Rorug05G0080400

Metal tolerance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0005973
Physical Location & Seq
Forward (+)
6970037 .. 6971309
1273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0080400.1

Sequence Viewer

Length: 483 bp
ATGGAGAGCTATCATAGCCATGCCCTCTCACCAAACCAGTGTGGCTCAAGCGTGGTCCAGACCATAGATGCACCACTTCCTCTCGTTTGGTCAATCCTTCGCCAGTTCGATAAGCCTCAAGCCTACAAGCAGTTCATAAGGAGCTGCAAAATGCGCGCTGGGGATGGAGGCGTAGGAAGCATACGTGAAGTGATGGTCAGCACTGGCTTACCTGCCAAAACCAGCATGGAGAGGCTCGACAAGCTTGACGATGACAAGCATGTCCTTGATTTCAGCATTGTTGGCGGAGAACACAAGCTGGTGAATTACAGTTCTACTACGACGGTGCAAGAGAAAGGTAGAAAGACTGTTGTGACTCAGTCTTATGTGGTGGATGTCCCTGCTGGGAGTAGTAAAGAGGATACTTGCTTGTTTGCTAATACTATCATAGAATGCAACCTCAGGTCACTGGCTAAAGTTACAGAAAGGATGGCTGCTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cation_efflux ZT_dimer

Protein Analysis

160

Amino Acids

17.57

Weight (kDa)

