Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005973

Physical Location & Seq

Genomic Coordinates Reverse (-)

18592357 .. 18596115

Gene Structure 3759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032750

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGAACGAAACTTTGCCATTACTTTTGTGAGTGGTGGATTCATCATTCACGATTCACCCCAAAAATATTATTCCATGTCTTTTACAACTTTGAATCCACACCAGGACATGGACGAAGCTTCTGATTCTTGGAGTGGTTCTTCCTTGGAAAATAGGTTAAAGATGAGAAGGGGATTTTTGGGTTGTTGGAAAGTTCTGAAACTTTTTGAAGAATTGGGGAAAAAGTACAGAGTTGAGCAATATTACAAGCAACAAGGAAGGCTTCTTGAAGGGTACAGTGAGATGGAGACCATGGCTGAAGAGGGTTGGTTGCCAGGAAGTCTCACAGAGGATGAAATGAAGCAGCTAGCCAAGAGTGAGAGGATGGCAGTTCATATATCAAATGTAGCTAATTTGCTGCTCTTTGCTGCAAAAGTTTATGCTTCAATCATGAGCAGATCACTGGCAGTTATTGCCTCTACCTTGGATTCCCTCTTGGATCTCTTGTCTGGCTTTATTTTGTGGTTCACTGCCAATGCCATGAGAAAGCCAAACCGCTTTCATTATCCTATTGGAAAGAAACGTATGCAACCAGTGTCCCCAACAGAAATGAAAGATGCACAGGAGAAGTGGATGATTGCCATCATGGTCTCGGTCACAGTGGTGAAGTTTCTGCTCATGGTCTACTGTCGTAGATTTAAAAATGAAATTGTACGCGCCTATGCACAAGACCACTTCTTTGATGTTGTTACTAATTCAGTTGGTCTAGCAGCAGCAGTCCTAGCCCACCGGTATGCATGGTGGATTGATCCTACTGGTGCTATTGTGATTGCACTTTACACCATCAATACATGGGCGAGGACAGTCTTGGAGAATGTGCATTCGCTAATTGGAAGAACAGCTCCACCTGAGTTTTTGGCCAAGTTAACCTATCTGATATGGAACCACCATGAGGAGATCAAGCACATTGATACAGTGAGAGCATACACATTTGGTAACTATTACTTTGTGGAGGTCGACATAGTCTTGCCAGAAGACATGCTTCTGAACAAAGCACATAACATTGGCGAGACACTCCAAGAGAAGCTCGAGCAACTTGCTGAAGTCGAACGGGCCTTTGTGCATATCGATTTTGAGTTTAGTCACCGGCCGGAACACAAAACTAGCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux ZT_dimer

Protein Analysis

384

Amino Acids

44.24

Weight (kDa)

