Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005973

Physical Location & Seq

Genomic Coordinates Forward (+)

5578265 .. 5580730

Gene Structure 2466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G16310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGCCGCTTAACTCCTATATTTTCTTTCTCTTTCTCACAACTTCCCCTAGAAACACTTTTTTCGGAATTCGAACGCACAGCGATCGGATAATGGCGACGGAGCATATAACTCGTACGGGAGATGAATACAATGTCGAGCTTTTACCTAGTGACGACGATGCGCCGCCGCTTGAATCGTCTTGGCGTCTCAACCTCGACGCTTTTCAACTCCCTTCTTCCACCGGTGGCCGTCACGACGGACGTACTCGCTTTTCTCGCTATTTTCGTACTCCAAGAAAGGAACGTAGAGTCTCTGAATACTACAAGAAGCAAGAGAGGCTCCTCGAGGGTTTCAATGAGATGGAGACTATCCACGAAAATGGTTTTGCATCTGGTGTTCCAACTGAGGAAGAAATGAAGAAGCTTGCAAAGAGTGAGAGACTTGCGGTTCACATATCGAACGCAACAAATTTGGTGCTTTTTGTAGCAAAAGTTTATGCCTCTATGGAGAGTAGATCCATGGCTGTGATTGCTTCAACTTTGGACTCTCTTTTGGATCTCTTGTCTGGTTTTATCCTCTGGTTTACAGCTAATGCCATGAGAAAACCAAACCAGTTTCACTATCCTATCGGAAAGCGCCGGATGCAACCTGTGGGTATCATTGTGTTTGCTTCCGTGATGGCAACTCTTGGACTGCAAGTTTTGCTAGAGTCAGGAAGGCAACTAGTTGCCAAGAGTGGTATTCATATGAATAGCACAGAGGAGAAATGGATGATTGGTATCATGGTCTCTGTCACCATCGTGAAGTTTCTTCTAATGCTTTATTGCAGAGGATTTCAGAACGAAATCGTTAGGGCCTATGCTCAAGATCACCTCTTTGACGTCGTCACTAATTCAATCGGCTTAGCAACAGCTGTCTTGGCCGTCAAATTCTACTGGTGGATTGATCCTACCGGTGCTATACTTATTGCTTTGTACACCATAGCAACATGGGCAAGAACCGTACTAGAGAACGTCCATTCACTGATCGGCCGCTCTGCGCCACCAGATTTCTTGGCGAAACTGACATTCTTGATATGGAACCATCACGAACAAATTAAGCATATTGACACAGTAAGGGCTTACACTTTTGGGTCACACTACTTTGTGGAAGTGGACATTGTTTTGCCAGAGGACATGAGACTACAAGAGGCTCACAACATCGGAGAGACTCTTCAGGAAAAGCTCGAGCAGCTCGCTGAAGTAGAACGAGCTTTTGTCCACATAGACTTTGAGTTCACTCATCGTCCTGAACACAAGTGTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux ZT_dimer

Protein Analysis

428

Amino Acids

49.11

Weight (kDa)

