut(s) 809, 859
FatI CATG 8 cut(s) 26, 137, 337, 387, 493, 660, 669, 1080
FauI CCCGC 1 cut(s) 953
Fnu4HI GCNGC 7 cut(s) 9, 31, 36, 82, 159, 718, 721
FokI GGATG 5 cut(s) 357, 361, 510, 690, 1174
FriOI GRGCYC 2 cut(s) 114, 642
Fsp4HI GCNGC 7 cut(s) 9, 31, 36, 82, 159, 718, 721
FspBI CTAG 5 cut(s) 93, 783, 792, 1065, 1170
GlaI GCGC 5 cut(s) 34, 43, 120, 949, 955
GluI GCNGC 7 cut(s) 9, 31, 36, 82, 159, 718, 721
HaeII RGCGCY 1 cut(s) 957
HaeIII GGCC 2 cut(s) 1079, 1144
HapII CCGG 2 cut(s) 58, 85
HhaI GCGC 5 cut(s) 35, 44, 121, 950, 956
Hin1II CATG 8 cut(s) 30, 141, 341, 391, 497, 664, 673, 1084
Hin6I GCGC 5 cut(s) 33, 42, 119, 948, 954
HinP1I GCGC 5 cut(s) 33, 42, 119, 948, 954
HincII GTYRAC 1 cut(s) 1101
HindII GTYRAC 1 cut(s) 1101
HinfI GANTC 4 cut(s) 142, 178, 307, 664
HpaII CCGG 2 cut(s) 58, 85
HphI GGTGA 2 cut(s) 1168, 1177
Hpy166II GTNNAC 5 cut(s) 615, 776, 788, 1101, 1132
Hpy188I TCNGA 3 cut(s) 312, 1089, 1241
Hpy188III TCNNGA 4 cut(s) 447, 594, 624, 661
Hpy8I GTNNAC 5 cut(s) 615, 776, 788, 1101, 1132
HpyAV CCTTC 3 cut(s) 307, 658, 865
HpyCH4III ACNGT 5 cut(s) 64, 107, 635, 773, 874
HpyCH4IV ACGT 2 cut(s) 540, 1134
HpyCH4V TGCA 8 cut(s) 236, 334, 545, 703, 756, 776, 807, 1184
HpyF10VI GCNNNNNNNGC 7 cut(s) 39, 41, 50, 54, 98, 118, 902
HpyF3I CTNAG 2 cut(s) 376, 445
HpySE526I ACGT 2 cut(s) 540, 1134
Hsp92II CATG 8 cut(s) 30, 141, 341, 391, 497, 664, 673, 1084
HspAI GCGC 5 cut(s) 33, 42, 119, 948, 954
Kzo9I GATC 3 cut(s) 316, 381, 908
LmnI GCTCC 2 cut(s) 166, 1216
Lsp1109I GCAGC 4 cut(s) 17, 20, 22, 732
LweI GCATC 6 cut(s) 32, 40, 223, 343, 712, 743
MabI ACCWGGT 1 cut(s) 934
MaeI CTAG 5 cut(s) 93, 783, 792, 1065, 1170
MaeII ACGT 2 cut(s) 540, 1134
MaeIII GTNAC 1 cut(s) 1165
MalI GATC 3 cut(s) 318, 383, 910
MboI GATC 3 cut(s) 316, 381, 908
MflI RGATCY 2 cut(s) 316, 908
MhlI GDGCHC 3 cut(s) 114, 642, 778
MlsI TGGCCA 1 cut(s) 1144
MluCI AATT 3 cut(s) 259, 429, 1235
MluNI TGGCCA 1 cut(s) 1144
MlyI GAGTC 1 cut(s) 658
MmeI TCCRAC 2 cut(s) 462, 496
MnlI CCTC 8 cut(s) 145, 174, 773, 922, 975, 1114, 1152, 1224
Mox20I TGGCCA 1 cut(s) 1144
MroXI GAANNNNTTC 1 cut(s) 177
MscI TGGCCA 1 cut(s) 1144
MseI TTAA 2 cut(s) 189, 198
MslI CAYNNNNRTG 2 cut(s) 339, 1150
Msp20I TGGCCA 1 cut(s) 1144
MspI CCGG 2 cut(s) 58, 85
