Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005973

Physical Location & Seq

Genomic Coordinates Reverse (-)

17614036 .. 17620781

Gene Structure 6746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG167800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAGACCATGGCTGAAGAGGGTTGGTTGCCAGGAAGTCTCACAGAGGATGAAATGAAGCAGCTAGTTAAGAGTGAGAGGATGGCAGTTCATATATCAAATGTAGCTAATTTGCTGCTCTTTGTTGCAAAAGTTTATGCTTCAATCATGAGCAGATCACTGGCAGTTATTGCCTCTACCTTGGATTCCCTCTTGGATCTCTTGTCTGGCTTTATTTTGTGGTTCACTGCCCATGCCATGAGAAAGCCAAACCGCTTTCATTATCCTATTGGAAAGAAACGTATGCAACCAGTGGGTATCATTGTCTTTGCATCTGTTATGGCAACTCTTGGACTGCAAATATTGCTTGAGTCTGCTCGGGAACTCGTCTCAAAGTCCCCAACAGAAATGAAAGATGCACAGGAGAAGTGGATGATTGCCATCATGGTCTCGGTCACAGTAGTGAAGTTTCTGCTCATGCTCTACTGTCGTAGATTTGAAAATGAAATTGTACGCGCCTATGCACAAGACCACTTCTTTGATGTCATTACTAATTCAGTTGGTCTAGCAGCAGCAGTCCTAGCCCACCGGTATAAATGGTGGATTGATCCTGCTGGTGCTATTGTGATTGCACTTTACACCATCAATACATGGGCGAGGACAGTCTTGGAGAATGTGCGTTCGCTAATCGGAAGAACAGCTCCACCTGAGTTTTTGGCCAAGTTGACCTATCTGATATGGAACCACCATGAGGAGATCAAGCACATTGATACAGTGAGAGCATACACATTTGGTAACTATTACTTTGTGGAGGTCGACATAGTCCTGCCAGAAGACATGCTTCTGCACAAAGCACATAACATTGGCGAGACACTCCAAGAGAAGCTCGAGCAACTTGCTGAAGTCGAACGGGCCTTTGTTCATATCGATTTTGAGTTTAGTCACCGGCCGGAACACAAAACTAGCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux ZT_dimer

Protein Analysis

316

Amino Acids

36.19

Weight (kDa)