6.5

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	31 - 223	2.2e-30	Cation efflux transmembrane domain
ZT_dimer	PF16916	239 - 303	4.9e-10	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16310 AT1G16310 AT1G79520 AT1G79520 AT1G79520 AT1G79520
fragaria_vesca	FvH4_3g14550 FvH4_3g14550 FvH4_3g14550 FvH4_3g14550 FvH4_3g14550
malus_domestica	MD05G1235400.v1.1 MD10G1211700.v1.1 MD10G1211900.v1.1
prunus_persica	Prupe.4G131000_v2.0.a1 Prupe.4G131000_v2.0.a1
pyrus_communis	pycom05g21230
rosa_chinensis	RchiOBHm_Chr5g0023931
rosa_laevigata	RLG00000032750
rosa_multiflora	Rmu_sc0004175.1_g000012 Rmu_sc0005837.1_g000003
rosa_roxburghii	Rroxscaffold_1G00055290
rosa_rugosa	Rorug05G0080400
rosa_samantha	Rh5AG170800 Rh5BG167800 Rh5CG183300
rosa_wichuraiana	Rw5G015440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	864
AbsI	CCTCGAGG	1 cut(s)	323
AccBSI	CCGCTC	1 cut(s)	1014
AciI	CCGC	5 cut(s)	5, 164, 167, 425, 1012
AclWI	GGATC	3 cut(s)	489, 543, 920
AcoI	YGGCCR	3 cut(s)	226, 900, 1009
AcsI	RAATTY	3 cut(s)	66, 448, 908
AcuI	CTGAAG	2 cut(s)	1178, 1239
AcyI	GRCGYC	2 cut(s)	184, 861
AfaI	GTAC	5 cut(s)	115, 244, 268, 956, 984
AgeI	ACCGGT	2 cut(s)	221, 932
AgsI	TTSAA	5 cut(s)	173, 206, 334, 516, 876
AhlI	ACTAGT	1 cut(s)	703
AleI	CACNNNNGTG	1 cut(s)	779
AluBI	AGCT	7 cut(s)	139, 403, 569, 893, 1204, 1213, 1232
AluI	AGCT	7 cut(s)	139, 403, 569, 893, 1204, 1213, 1232
Alw26I	GTCTC	7 cut(s)	191, 295, 338, 412, 772, 1153, 1181
AlwI	GGATC	3 cut(s)	489, 543, 920
Ama87I	CYCGRG	2 cut(s)	323, 1205
AoxI	GGCC	4 cut(s)	226, 834, 900, 1009
ApeKI	GCWGC	1 cut(s)	1210
ApoI	RAATTY	3 cut(s)	66, 448, 908
AsiGI	ACCGGT	2 cut(s)	221, 932
AspLEI	GCGC	3 cut(s)	163, 618, 1021
AspS9I	GGNCC	1 cut(s)	834
AsuHPI	GGTGA	2 cut(s)	766, 842
AsuII	TTCGAA	1 cut(s)	70
AvaI	CYCGRG	2 cut(s)	323, 1205
BbvI	GCAGC	1 cut(s)	1222
BccI	CCATC	4 cut(s)	334, 652, 785, 1071
BceAI	ACGGC	2 cut(s)	213, 887
BcgI	CGANNNNNNTGC	4 cut(s)	65, 92, 99, 126
BcoDI	GTCTC	7 cut(s)	191, 295, 338, 412, 772, 1153, 1181
BcuI	ACTAGT	1 cut(s)	703
BfaI	CTAG	6 cut(s)	48, 147, 686, 704, 986, 1285
BfoI	RGCGCY	1 cut(s)	619
BisI	GCNGC	5 cut(s)	5, 164, 167, 1012, 1211
BlpI	GCTNAGC	1 cut(s)	883
BlsI	GCNGC	5 cut(s)	6, 165, 168, 1013, 1212
BmeT110I	CYCGRG	2 cut(s)	323, 1205
BmgT120I	GGNCC	1 cut(s)	834
BmiI	GGNNCC	2 cut(s)	320, 1061
BmsI	GCATC	3 cut(s)	148, 377, 612
Bpu1102I	GCTNAGC	1 cut(s)	883
Bpu14I	TTCGAA	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	828
BsaBI	GATNNNNATC	1 cut(s)	758
BsaHI	GRCGYC	2 cut(s)	184, 861
BsaI	GGTCTC	1 cut(s)	772
BsaJI	CCNNGG	1 cut(s)	498
BsaWI	WCCGGW	2 cut(s)	221, 932
Bse118I	RCCGGY	2 cut(s)	221, 932
Bse1I	ACTGG	2 cut(s)	592, 920