7.68

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 17 - 155 2.9e-16 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
Acc36I ACCTGC 1 cut(s) 220
AccII CGCG 1 cut(s) 156
AciI CCGC 1 cut(s) 285
AluBI AGCT 4 cut(s) 9, 144, 244, 298
AluI AGCT 4 cut(s) 9, 144, 244, 298
ApeKI GCWGC 2 cut(s) 144, 473
AspLEI GCGC 2 cut(s) 156, 158
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 21, 313
AvaII GGWCC 1 cut(s) 55
AxyI CCTNAGG 1 cut(s) 440
BbvI GCAGC 2 cut(s) 131, 460
BccI CCATC 3 cut(s) 158, 187, 463
BciVI GTATCC 1 cut(s) 394
BfuAI ACCTGC 1 cut(s) 220
BfuI GTATCC 1 cut(s) 394
BisI GCNGC 2 cut(s) 145, 474
BlsI GCNGC 2 cut(s) 146, 475
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmsI GCATC 1 cut(s) 58
BpuEI CTTGAG 2 cut(s) 31, 102
BsaAI YACGTR 1 cut(s) 185
Bse1I ACTGG 4 cut(s) 37, 103, 208, 453
Bse21I CCTNAGG 1 cut(s) 440
BseGI GGATG 3 cut(s) 169, 379, 474
BseMII CTCAG 2 cut(s) 371, 454
BseNI ACTGG 4 cut(s) 37, 103, 208, 453
BsePI GCGCGC 1 cut(s) 154
BseXI GCAGC 2 cut(s) 131, 460
BseYI CCCAGC 2 cut(s) 158, 383
Bsh1236I CGCG 1 cut(s) 156
BslFI GGGAC 1 cut(s) 362
BsmFI GGGAC 1 cut(s) 362
BsmI GAATGC 1 cut(s) 437
BspACI CCGC 1 cut(s) 285
BspCNI CTCAG 2 cut(s) 370, 453
BspFNI CGCG 1 cut(s) 156
BspMI ACCTGC 1 cut(s) 220
BsrI ACTGG 4 cut(s) 37, 103, 208, 453
BssHII GCGCGC 1 cut(s) 154
Bst4CI ACNGT 3 cut(s) 311, 325, 349
BstBAI YACGTR 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 2 cut(s) 357, 440
BstF5I GGATG 3 cut(s) 169, 379, 474
BstFNI CGCG 1 cut(s) 156
BstHHI GCGC 2 cut(s) 156, 158
BstMWI GCNNNNNNNGC 5 cut(s) 15, 153, 177, 241, 282
BstNSI RCATGY 1 cut(s) 263
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 131, 460
Bsu36I CCTNAGG 1 cut(s) 440
BsuI GTATCC 1 cut(s) 394
BtsCI GGATG 3 cut(s) 169, 379, 474
BtsIMutI CAGTG 3 cut(s) 44, 201, 446
BveI ACCTGC 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 156
CfoI GCGC 2 cut(s) 156, 158
Cfr13I GGNCC 1 cut(s) 55
CviAII CATG 3 cut(s) 20, 226, 260
DdeI CTNAG 2 cut(s) 357, 440
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
EciI GGCGGA 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 55
Eco81I CCTNAGG 1 cut(s) 440
FaeI CATG 3 cut(s) 23, 229, 263
FaiI YATR 9 cut(s) 15, 21, 65, 137, 182, 227, 261, 366, 428
FaqI GGGAC 1 cut(s) 362
FatI CATG 3 cut(s) 19, 225, 259
Fnu4HI GCNGC 2 cut(s) 145, 474
FokI GGATG 2 cut(s) 176, 386
Fsp4HI GCNGC 2 cut(s) 145, 474
GlaI GCGC 2 cut(s) 155, 157
GluI GCNGC 2 cut(s) 145, 474
GsaI CCCAGC 2 cut(s) 162, 387
HhaI GCGC 2 cut(s) 156, 158
Hin1II CATG 3 cut(s) 23, 229, 263
Hin6I GCGC 2 cut(s) 154, 156
HinP1I GCGC 2 cut(s) 154, 156
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 1 cut(s) 355
HphI GGTGA 2 cut(s) 21, 313
Hpy188III TCNNGA 1 cut(s) 58
Hpy99I CGWCG 1 cut(s) 325
HpyAV CCTTC 1 cut(s) 107
HpyCH4III ACNGT 3 cut(s) 311, 325, 349
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 4 cut(s) 71, 147, 328, 435
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 153, 177, 241, 282
HpyF3I CTNAG 2 cut(s) 357, 440
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 3 cut(s) 23, 229, 263
HspAI GCGC 2 cut(s) 154, 156
LmnI GCTCC 1 cut(s) 141
Lsp1109I GCAGC 2 cut(s) 131, 460
LweI GCATC 1 cut(s) 58
MaeII ACGT 1 cut(s) 184
MaeIII GTNAC 3 cut(s) 352, 444, 457
MluCI AATT 2 cut(s) 304, 478
MlyI GAGTC 1 cut(s) 349
MnlI CCTC 7 cut(s) 35, 90, 126, 161, 225, 391, 449
MslI CAYNNNNRTG 1 cut(s) 18
Mva1269I GAATGC 1 cut(s) 437
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 5 cut(s) 15, 153, 177, 241, 282
NlaIII CATG 3 cut(s) 23, 229, 263
NmuCI GTSAC 2 cut(s) 352, 444
NspI RCATGY 1 cut(s) 263
PauI GCGCGC 1 cut(s) 154
PctI GAATGC 1 cut(s) 437
PflFI GACNNNGTC 1 cut(s) 358
PkrI GCNGC 2 cut(s) 146, 475
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
Ppu21I YACGTR 1 cut(s) 185
PspFI CCCAGC 2 cut(s) 158, 383
PspPI GGNCC 1 cut(s) 55
PsyI GACNNNGTC 1 cut(s) 358
PteI GCGCGC 1 cut(s) 154
RseI CAYNNNNRTG 1 cut(s) 18
SatI GCNGC 2 cut(s) 145, 474
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 349
SetI ASST 9 cut(s) 11, 146, 187, 214, 246, 300, 340, 441, 446
SfaNI GCATC 1 cut(s) 58
SinI GGWCC 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 18
SmlI CTYRAG 2 cut(s) 46, 117
SmoI CTYRAG 2 cut(s) 46, 117
Sse9I AATT 2 cut(s) 304, 478
SsiI CCGC 1 cut(s) 285
TaaI ACNGT 3 cut(s) 311, 325, 349
TaiI ACGT 1 cut(s) 187
TaqI TCGA 2 cut(s) 108, 237
TasI AATT 2 cut(s) 304, 478
TscAI CASTG 3 cut(s) 44, 208, 453
TseFI GTSAC 2 cut(s) 352, 444
TseI GCWGC 2 cut(s) 144, 473
Tsp45I GTSAC 2 cut(s) 352, 444
TspDTI ATGAA 1 cut(s) 124
TspRI CASTG 3 cut(s) 44, 208, 453
Tth111I GACNNNGTC 1 cut(s) 358
VpaK11BI GGWCC 1 cut(s) 55
XceI RCATGY 1 cut(s) 263
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.