6.36

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	31 - 223	9.8e-34	Cation efflux transmembrane domain
ZT_dimer	PF16916	230 - 303	2.6e-09	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16310 AT1G16310 AT1G79520 AT1G79520 AT1G79520 AT1G79520
fragaria_vesca	FvH4_3g14550 FvH4_3g14550 FvH4_3g14550 FvH4_3g14550 FvH4_3g14550
malus_domestica	MD05G1235400.v1.1 MD10G1211700.v1.1 MD10G1211900.v1.1
prunus_persica	Prupe.4G131000_v2.0.a1 Prupe.4G131000_v2.0.a1
pyrus_communis	pycom05g21230
rosa_chinensis	RchiOBHm_Chr5g0023931
rosa_laevigata	RLG00000032750
rosa_multiflora	Rmu_sc0004175.1_g000012 Rmu_sc0005837.1_g000003
rosa_roxburghii	Rroxscaffold_1G00055290
rosa_rugosa	Rorug05G0080400
rosa_samantha	Rh5AG170800 Rh5BG167800 Rh5CG183300
rosa_wichuraiana	Rw5G015440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	795
AccII	CGCG	1 cut(s)	495
AciI	CCGC	1 cut(s)	253
AclWI	GGATC	2 cut(s)	204, 581
AcoI	YGGCCR	2 cut(s)	696, 926
AcuI	CTGAAG	2 cut(s)	36, 900
AfaI	GTAC	1 cut(s)	492
AfiI	CCNNNNNNNGG	1 cut(s)	730
AgeI	ACCGGT	1 cut(s)	567
AgsI	TTSAA	2 cut(s)	144, 479
AjnI	CCWGG	1 cut(s)	31
AleI	CACNNNNGTG	1 cut(s)	440
AluBI	AGCT	4 cut(s)	64, 107, 680, 865
AluI	AGCT	4 cut(s)	64, 107, 680, 865
Alw26I	GTCTC	4 cut(s)	44, 373, 433, 842
AlwI	GGATC	2 cut(s)	204, 581
Ama87I	CYCGRG	2 cut(s)	357, 866
AoxI	GGCC	3 cut(s)	696, 891, 926
ApeKI	GCWGC	4 cut(s)	61, 115, 548, 551
ArsI	GACNNNNNNTTYG	2 cut(s)	500, 532
AsiGI	ACCGGT	1 cut(s)	567
AspLEI	GCGC	1 cut(s)	497
AspS9I	GGNCC	1 cut(s)	891
AsuHPI	GGTGA	1 cut(s)	914
AvaI	CYCGRG	2 cut(s)	357, 866
BalI	TGGCCA	1 cut(s)	698
BbsI	GAAGAC	1 cut(s)	819
BbvI	GCAGC	4 cut(s)	73, 102, 560, 563
BccI	CCATC	3 cut(s)	76, 428, 629
BcgI	CGANNNNNNTGC	2 cut(s)	857, 891
BciT130I	CCWGG	1 cut(s)	33
BcoDI	GTCTC	4 cut(s)	44, 373, 433, 842
BfaI	CTAG	4 cut(s)	65, 545, 560, 942
BisI	GCNGC	4 cut(s)	62, 116, 549, 552
BlsI	GCNGC	4 cut(s)	63, 117, 550, 553
Bme1390I	CCNGG	1 cut(s)	33
BmeT110I	CYCGRG	2 cut(s)	357, 866
BmgT120I	GGNCC	1 cut(s)	891
BmiI	GGNNCC	1 cut(s)	722
BmrFI	CCNGG	1 cut(s)	33
BmsI	GCATC	2 cut(s)	320, 385
BpiI	GAAGAC	1 cut(s)	819
BpuEI	CTTGAG	1 cut(s)	368
Bsa29I	ATCGAT	1 cut(s)	906
BsaBI	GATNNNNATC	1 cut(s)	419
BsaI	GGTCTC	1 cut(s)	433
BsaJI	CCNNGG	2 cut(s)	9, 180
BsaWI	WCCGGW	1 cut(s)	567
Bsc4I	CCNNNNNNNGG	1 cut(s)	730
Bse118I	RCCGGY	2 cut(s)	567, 924
Bse1I	ACTGG	2 cut(s)	165, 290
Bse8I	GATNNNNATC	1 cut(s)	419
BseBI	CCWGG	1 cut(s)	33
BseCI	ATCGAT	1 cut(s)	906
BseDI	CCNNGG	2 cut(s)	9, 180
BseGI	GGATG	3 cut(s)	55, 87, 417
BseJI	GATNNNNATC	1 cut(s)	419
BseLI	CCNNNNNNNGG	1 cut(s)	730
BseMII	CTCAG	1 cut(s)	678
BseNI	ACTGG	2 cut(s)	165, 290
BseRI	GAGGAG	1 cut(s)	746
BseX3I	CGGCCG	1 cut(s)	926
BseXI	GCAGC	4 cut(s)	73, 102, 560, 563
BsgI	GTGCAG	1 cut(s)	809
Bsh1236I	CGCG	1 cut(s)	495
Bsh1285I	CGRYCG	1 cut(s)	929
BshFI	GGCC	3 cut(s)	698, 893, 928
BshTI	ACCGGT	1 cut(s)	567
BshVI	ATCGAT	1 cut(s)	906
BsiEI	CGRYCG	1 cut(s)	929
BsiHKCI	CYCGRG	2 cut(s)	357, 866
BsiSI	CCGG	3 cut(s)	568, 925, 929
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	1 cut(s)	730
BsmAI	GTCTC	4 cut(s)	44, 373, 433, 842
BsmBI	CGTCTC	1 cut(s)	373
BsmFI	GGGAC	1 cut(s)	361
BsnI	GGCC	3 cut(s)	698, 893, 928
Bso31I	GGTCTC	1 cut(s)	433
BsoBI	CYCGRG	2 cut(s)	357, 866
Bsp143I	GATC	4 cut(s)	155, 196, 586, 735