Bse8I	GATNNNNATC	1 cut(s)	758
BseDI	CCNNGG	1 cut(s)	498
BseGI	GGATG	2 cut(s)	627, 756
BseJI	GATNNNNATC	1 cut(s)	758
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	2 cut(s)	592, 920
BseRI	GAGGAG	2 cut(s)	311, 755
BseX3I	CGGCCG	1 cut(s)	1009
BseXI	GCAGC	1 cut(s)	1222
Bsh1285I	CGRYCG	2 cut(s)	85, 1012
BshFI	GGCC	4 cut(s)	228, 836, 902, 1011
BshTI	ACCGGT	2 cut(s)	221, 932
BsiEI	CGRYCG	2 cut(s)	85, 1012
BsiHKCI	CYCGRG	2 cut(s)	323, 1205
BsiSI	CCGG	3 cut(s)	222, 619, 933
BsiWI	CGTACG	1 cut(s)	113
BsmAI	GTCTC	7 cut(s)	191, 295, 338, 412, 772, 1153, 1181
BsmBI	CGTCTC	1 cut(s)	191
BsnI	GGCC	4 cut(s)	228, 836, 902, 1011
Bso31I	GGTCTC	1 cut(s)	772
BsoBI	CYCGRG	2 cut(s)	323, 1205
Bsp119I	TTCGAA	1 cut(s)	70
Bsp1407I	TGTACA	1 cut(s)	954
Bsp143I	GATC	6 cut(s)	82, 494, 535, 847, 925, 1005
Bsp1720I	GCTNAGC	1 cut(s)	883
Bsp19I	CCATGG	1 cut(s)	498
BspACI	CCGC	5 cut(s)	5, 164, 167, 425, 1012
BspANI	GGCC	4 cut(s)	228, 836, 902, 1011
BspCNI	CTCAG	1 cut(s)	376
BspLI	GGNNCC	2 cut(s)	320, 1061
BspPI	GGATC	3 cut(s)	489, 543, 920
BspT104I	TTCGAA	1 cut(s)	70
BspTNI	GGTCTC	1 cut(s)	772
BsrBI	CCGCTC	1 cut(s)	1014
BsrFI	RCCGGY	2 cut(s)	221, 932
BsrGI	TGTACA	1 cut(s)	954
BsrI	ACTGG	2 cut(s)	592, 920
BssAI	RCCGGY	2 cut(s)	221, 932
BssECI	CCNNGG	1 cut(s)	498
BssMI	GATC	6 cut(s)	82, 494, 535, 847, 925, 1005
BssNI	GRCGYC	2 cut(s)	184, 861
BssT1I	CCWWGG	1 cut(s)	498
Bst4CI	ACNGT	2 cut(s)	982, 1093
Bst6I	CTCTTC	1 cut(s)	1197
BstACI	GRCGYC	2 cut(s)	184, 861
BstAPI	GCANNNNNTGC	1 cut(s)	682
BstAUI	TGTACA	1 cut(s)	954
BstBI	TTCGAA	1 cut(s)	70
BstC8I	GCNNGC	2 cut(s)	405, 1215
BstDEI	CTNAG	2 cut(s)	384, 883
BstDSI	CCRYGG	1 cut(s)	498
BstF5I	GGATG	2 cut(s)	627, 756
BstH2I	RGCGCY	1 cut(s)	619
BstHHI	GCGC	3 cut(s)	163, 618, 1021
BstKTI	GATC	6 cut(s)	85, 497, 538, 850, 928, 1008
BstMAI	GTCTC	7 cut(s)	191, 295, 338, 412, 772, 1153, 1181
BstMBI	GATC	6 cut(s)	82, 494, 535, 847, 925, 1005
BstMCI	CGRYCG	2 cut(s)	85, 1012
BstMWI	GCNNNNNNNGC	8 cut(s)	255, 316, 509, 622, 682, 899, 971, 1210
BstV1I	GCAGC	1 cut(s)	1222
BstX2I	RGATCY	2 cut(s)	494, 535
BstXI	CCANNNNNNTGG	1 cut(s)	359
BstYI	RGATCY	2 cut(s)	494, 535
BstZI	CGGCCG	1 cut(s)	1009
BsuRI	GGCC	4 cut(s)	228, 836, 902, 1011
BtgI	CCRYGG	1 cut(s)	498
BtsCI	GGATG	2 cut(s)	627, 756
BtsIMutI	CAGTG	1 cut(s)	1001
Cac8I	GCNNGC	2 cut(s)	405, 1215
CfoI	GCGC	3 cut(s)	163, 618, 1021
Cfr10I	RCCGGY	2 cut(s)	221, 932
Cfr13I	GGNCC	1 cut(s)	834
CseI	GACGC	2 cut(s)	173, 206
Csp6I	GTAC	5 cut(s)	114, 243, 267, 955, 983
CspAI	ACCGGT	2 cut(s)	221, 932
CviAII	CATG	5 cut(s)	499, 577, 763, 969, 1156
CviQI	GTAC	5 cut(s)	114, 243, 267, 955, 983
DdeI	CTNAG	2 cut(s)	384, 883