MspR9I CCNGG 2 cut(s) 20, 936
MvaI CCWGG 2 cut(s) 20, 936
MvnI CGCG 1 cut(s) 948
MwoI GCNNNNNNNGC 7 cut(s) 39, 41, 50, 54, 98, 118, 902
NdeII GATC 3 cut(s) 316, 381, 908
NlaIII CATG 8 cut(s) 30, 141, 341, 391, 497, 664, 673, 1084
NlaIV GGNNCC 4 cut(s) 162, 318, 910, 1212
NmeAIII GCCGAG 1 cut(s) 1055
NmuCI GTSAC 1 cut(s) 1165
PagI TCATGA 1 cut(s) 660
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 3 cut(s) 142, 178, 307
PkrI GCNGC 7 cut(s) 10, 32, 37, 83, 160, 719, 722
PleI GAGTC 1 cut(s) 658
PpsI GAGTC 1 cut(s) 658
PshBI ATTAAT 1 cut(s) 189
Psp6I CCWGG 2 cut(s) 18, 934
PspGI CCWGG 2 cut(s) 18, 934
PspN4I GGNNCC 4 cut(s) 162, 318, 910, 1212
PstI CTGCAG 1 cut(s) 1186
PstNI CAGNNNCTG 1 cut(s) 956
PsuI RGATCY 2 cut(s) 316, 908
RsaI GTAC 6 cut(s) 399, 465, 474, 539, 752, 1073
RsaNI GTAC 6 cut(s) 398, 464, 473, 538, 751, 1072
RseI CAYNNNNRTG 2 cut(s) 339, 1150
SaqAI TTAA 2 cut(s) 189, 198
SatI GCNGC 7 cut(s) 9, 31, 36, 82, 159, 718, 721
Sau3AI GATC 3 cut(s) 316, 381, 908
SchI GAGTC 1 cut(s) 658
ScrFI CCNGG 2 cut(s) 20, 936
SduI GDGCHC 3 cut(s) 114, 642, 778
SexAI ACCWGGT 1 cut(s) 934
SfaNI GCATC 6 cut(s) 32, 40, 223, 343, 712, 743
SfcI CTRYAG 2 cut(s) 769, 1182
SmiMI CAYNNNNRTG 2 cut(s) 339, 1150
SpeI ACTAGT 1 cut(s) 1169
Sse9I AATT 3 cut(s) 259, 429, 1235
SsiI CCGC 4 cut(s) 82, 158, 717, 946
SspMI CTAG 5 cut(s) 93, 783, 792, 1065, 1170
StyD4I CCNGG 2 cut(s) 18, 934
StyI CCWWGG 2 cut(s) 182, 791
TaaI ACNGT 5 cut(s) 64, 107, 635, 773, 874
TaiI ACGT 2 cut(s) 543, 1137
TasI AATT 3 cut(s) 259, 429, 1235
TatI WGTACW 4 cut(s) 463, 472, 750, 1071
TauI GCSGC 3 cut(s) 84, 161, 720
TfiI GAWTC 3 cut(s) 142, 178, 307
Tru1I TTAA 2 cut(s) 189, 198
Tru9I TTAA 2 cut(s) 189, 198
TscAI CASTG 7 cut(s) 69, 243, 705, 778, 847, 877, 1026
TseFI GTSAC 1 cut(s) 1165
TseI GCWGC 4 cut(s) 8, 30, 35, 720
Tsp45I GTSAC 1 cut(s) 1165
TspDTI ATGAA 5 cut(s) 368, 376, 438, 482, 1005
TspGWI ACGGA 2 cut(s) 137, 871
TspRI CASTG 7 cut(s) 69, 243, 705, 778, 847, 877, 1026
VneI GTGCAC 1 cut(s) 774
VspI ATTAAT 1 cut(s) 189
XapI RAATTY 2 cut(s) 259, 1235
XmaJI CCTAGG 1 cut(s) 791
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 5 cut(s) 93, 783, 792, 1065, 1170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.