6.55

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	125 - 192	7.4e-13	Cation efflux transmembrane domain
Cation_efflux	PF01545	203 - 290	2.1e-09	Cation efflux transmembrane domain
ZT_dimer	PF16916	297 - 370	4.7e-09	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16310 AT1G16310 AT1G79520 AT1G79520 AT1G79520 AT1G79520
fragaria_vesca	FvH4_3g14550 FvH4_3g14550 FvH4_3g14550 FvH4_3g14550 FvH4_3g14550
malus_domestica	MD05G1235400.v1.1 MD10G1211700.v1.1 MD10G1211900.v1.1
prunus_persica	Prupe.4G131000_v2.0.a1 Prupe.4G131000_v2.0.a1
pyrus_communis	pycom05g21230
rosa_chinensis	RchiOBHm_Chr5g0023931
rosa_laevigata	RLG00000032750
rosa_multiflora	Rmu_sc0004175.1_g000012 Rmu_sc0005837.1_g000003
rosa_roxburghii	Rroxscaffold_1G00055290
rosa_rugosa	Rorug05G0080400
rosa_samantha	Rh5AG170800 Rh5BG167800 Rh5CG183300
rosa_wichuraiana	Rw5G015440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	109
AccI	GTMKAC	2 cut(s)	663, 996
AccII	CGCG	1 cut(s)	696
AciI	CCGC	1 cut(s)	535
AclWI	GGATC	2 cut(s)	486, 782
AcoI	YGGCCR	2 cut(s)	897, 1127
AcuI	CTGAAG	2 cut(s)	318, 1101
AfaI	GTAC	3 cut(s)	227, 275, 693
AfiI	CCNNNNNNNGG	2 cut(s)	109, 931
AgeI	ACCGGT	1 cut(s)	768
AgsI	TTSAA	4 cut(s)	94, 209, 269, 426
AjnI	CCWGG	2 cut(s)	102, 313
AleI	CACNNNNGTG	1 cut(s)	641
AluBI	AGCT	5 cut(s)	119, 346, 389, 881, 1066
AluI	AGCT	5 cut(s)	119, 346, 389, 881, 1066
Alw26I	GTCTC	4 cut(s)	281, 326, 634, 1043
AlwI	GGATC	2 cut(s)	486, 782
Ama87I	CYCGRG	1 cut(s)	1067
AoxI	GGCC	3 cut(s)	897, 1092, 1127
ApeKI	GCWGC	5 cut(s)	343, 397, 407, 749, 752
ArsI	GACNNNNNNTTYG	2 cut(s)	701, 733
AsiGI	ACCGGT	1 cut(s)	768
AspLEI	GCGC	1 cut(s)	698
AspS9I	GGNCC	1 cut(s)	1092
AsuHPI	GGTGA	3 cut(s)	48, 655, 1115
AsuNHI	GCTAGC	1 cut(s)	346
AvaI	CYCGRG	1 cut(s)	1067
BalI	TGGCCA	1 cut(s)	899
BbsI	GAAGAC	1 cut(s)	1020
BbvI	GCAGC	5 cut(s)	355, 384, 394, 761, 764
BccI	CCATC	4 cut(s)	277, 358, 629, 830
BcgI	CGANNNNNNTGC	2 cut(s)	1058, 1092
BciT130I	CCWGG	2 cut(s)	104, 315
BcoDI	GTCTC	4 cut(s)	281, 326, 634, 1043
BfaI	CTAG	4 cut(s)	347, 746, 761, 1143
BisI	GCNGC	5 cut(s)	344, 398, 408, 750, 753
BlsI	GCNGC	5 cut(s)	345, 399, 409, 751, 754
Bme1390I	CCNGG	2 cut(s)	104, 315
BmeT110I	CYCGRG	1 cut(s)	1067
BmgT120I	GGNCC	1 cut(s)	1092
BmiI	GGNNCC	1 cut(s)	923
BmrFI	CCNGG	2 cut(s)	104, 315
BmsI	GCATC	1 cut(s)	586
BmtI	GCTAGC	1 cut(s)	350
BpiI	GAAGAC	1 cut(s)	1020
Bsa29I	ATCGAT	1 cut(s)	1107
BsaBI	GATNNNNATC	1 cut(s)	620
BsaI	GGTCTC	2 cut(s)	281, 634
BsaJI	CCNNGG	3 cut(s)	144, 291, 462
BsaWI	WCCGGW	1 cut(s)	768
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 931