DpnI	GATC	6 cut(s)	84, 496, 537, 849, 927, 1007
DpnII	GATC	6 cut(s)	82, 494, 535, 847, 925, 1005
EaeI	YGGCCR	3 cut(s)	226, 900, 1009
EagI	CGGCCG	1 cut(s)	1009
Eam1104I	CTCTTC	1 cut(s)	1197
EarI	CTCTTC	1 cut(s)	1197
EclXI	CGGCCG	1 cut(s)	1009
Eco130I	CCWWGG	1 cut(s)	498
Eco31I	GGTCTC	1 cut(s)	772
Eco52I	CGGCCG	1 cut(s)	1009
Eco57I	CTGAAG	2 cut(s)	1178, 1239
Eco88I	CYCGRG	2 cut(s)	323, 1205
EcoO109I	RGGNCCY	1 cut(s)	834
EcoRI	GAATTC	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	498
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	5 cut(s)	502, 580, 766, 972, 1159
FatI	CATG	5 cut(s)	498, 576, 762, 968, 1155
FauNDI	CATATG	1 cut(s)	726
Fnu4HI	GCNGC	5 cut(s)	5, 164, 167, 1012, 1211
FokI	GGATG	2 cut(s)	634, 763
Fsp4HI	GCNGC	5 cut(s)	5, 164, 167, 1012, 1211
FspBI	CTAG	6 cut(s)	48, 147, 686, 704, 986, 1285
GlaI	GCGC	3 cut(s)	162, 617, 1020
GluI	GCNGC	5 cut(s)	5, 164, 167, 1012, 1211
HaeII	RGCGCY	1 cut(s)	619
HaeIII	GGCC	4 cut(s)	228, 836, 902, 1011
HapII	CCGG	3 cut(s)	222, 619, 933
HgaI	GACGC	2 cut(s)	173, 206
HhaI	GCGC	3 cut(s)	163, 618, 1021
Hin1I	GRCGYC	2 cut(s)	184, 861
Hin1II	CATG	5 cut(s)	502, 580, 766, 972, 1159
Hin6I	GCGC	3 cut(s)	161, 616, 1019
HinP1I	GCGC	3 cut(s)	161, 616, 1019
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	5 cut(s)	173, 288, 524, 689, 1189
HpaII	CCGG	3 cut(s)	222, 619, 933
HphI	GGTGA	2 cut(s)	766, 842
Hpy166II	GTNNAC	6 cut(s)	430, 564, 957, 1135, 1240, 1257
Hpy188I	TCNGA	6 cut(s)	65, 87, 295, 611, 819, 1184
Hpy188III	TCNNGA	8 cut(s)	233, 693, 781, 845, 1051, 1067, 1196, 1268
Hpy8I	GTNNAC	6 cut(s)	430, 564, 957, 1135, 1240, 1257
Hpy99I	CGWCG	5 cut(s)	100, 158, 200, 239, 866
HpyAV	CCTTC	2 cut(s)	222, 690
HpyCH4III	ACNGT	2 cut(s)	982, 1093
HpyCH4IV	ACGT	4 cut(s)	241, 283, 861, 993
HpyCH4V	TGCA	5 cut(s)	368, 407, 625, 676, 807
HpyF10VI	GCNNNNNNNGC	8 cut(s)	255, 316, 509, 622, 682, 899, 971, 1210
HpyF3I	CTNAG	2 cut(s)	384, 883
HpySE526I	ACGT	4 cut(s)	241, 283, 861, 993
Hsp92I	GRCGYC	2 cut(s)	184, 861
Hsp92II	CATG	5 cut(s)	502, 580, 766, 972, 1159
HspAI	GCGC	3 cut(s)	161, 616, 1019
Kzo9I	GATC	6 cut(s)	82, 494, 535, 847, 925, 1005
LmnI	GCTCC	2 cut(s)	100, 324
Lsp1109I	GCAGC	1 cut(s)	1222
LweI	GCATC	3 cut(s)	148, 377, 612
MaeI	CTAG	6 cut(s)	48, 147, 686, 704, 986, 1285
MaeII	ACGT	4 cut(s)	241, 283, 861, 993
MaeIII	GTNAC	6 cut(s)	149, 230, 772, 865, 1113, 1280
MalI	GATC	6 cut(s)	84, 496, 537, 849, 927, 1007
MbiI	CCGCTC	1 cut(s)	1014
MboI	GATC	6 cut(s)	82, 494, 535, 847, 925, 1005
MboII	GAAGA	5 cut(s)	207, 401, 409, 782, 1184
MflI	RGATCY	2 cut(s)	494, 535
MluCI	AATT	5 cut(s)	66, 448, 871, 908, 1074
MlyI	GAGTC	4 cut(s)	297, 518, 698, 1183
MmeI	TCCRAC	1 cut(s)	404
