Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005973

Physical Location & Seq

Genomic Coordinates Reverse (-)

29911381 .. 29914967

Gene Structure 3587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G79520.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGCGGCGACGGAGCATCGCGGCCTCAGTGGAGGAGACTACAATGTCGACCTTTTACCAATTGACCAAGACGATTCGCCACCATCTTCATGGCGTCTCAGCCTCGACACATTCCGTCTCCCTTCTTCTTCACCGTTATCATCAGGACGTCACAACGGCCGTACTCGCTTGTCTCGTTATCTCCGGACTCCGAAAAAGGAACGCAAAGTCTCAGAGTACTACAAACAGCAAGAGAAGCTTCTGGAGGGTTTCAATGAGATGGAGACAATTAACGAAACTGGTTTTGTATCTGGAGCTCCAACTGAGGAAGAACTGAAGAAGCTTGCAAAGAGCGAGAGGCTTGCAGTTCACATCTCAAACGCAGCAAACCTTGTGCTTTTTGTAGCAAAAGTTTATGCTTCTGTGGAGAGTAGGTCTATGGCTGTCATTGCTTCCACTTTGGACTCTCTCTTAGATCTCTTGTCTGGATTTATTCTATGGTTTACTGCTAATGCCATGAGAACACCTAACAATTTTCGCTATCCAATTGGAAAACGACGGATGCAACCTGTGGGAATCATTGTGTTTGCATCTGTGATGGCAACTCTTGGACTACAAGTGATACTAGAGTCAACTAGGCTACTTGTTTCCAAGAATGGTTCTCATATGAGTAGCACCGAGGAAAAATGGATGATTGGAATAATGGCTTCAGCTACAGTCGTCAAGTTTCTGCTCATGCTTTACTGCAGGAGTTTCCAGAACGAAATTGTCAGGGCCTATGCACAAGATCACCTCTTTGATGTTATCACCAATTCAGTCGGTTTAGCAACCGCTGTTTTAGCTGTAAAATTCTACTGGTGGATTGATCCCTCTGGGGCTATACTAATTGCCCTGTATACAATCAGCACATGGGCAAGAACAGTTCTAGAGAATGTCCATTCACTGATAGGACGCTCAGCACCACCAGATTTCTTGGCGAAACTAACGTTCTTGATTTGGAACCATCACGAGAAGATAAAACACATAGACACAGTGAGAGCCTACACGTTTGGGTCACACTACTTTGTGGAAGTTGACATTGTGTTGCCAGAGGACATGAGGCTGCATGAAGCTCACAACATAGGAGAAACTCTTCAGGAGAAGCTGGAGCAACTCTCTGAGGTTGAGAGAGCTTTTGTCCATATTGACTTTGAGTTTACTCATCGTCCAGAACACAAATGCAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux ZT_dimer

Protein Analysis

402

Amino Acids

45.56

Weight (kDa)