Bse118I	RCCGGY	2 cut(s)	768, 1125
Bse1I	ACTGG	3 cut(s)	447, 572, 799
Bse8I	GATNNNNATC	1 cut(s)	620
BseBI	CCWGG	2 cut(s)	104, 315
BseCI	ATCGAT	1 cut(s)	1107
BseDI	CCNNGG	3 cut(s)	144, 291, 462
BseGI	GGATG	3 cut(s)	337, 369, 618
BseJI	GATNNNNATC	1 cut(s)	620
BseLI	CCNNNNNNNGG	2 cut(s)	109, 931
BseMII	CTCAG	1 cut(s)	879
BseNI	ACTGG	3 cut(s)	447, 572, 799
BseRI	GAGGAG	1 cut(s)	947
BseX3I	CGGCCG	1 cut(s)	1127
BseXI	GCAGC	5 cut(s)	355, 384, 394, 761, 764
Bsh1236I	CGCG	1 cut(s)	696
Bsh1285I	CGRYCG	1 cut(s)	1130
BshFI	GGCC	3 cut(s)	899, 1094, 1129
BshTI	ACCGGT	1 cut(s)	768
BshVI	ATCGAT	1 cut(s)	1107
BsiEI	CGRYCG	1 cut(s)	1130
BsiHKCI	CYCGRG	1 cut(s)	1067
BsiSI	CCGG	3 cut(s)	769, 1126, 1130
BslFI	GGGAC	1 cut(s)	562
BslI	CCNNNNNNNGG	2 cut(s)	109, 931
BsmAI	GTCTC	4 cut(s)	281, 326, 634, 1043
BsmFI	GGGAC	1 cut(s)	562
BsmI	GAATGC	1 cut(s)	859
BsnI	GGCC	3 cut(s)	899, 1094, 1129
Bso31I	GGTCTC	2 cut(s)	281, 634
BsoBI	CYCGRG	1 cut(s)	1067
Bsp143I	GATC	4 cut(s)	437, 478, 787, 936
Bsp19I	CCATGG	1 cut(s)	291
BspACI	CCGC	1 cut(s)	535
BspANI	GGCC	3 cut(s)	899, 1094, 1129
BspCNI	CTCAG	1 cut(s)	880
BspDI	ATCGAT	1 cut(s)	1107
BspFNI	CGCG	1 cut(s)	696
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	1 cut(s)	923
BspOI	GCTAGC	1 cut(s)	350
BspPI	GGATC	2 cut(s)	486, 782
BspTNI	GGTCTC	2 cut(s)	281, 634
BsrFI	RCCGGY	2 cut(s)	768, 1125
BsrI	ACTGG	3 cut(s)	447, 572, 799
BssAI	RCCGGY	2 cut(s)	768, 1125
BssECI	CCNNGG	3 cut(s)	144, 291, 462
BssMI	GATC	4 cut(s)	437, 478, 787, 936
BssT1I	CCWWGG	3 cut(s)	144, 291, 462
Bst2UI	CCWGG	2 cut(s)	104, 315
Bst4CI	ACNGT	5 cut(s)	278, 640, 668, 844, 955
Bst6I	CTCTTC	1 cut(s)	294
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	1 cut(s)	888
BstDSI	CCRYGG	1 cut(s)	291
BstF5I	GGATG	3 cut(s)	337, 369, 618
BstFNI	CGCG	1 cut(s)	696
BstHHI	GCGC	1 cut(s)	698
BstKTI	GATC	4 cut(s)	440, 481, 790, 939
BstMAI	GTCTC	4 cut(s)	281, 326, 634, 1043
BstMBI	GATC	4 cut(s)	437, 478, 787, 936
BstMCI	CGRYCG	1 cut(s)	1130
BstMWI	GCNNNNNNNGC	2 cut(s)	452, 761
BstNI	CCWGG	2 cut(s)	104, 315
BstNSI	RCATGY	1 cut(s)	1021
BstSCI	CCNGG	2 cut(s)	102, 313
BstUI	CGCG	1 cut(s)	696
BstV1I	GCAGC	5 cut(s)	355, 384, 394, 761, 764
BstV2I	GAAGAC	1 cut(s)	1020
BstX2I	RGATCY	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	478
BstZI	CGGCCG	1 cut(s)	1127
Bsu15I	ATCGAT	1 cut(s)	1107
BsuRI	GGCC	3 cut(s)	899, 1094, 1129
BsuTUI	ATCGAT	1 cut(s)	1107
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	3 cut(s)	337, 369, 618
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	6 cut(s)	283, 440, 507, 579, 645, 960
Cac8I	GCNNGC	1 cut(s)	348