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	1 cut(s)	253
BspANI	GGCC	3 cut(s)	698, 893, 928
BspCNI	CTCAG	1 cut(s)	679
BspDI	ATCGAT	1 cut(s)	906
BspFNI	CGCG	1 cut(s)	495
BspHI	TCATGA	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	722
BspPI	GGATC	2 cut(s)	204, 581
BspTNI	GGTCTC	1 cut(s)	433
BsrFI	RCCGGY	2 cut(s)	567, 924
BsrI	ACTGG	2 cut(s)	165, 290
BssAI	RCCGGY	2 cut(s)	567, 924
BssECI	CCNNGG	2 cut(s)	9, 180
BssMI	GATC	4 cut(s)	155, 196, 586, 735
BssT1I	CCWWGG	2 cut(s)	9, 180
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	4 cut(s)	439, 467, 643, 754
Bst6I	CTCTTC	1 cut(s)	12
BstAPI	GCANNNNNTGC	2 cut(s)	170, 343
BstDEI	CTNAG	1 cut(s)	687
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	3 cut(s)	55, 87, 417
BstFNI	CGCG	1 cut(s)	495
BstHHI	GCGC	1 cut(s)	497
BstKTI	GATC	4 cut(s)	158, 199, 589, 738
BstMAI	GTCTC	4 cut(s)	44, 373, 433, 842
BstMBI	GATC	4 cut(s)	155, 196, 586, 735
BstMCI	CGRYCG	1 cut(s)	929
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 343, 560
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	1 cut(s)	820
BstSCI	CCNGG	1 cut(s)	31
BstUI	CGCG	1 cut(s)	495
BstV1I	GCAGC	4 cut(s)	73, 102, 560, 563
BstV2I	GAAGAC	1 cut(s)	819
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BstZI	CGGCCG	1 cut(s)	926
Bsu15I	ATCGAT	1 cut(s)	906
BsuRI	GGCC	3 cut(s)	698, 893, 928
BsuTUI	ATCGAT	1 cut(s)	906
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	3 cut(s)	55, 87, 417
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	4 cut(s)	158, 225, 297, 759
CciI	TCATGA	1 cut(s)	147
CfoI	GCGC	1 cut(s)	497
Cfr10I	RCCGGY	2 cut(s)	567, 924
Cfr13I	GGNCC	1 cut(s)	891
ClaI	ATCGAT	1 cut(s)	906
Csp6I	GTAC	1 cut(s)	491
CspAI	ACCGGT	1 cut(s)	567
CviAII	CATG	9 cut(s)	10, 148, 233, 238, 424, 457, 630, 728, 817
CviQI	GTAC	1 cut(s)	491
DdeI	CTNAG	1 cut(s)	687
DpnI	GATC	4 cut(s)	157, 198, 588, 737
DpnII	GATC	4 cut(s)	155, 196, 586, 735
EaeI	YGGCCR	2 cut(s)	696, 926
EagI	CGGCCG	1 cut(s)	926
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
EclXI	CGGCCG	1 cut(s)	926
Eco130I	CCWWGG	2 cut(s)	9, 180
Eco31I	GGTCTC	1 cut(s)	433
Eco52I	CGGCCG	1 cut(s)	926
Eco57I	CTGAAG	2 cut(s)	36, 900
Eco88I	CYCGRG	2 cut(s)	357, 866
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	2 cut(s)	9, 180
ErhI	CCWWGG	2 cut(s)	9, 180
Esp3I	CGTCTC	1 cut(s)	373
FaeI	CATG	9 cut(s)	13, 151, 236, 241, 427, 460, 633, 731, 820
FalI	AAGNNNNNCTT	2 cut(s)	804, 836
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	9 cut(s)	9, 147, 232, 237, 423, 456, 629, 727, 816
FblI	GTMKAC	1 cut(s)	795
Fnu4HI	GCNGC	4 cut(s)	62, 116, 549, 552
FokI	GGATG	3 cut(s)	62, 94, 424
Fsp4HI	GCNGC	4 cut(s)	62, 116, 549, 552
FspBI	CTAG	4 cut(s)	65, 545, 560, 942
GlaI	GCGC	1 cut(s)	496
GluI	GCNGC	4 cut(s)	62, 116, 549, 552
HaeIII	GGCC	3 cut(s)	698, 893, 928
HapII	CCGG	3 cut(s)	568, 925, 929
HhaI	GCGC	1 cut(s)	497
Hin1II	CATG	9 cut(s)	13, 151, 236, 241, 427, 460, 633, 731, 820
Hin6I	GCGC	1 cut(s)	495
HinP1I	GCGC	1 cut(s)	495
HincII	GTYRAC	2 cut(s)	705, 796
HindII	GTYRAC	2 cut(s)	705, 796
HinfI	GANTC	2 cut(s)	185, 350
HpaII	CCGG	3 cut(s)	568, 925, 929
HphI	GGTGA	1 cut(s)	914
Hpy166II	GTNNAC	3 cut(s)	225, 705, 796
Hpy188I	TCNGA	2 cut(s)	671, 714
Hpy188III	TCNNGA	2 cut(s)	148, 359
Hpy8I	GTNNAC	3 cut(s)	225, 705, 796