6.96

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	129 - 321	2.9e-30	Cation efflux transmembrane domain
ZT_dimer	PF16916	337 - 401	1.1e-09	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16310 AT1G16310 AT1G79520 AT1G79520 AT1G79520 AT1G79520
fragaria_vesca	FvH4_3g14550 FvH4_3g14550 FvH4_3g14550 FvH4_3g14550 FvH4_3g14550
malus_domestica	MD05G1235400.v1.1 MD10G1211700.v1.1 MD10G1211900.v1.1
prunus_persica	Prupe.4G131000_v2.0.a1 Prupe.4G131000_v2.0.a1
pyrus_communis	pycom05g21230
rosa_chinensis	RchiOBHm_Chr5g0023931
rosa_laevigata	RLG00000032750
rosa_multiflora	Rmu_sc0004175.1_g000012 Rmu_sc0005837.1_g000003
rosa_roxburghii	Rroxscaffold_1G00055290
rosa_rugosa	Rorug05G0080400
rosa_samantha	Rh5AG170800 Rh5BG167800 Rh5CG183300
rosa_wichuraiana	Rw5G015440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
AatII	GACGTC	1 cut(s)	151
AccI	GTMKAC	2 cut(s)	48, 875
AccII	CGCG	1 cut(s)	21
AccIII	TCCGGA	1 cut(s)	183
AciI	CCGC	3 cut(s)	5, 21, 810
AclI	AACGTT	1 cut(s)	965
AclWI	GGATC	1 cut(s)	839
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	827
AcuI	CTGAAG	3 cut(s)	335, 672, 1097
AcyI	GRCGYC	2 cut(s)	94, 148
AfaI	GTAC	2 cut(s)	163, 218
AflIII	ACRYGT	1 cut(s)	1023
AgsI	TTSAA	1 cut(s)	253
AluBI	AGCT	8 cut(s)	238, 296, 322, 692, 821, 1091, 1123, 1151
AluI	AGCT	8 cut(s)	238, 296, 322, 692, 821, 1091, 1123, 1151
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	6 cut(s)	30, 101, 122, 177, 214, 257
AlwI	GGATC	1 cut(s)	839
Aor13HI	TCCGGA	1 cut(s)	183
AoxI	GGCC	3 cut(s)	22, 157, 753
ApeKI	GCWGC	2 cut(s)	362, 1081
ApoI	RAATTY	1 cut(s)	827
Asp700I	GAANNNNTTC	1 cut(s)	1110
AspS9I	GGNCC	1 cut(s)	753
AsuHPI	GGTGA	3 cut(s)	123, 761, 778
BaeI	ACNNNNGTAYC	2 cut(s)	593, 626
BanII	GRGCYC	1 cut(s)	298
BauI	CACGAG	1 cut(s)	986
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	2 cut(s)	374, 1068
BccI	CCATC	4 cut(s)	91, 253, 571, 990
BceAI	ACGGC	2 cut(s)	144, 172
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BcoDI	GTCTC	6 cut(s)	30, 101, 122, 177, 214, 257
BfaI	CTAG	3 cut(s)	605, 615, 905
BfmI	CTRYAG	2 cut(s)	693, 724
BglII	AGATCT	1 cut(s)	454
BisI	GCNGC	4 cut(s)	6, 22, 363, 1082
BlpI	GCTNAGC	1 cut(s)	934
BlsI	GCNGC	4 cut(s)	7, 23, 364, 1083
BmcAI	AGTACT	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	753
BmiI	GGNNCC	1 cut(s)	980
BmsI	GCATC	3 cut(s)	25, 531, 578
BplI	GAGNNNNNCTC	2 cut(s)	1118, 1150
BpmI	CTGGAG	3 cut(s)	263, 312, 1145
Bpu1102I	GCTNAGC	1 cut(s)	934
BsaHI	GRCGYC	2 cut(s)	94, 148
BsaJI	CCNNGG	1 cut(s)	657
BsaWI	WCCGGW	1 cut(s)	183
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bse1I	ACTGG	2 cut(s)	283, 839
Bse3DI	GCAATG	1 cut(s)	426
BseAI	TCCGGA	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	657
BseGI	GGATG	2 cut(s)	546, 675
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	6 cut(s)	40, 112, 225, 294, 948, 1128
BseNI	ACTGG	2 cut(s)	283, 839
BseRI	GAGGAG	1 cut(s)	48
BseX3I	CGGCCG	1 cut(s)	157
BseXI	GCAGC	2 cut(s)	374, 1068
Bsh1236I	CGCG	1 cut(s)	21
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	3 cut(s)	24, 159, 755
BsiEI	CGRYCG	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	184
BsmAI	GTCTC	6 cut(s)	30, 101, 122, 177, 214, 257
BsmBI	CGTCTC	2 cut(s)	101, 122
BsnI	GGCC	3 cut(s)	24, 159, 755
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp13I	TCCGGA	1 cut(s)	183
Bsp143I	GATC	3 cut(s)	454, 766, 844
Bsp1720I	GCTNAGC	1 cut(s)	934
BspACI	CCGC	3 cut(s)	5, 21, 810
BspANI	GGCC	3 cut(s)	24, 159, 755
BspCNI	CTCAG	6 cut(s)	39, 111, 224, 295, 947, 1129
BspEI	TCCGGA	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	980
BspMAI	CTGCAG	1 cut(s)	728
BspPI	GGATC	1 cut(s)	839
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	2 cut(s)	283, 839
BssECI	CCNNGG	1 cut(s)	657
BssMI	GATC	3 cut(s)	454, 766, 844
BssNAI	GTATAC	1 cut(s)	876
BssNI	GRCGYC	2 cut(s)	94, 148
BssSI	CACGAG	1 cut(s)	986
Bst1107I	GTATAC	1 cut(s)	876