CciI	TCATGA	1 cut(s)	429
CfoI	GCGC	1 cut(s)	698
Cfr10I	RCCGGY	2 cut(s)	768, 1125
Cfr13I	GGNCC	1 cut(s)	1092
ClaI	ATCGAT	1 cut(s)	1107
Csp6I	GTAC	3 cut(s)	226, 274, 692
CspAI	ACCGGT	1 cut(s)	768
CviQI	GTAC	3 cut(s)	226, 274, 692
DdeI	CTNAG	1 cut(s)	888
DpnI	GATC	4 cut(s)	439, 480, 789, 938
DpnII	GATC	4 cut(s)	437, 478, 787, 936
DraI	TTTAAA	1 cut(s)	679
EaeI	YGGCCR	2 cut(s)	897, 1127
EagI	CGGCCG	1 cut(s)	1127
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
EclXI	CGGCCG	1 cut(s)	1127
Eco130I	CCWWGG	3 cut(s)	144, 291, 462
Eco31I	GGTCTC	2 cut(s)	281, 634
Eco52I	CGGCCG	1 cut(s)	1127
Eco57I	CTGAAG	2 cut(s)	318, 1101
Eco88I	CYCGRG	1 cut(s)	1067
EcoRII	CCWGG	2 cut(s)	102, 313
EcoT14I	CCWWGG	3 cut(s)	144, 291, 462
EcoT22I	ATGCAT	1 cut(s)	778
ErhI	CCWWGG	3 cut(s)	144, 291, 462
FalI	AAGNNNNNCTT	4 cut(s)	246, 278, 1005, 1037
FaqI	GGGAC	1 cut(s)	562
FblI	GTMKAC	2 cut(s)	663, 996
Fnu4HI	GCNGC	5 cut(s)	344, 398, 408, 750, 753
FokI	GGATG	3 cut(s)	344, 376, 625
Fsp4HI	GCNGC	5 cut(s)	344, 398, 408, 750, 753
FspBI	CTAG	4 cut(s)	347, 746, 761, 1143
GlaI	GCGC	1 cut(s)	697
GluI	GCNGC	5 cut(s)	344, 398, 408, 750, 753
HaeIII	GGCC	3 cut(s)	899, 1094, 1129
HapII	CCGG	3 cut(s)	769, 1126, 1130
HhaI	GCGC	1 cut(s)	698
Hin6I	GCGC	1 cut(s)	696
HinP1I	GCGC	1 cut(s)	696
HincII	GTYRAC	2 cut(s)	906, 997
HindII	GTYRAC	2 cut(s)	906, 997
HindIII	AAGCTT	1 cut(s)	117
HinfI	GANTC	5 cut(s)	39, 53, 94, 125, 467
HpaI	GTTAAC	1 cut(s)	906
HpaII	CCGG	3 cut(s)	769, 1126, 1130
HphI	GGTGA	3 cut(s)	48, 655, 1115
Hpy166II	GTNNAC	4 cut(s)	507, 664, 906, 997
Hpy188I	TCNGA	4 cut(s)	124, 198, 915, 1026
Hpy188III	TCNNGA	3 cut(s)	50, 266, 430
Hpy8I	GTNNAC	4 cut(s)	507, 664, 906, 997
HpyAV	CCTTC	3 cut(s)	162, 252, 263
HpyCH4III	ACNGT	5 cut(s)	278, 640, 668, 844, 955
HpyCH4IV	ACGT	1 cut(s)	562
HpyCH4V	TGCA	8 cut(s)	410, 568, 599, 704, 776, 812, 859, 1102
HpyF10VI	GCNNNNNNNGC	2 cut(s)	452, 761
HpyF3I	CTNAG	1 cut(s)	888
HpySE526I	ACGT	1 cut(s)	562
HspAI	GCGC	1 cut(s)	696
KspAI	GTTAAC	1 cut(s)	906
Kzo9I	GATC	4 cut(s)	437, 478, 787, 936
LmnI	GCTCC	1 cut(s)	886
Lsp1109I	GCAGC	5 cut(s)	355, 384, 394, 761, 764
LweI	GCATC	1 cut(s)	586
MaeI	CTAG	4 cut(s)	347, 746, 761, 1143
MaeII	ACGT	1 cut(s)	562
MaeIII	GTNAC	4 cut(s)	634, 727, 974, 1121
MalI	GATC	4 cut(s)	439, 480, 789, 938
MboI	GATC	4 cut(s)	437, 478, 787, 936
MboII	GAAGA	5 cut(s)	132, 221, 311, 885, 1025
MflI	RGATCY	1 cut(s)	478
MlsI	TGGCCA	1 cut(s)	899
MluCI	AATT	5 cut(s)	212, 391, 687, 733, 867
MluNI	TGGCCA	1 cut(s)	899
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	8 cut(s)	295, 322, 354, 466, 482, 831, 925, 985