HpyCH4III	ACNGT	4 cut(s)	439, 467, 643, 754
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	8 cut(s)	128, 286, 311, 337, 398, 503, 611, 826
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 343, 560
HpyF3I	CTNAG	1 cut(s)	687
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	9 cut(s)	13, 151, 236, 241, 427, 460, 633, 731, 820
HspAI	GCGC	1 cut(s)	495
Kzo9I	GATC	4 cut(s)	155, 196, 586, 735
LmnI	GCTCC	1 cut(s)	685
Lsp1109I	GCAGC	4 cut(s)	73, 102, 560, 563
LweI	GCATC	2 cut(s)	320, 385
MaeI	CTAG	4 cut(s)	65, 545, 560, 942
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	3 cut(s)	433, 773, 920
MalI	GATC	4 cut(s)	157, 198, 588, 737
MboI	GATC	4 cut(s)	155, 196, 586, 735
MboII	GAAGA	3 cut(s)	29, 684, 824
MflI	RGATCY	1 cut(s)	196
MlsI	TGGCCA	1 cut(s)	698
MluCI	AATT	3 cut(s)	109, 486, 532
MluNI	TGGCCA	1 cut(s)	698
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	8 cut(s)	13, 40, 72, 184, 200, 630, 724, 784
Mox20I	TGGCCA	1 cut(s)	698
MscI	TGGCCA	1 cut(s)	698
MseI	TTAA	1 cut(s)	69
MslI	CAYNNNNRTG	1 cut(s)	440
Msp20I	TGGCCA	1 cut(s)	698
MspI	CCGG	3 cut(s)	568, 925, 929
MspR9I	CCNGG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	33
MvnI	CGCG	1 cut(s)	495
MwoI	GCNNNNNNNGC	3 cut(s)	170, 343, 560
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	4 cut(s)	155, 196, 586, 735
NlaIII	CATG	9 cut(s)	13, 151, 236, 241, 427, 460, 633, 731, 820
NlaIV	GGNNCC	1 cut(s)	722
NmuCI	GTSAC	2 cut(s)	433, 920
NspI	RCATGY	1 cut(s)	820
OliI	CACNNNNGTG	1 cut(s)	440
PaeR7I	CTCGAG	1 cut(s)	866
PagI	TCATGA	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	185
PflFI	GACNNNGTC	1 cut(s)	800
PinAI	ACCGGT	1 cut(s)	567
PkrI	GCNGC	4 cut(s)	63, 117, 550, 553
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	1 cut(s)	722
PspPI	GGNCC	1 cut(s)	891
PspXI	VCTCGAGB	1 cut(s)	866
PsuI	RGATCY	1 cut(s)	196
PsyI	GACNNNGTC	1 cut(s)	800
RsaI	GTAC	1 cut(s)	492
RsaNI	GTAC	1 cut(s)	491
RseI	CAYNNNNRTG	1 cut(s)	440
SalI	GTCGAC	1 cut(s)	794
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	4 cut(s)	62, 116, 549, 552
Sau3AI	GATC	4 cut(s)	155, 196, 586, 735
Sau96I	GGNCC	1 cut(s)	891
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	33
SetI	ASST	9 cut(s)	66, 109, 182, 283, 682, 688, 710, 795, 867
SfaNI	GCATC	2 cut(s)	320, 385
Sfr274I	CTCGAG	1 cut(s)	866
SlaI	CTCGAG	1 cut(s)	866
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	2 cut(s)	347, 866
SmoI	CTYRAG	2 cut(s)	347, 866
Sse9I	AATT	3 cut(s)	109, 486, 532
SsiI	CCGC	1 cut(s)	253
SspI	AATATT	1 cut(s)	342
SspMI	CTAG	4 cut(s)	65, 545, 560, 942
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	2 cut(s)	9, 180
TaaI	ACNGT	4 cut(s)	439, 467, 643, 754
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	4 cut(s)	795, 867, 885, 906
TaqII	GACCGA	1 cut(s)	421
TasI	AATT	3 cut(s)	109, 486, 532
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	4 cut(s)	165, 232, 297, 759
TseFI	GTSAC	2 cut(s)	433, 920
TseI	GCWGC	4 cut(s)	61, 115, 548, 551
Tsp45I	GTSAC	2 cut(s)	433, 920
TspDTI	ATGAA	7 cut(s)	66, 71, 80, 248, 404, 498, 890
TspRI	CASTG	4 cut(s)	165, 232, 297, 759
Tth111I	GACNNNGTC	1 cut(s)	800
XceI	RCATGY	1 cut(s)	820
XhoI	CTCGAG	1 cut(s)	866
XmiI	GTMKAC	1 cut(s)	795
XspI	CTAG	4 cut(s)	65, 545, 560, 942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.