MseI	TTAA	2 cut(s)	9, 1077
MslI	CAYNNNNRTG	3 cut(s)	357, 503, 779
MspA1I	CMGCKG	1 cut(s)	893
MspI	CCGG	3 cut(s)	222, 619, 933
MwoI	GCNNNNNNNGC	8 cut(s)	255, 316, 509, 622, 682, 899, 971, 1210
NcoI	CCATGG	1 cut(s)	498
NdeI	CATATG	1 cut(s)	726
NdeII	GATC	6 cut(s)	82, 494, 535, 847, 925, 1005
NlaIII	CATG	5 cut(s)	502, 580, 766, 972, 1159
NlaIV	GGNNCC	2 cut(s)	320, 1061
NmuCI	GTSAC	5 cut(s)	149, 230, 772, 865, 1113
NspV	TTCGAA	1 cut(s)	70
OliI	CACNNNNGTG	1 cut(s)	779
PaeR7I	CTCGAG	2 cut(s)	323, 1205
PcsI	WCGNNNNNNNCGW	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	173
Pfl23II	CGTACG	1 cut(s)	113
PflFI	GACNNNGTC	1 cut(s)	863
PinAI	ACCGGT	2 cut(s)	221, 932
PkrI	GCNGC	5 cut(s)	6, 165, 168, 1013, 1212
Ple19I	CGATCG	1 cut(s)	85
PleI	GAGTC	4 cut(s)	296, 518, 697, 1183
PpsI	GAGTC	4 cut(s)	296, 518, 697, 1183
PspLI	CGTACG	1 cut(s)	113
PspN4I	GGNNCC	2 cut(s)	320, 1061
PspPI	GGNCC	1 cut(s)	834
PspXI	VCTCGAGB	2 cut(s)	323, 1205
PsuI	RGATCY	2 cut(s)	494, 535
PsyI	GACNNNGTC	1 cut(s)	863
PvuI	CGATCG	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	893
RsaI	GTAC	5 cut(s)	115, 244, 268, 956, 984
RsaNI	GTAC	5 cut(s)	114, 243, 267, 955, 983
RseI	CAYNNNNRTG	3 cut(s)	357, 503, 779
SaqAI	TTAA	2 cut(s)	9, 1077
SatI	GCNGC	5 cut(s)	5, 164, 167, 1012, 1211
Sau3AI	GATC	6 cut(s)	82, 494, 535, 847, 925, 1005
Sau96I	GGNCC	1 cut(s)	834
SchI	GAGTC	4 cut(s)	297, 518, 698, 1183
SfaNI	GCATC	3 cut(s)	148, 377, 612
Sfr274I	CTCGAG	2 cut(s)	323, 1205
SfuI	TTCGAA	1 cut(s)	70
SgrAI	CRCCGGYG	1 cut(s)	221
SlaI	CTCGAG	2 cut(s)	323, 1205
SmiMI	CAYNNNNRTG	3 cut(s)	357, 503, 779
SmlI	CTYRAG	3 cut(s)	323, 843, 1205
SmoI	CTYRAG	3 cut(s)	323, 843, 1205
SpeI	ACTAGT	1 cut(s)	703
Sse9I	AATT	5 cut(s)	66, 448, 871, 908, 1074
SsiI	CCGC	5 cut(s)	5, 164, 167, 425, 1012
SspMI	CTAG	6 cut(s)	48, 147, 686, 704, 986, 1285
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	2 cut(s)	982, 1093
TaiI	ACGT	4 cut(s)	244, 286, 864, 996
TaqI	TCGA	6 cut(s)	70, 135, 195, 324, 437, 1206
TasI	AATT	5 cut(s)	66, 448, 871, 908, 1074
TatI	WGTACW	1 cut(s)	954
TauI	GCSGC	4 cut(s)	7, 166, 169, 1014
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	2 cut(s)	9, 1077
Tru9I	TTAA	2 cut(s)	9, 1077
TscAI	CASTG	1 cut(s)	1008
TseFI	GTSAC	5 cut(s)	149, 230, 772, 865, 1113
TseI	GCWGC	1 cut(s)	1210
Tsp45I	GTSAC	5 cut(s)	149, 230, 772, 865, 1113
TspDTI	ATGAA	4 cut(s)	138, 410, 713, 743
TspGWI	ACGGA	3 cut(s)	113, 252, 643
TspRI	CASTG	1 cut(s)	1008
Tth111I	GACNNNGTC	1 cut(s)	863
XapI	RAATTY	3 cut(s)	66, 448, 908
XhoI	CTCGAG	2 cut(s)	323, 1205
XspI	CTAG	6 cut(s)	48, 147, 686, 704, 986, 1285
ZraI	GACGTC	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.