Mox20I	TGGCCA	1 cut(s)	899
Mph1103I	ATGCAT	1 cut(s)	778
MscI	TGGCCA	1 cut(s)	899
MseI	TTAA	3 cut(s)	158, 678, 905
MslI	CAYNNNNRTG	2 cut(s)	641, 771
Msp20I	TGGCCA	1 cut(s)	899
MspI	CCGG	3 cut(s)	769, 1126, 1130
MspR9I	CCNGG	2 cut(s)	104, 315
Mva1269I	GAATGC	1 cut(s)	859
MvaI	CCWGG	2 cut(s)	104, 315
MvnI	CGCG	1 cut(s)	696
MwoI	GCNNNNNNNGC	2 cut(s)	452, 761
NcoI	CCATGG	1 cut(s)	291
NdeII	GATC	4 cut(s)	437, 478, 787, 936
NheI	GCTAGC	1 cut(s)	346
NlaIV	GGNNCC	1 cut(s)	923
NmuCI	GTSAC	2 cut(s)	634, 1121
NsiI	ATGCAT	1 cut(s)	778
NspI	RCATGY	1 cut(s)	1021
OliI	CACNNNNGTG	1 cut(s)	641
PaeR7I	CTCGAG	1 cut(s)	1067
PagI	TCATGA	1 cut(s)	429
PctI	GAATGC	1 cut(s)	859
PfeI	GAWTC	5 cut(s)	39, 53, 94, 125, 467
PflFI	GACNNNGTC	1 cut(s)	1001
PflMI	CCANNNNNTGG	1 cut(s)	109
PinAI	ACCGGT	1 cut(s)	768
PkrI	GCNGC	5 cut(s)	345, 399, 409, 751, 754
Psp6I	CCWGG	2 cut(s)	102, 313
PspGI	CCWGG	2 cut(s)	102, 313
PspN4I	GGNNCC	1 cut(s)	923
PspPI	GGNCC	1 cut(s)	1092
PspXI	VCTCGAGB	1 cut(s)	1067
PsuI	RGATCY	1 cut(s)	478
PsyI	GACNNNGTC	1 cut(s)	1001
RsaI	GTAC	3 cut(s)	227, 275, 693
RsaNI	GTAC	3 cut(s)	226, 274, 692
RseI	CAYNNNNRTG	2 cut(s)	641, 771
SalI	GTCGAC	1 cut(s)	995
SaqAI	TTAA	3 cut(s)	158, 678, 905
SatI	GCNGC	5 cut(s)	344, 398, 408, 750, 753
Sau3AI	GATC	4 cut(s)	437, 478, 787, 936
Sau96I	GGNCC	1 cut(s)	1092
ScrFI	CCNGG	2 cut(s)	104, 315
SfaNI	GCATC	1 cut(s)	586
Sfr274I	CTCGAG	1 cut(s)	1067
SlaI	CTCGAG	1 cut(s)	1067
SmiMI	CAYNNNNRTG	2 cut(s)	641, 771
SmlI	CTYRAG	1 cut(s)	1067
SmoI	CTYRAG	1 cut(s)	1067
Sse9I	AATT	5 cut(s)	212, 391, 687, 733, 867
SsiI	CCGC	1 cut(s)	535
SspI	AATATT	2 cut(s)	68, 242
SspMI	CTAG	4 cut(s)	347, 746, 761, 1143
StyD4I	CCNGG	2 cut(s)	102, 313
StyI	CCWWGG	3 cut(s)	144, 291, 462
TaaI	ACNGT	5 cut(s)	278, 640, 668, 844, 955
TaiI	ACGT	1 cut(s)	565
TaqI	TCGA	4 cut(s)	996, 1068, 1086, 1107
TaqII	GACCGA	1 cut(s)	622
TasI	AATT	5 cut(s)	212, 391, 687, 733, 867
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	5 cut(s)	39, 53, 94, 125, 467
Tru1I	TTAA	3 cut(s)	158, 678, 905
Tru9I	TTAA	3 cut(s)	158, 678, 905
TscAI	CASTG	6 cut(s)	283, 447, 514, 579, 645, 960
TseFI	GTSAC	2 cut(s)	634, 1121
TseI	GCWGC	5 cut(s)	343, 397, 407, 749, 752
Tsp45I	GTSAC	2 cut(s)	634, 1121
TspDTI	ATGAA	7 cut(s)	31, 348, 353, 362, 530, 605, 699
TspRI	CASTG	6 cut(s)	283, 447, 514, 579, 645, 960
Tth111I	GACNNNGTC	1 cut(s)	1001
Van91I	CCANNNNNTGG	1 cut(s)	109
XceI	RCATGY	1 cut(s)	1021
XhoI	CTCGAG	1 cut(s)	1067
XmiI	GTMKAC	2 cut(s)	663, 996
XspI	CTAG	4 cut(s)	347, 746, 761, 1143
Zsp2I	ATGCAT	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.