Bst2BI	CACGAG	1 cut(s)	986
Bst4CI	ACNGT	4 cut(s)	135, 697, 901, 1012
Bst6I	CTCTTC	1 cut(s)	1116
BstACI	GRCGYC	2 cut(s)	94, 148
BstC8I	GCNNGC	2 cut(s)	324, 342
BstDEI	CTNAG	7 cut(s)	26, 98, 211, 303, 451, 934, 1137
BstF5I	GGATG	2 cut(s)	546, 675
BstFNI	CGCG	1 cut(s)	21
BstKTI	GATC	3 cut(s)	457, 769, 847
BstMAI	GTCTC	6 cut(s)	30, 101, 122, 177, 214, 257
BstMBI	GATC	3 cut(s)	454, 766, 844
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	4 cut(s)	165, 235, 428, 818
BstSFI	CTRYAG	2 cut(s)	693, 724
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	2 cut(s)	374, 1068
BstX2I	RGATCY	1 cut(s)	454
BstXI	CCANNNNNNTGG	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	454
BstZ17I	GTATAC	1 cut(s)	876
BstZI	CGGCCG	1 cut(s)	157
BsuRI	GGCC	3 cut(s)	24, 159, 755
BtgZI	GCGATG	1 cut(s)	2
BtsCI	GGATG	2 cut(s)	546, 675
BtsIMutI	CAGTG	3 cut(s)	34, 920, 1017
Cac8I	GCNNGC	2 cut(s)	324, 342
Cfr13I	GGNCC	1 cut(s)	753
CseI	GACGC	2 cut(s)	83, 939
Csp6I	GTAC	2 cut(s)	162, 217
CviAII	CATG	6 cut(s)	90, 496, 715, 888, 1075, 1085
CviQI	GTAC	2 cut(s)	162, 217
DdeI	CTNAG	7 cut(s)	26, 98, 211, 303, 451, 934, 1137
DpnI	GATC	3 cut(s)	456, 768, 846
DpnII	GATC	3 cut(s)	454, 766, 844
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
EaeI	YGGCCR	1 cut(s)	157
EagI	CGGCCG	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	1116
EarI	CTCTTC	1 cut(s)	1116
Ecl136II	GAGCTC	1 cut(s)	296
EclXI	CGGCCG	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	298
Eco52I	CGGCCG	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	296
Eco57I	CTGAAG	3 cut(s)	335, 672, 1097
EcoICRI	GAGCTC	1 cut(s)	296
EcoO109I	RGGNCCY	1 cut(s)	753
EcoT38I	GRGCYC	1 cut(s)	298
Esp3I	CGTCTC	2 cut(s)	101, 122
FaeI	CATG	6 cut(s)	93, 499, 718, 891, 1078, 1088
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FatI	CATG	6 cut(s)	89, 495, 714, 887, 1074, 1084
FauNDI	CATATG	1 cut(s)	645
FblI	GTMKAC	2 cut(s)	48, 875
Fnu4HI	GCNGC	4 cut(s)	6, 22, 363, 1082
FokI	GGATG	2 cut(s)	553, 682
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	4 cut(s)	6, 22, 363, 1082
FspBI	CTAG	3 cut(s)	605, 615, 905
GluI	GCNGC	4 cut(s)	6, 22, 363, 1082
GsuI	CTGGAG	3 cut(s)	263, 312, 1145
HaeIII	GGCC	3 cut(s)	24, 159, 755
HapII	CCGG	1 cut(s)	184
HgaI	GACGC	2 cut(s)	83, 939
Hin1I	GRCGYC	2 cut(s)	94, 148
Hin1II	CATG	6 cut(s)	93, 499, 718, 891, 1078, 1088
HincII	GTYRAC	3 cut(s)	49, 612, 1054
HindII	GTYRAC	3 cut(s)	49, 612, 1054
HindIII	AAGCTT	2 cut(s)	236, 320
HinfI	GANTC	5 cut(s)	74, 187, 443, 555, 608
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	3 cut(s)	123, 761, 778
Hpy166II	GTNNAC	7 cut(s)	49, 349, 483, 612, 876, 1054, 1176
Hpy188I	TCNGA	3 cut(s)	192, 214, 1138
Hpy8I	GTNNAC	7 cut(s)	49, 349, 483, 612, 876, 1054, 1176
Hpy99I	CGWCG	2 cut(s)	13, 540
HpyAV	CCTTC	1 cut(s)	132
HpyCH4III	ACNGT	4 cut(s)	135, 697, 901, 1012
HpyCH4IV	ACGT	3 cut(s)	148, 965, 1025
HpyCH4V	TGCA	8 cut(s)	326, 344, 544, 569, 726, 761, 1084, 1200
HpyF10VI	GCNNNNNNNGC	4 cut(s)	165, 235, 428, 818
HpyF3I	CTNAG	7 cut(s)	26, 98, 211, 303, 451, 934, 1137
HpySE526I	ACGT	3 cut(s)	148, 965, 1025
Hsp92I	GRCGYC	2 cut(s)	94, 148
Hsp92II	CATG	6 cut(s)	93, 499, 718, 891, 1078, 1088
Kpn2I	TCCGGA	1 cut(s)	183
Kzo9I	GATC	3 cut(s)	454, 766, 844
LmnI	GCTCC	4 cut(s)	13, 293, 301, 1126
Lsp1109I	GCAGC	2 cut(s)	374, 1068
LweI	GCATC	3 cut(s)	25, 531, 578
MaeI	CTAG	3 cut(s)	605, 615, 905
MaeII	ACGT	3 cut(s)	148, 965, 1025
MaeIII	GTNAC	2 cut(s)	149, 1032
MalI	GATC	3 cut(s)	456, 768, 846
MboI	GATC	3 cut(s)	454, 766, 844
MboII	GAAGA	7 cut(s)	78, 117, 120, 320, 328, 1003, 1103
MfeI	CAATTG	2 cut(s)	60, 525
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	8 cut(s)	60, 267, 511, 525, 744, 790, 827, 864
MlyI	GAGTC	3 cut(s)	181, 437, 617
MmeI	TCCRAC	1 cut(s)	323
MroI	TCCGGA	1 cut(s)	183
MroXI	GAANNNNTTC	1 cut(s)	1110
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	1 cut(s)	88
MspA1I	CMGCKG	1 cut(s)	812
MspI	CCGG	1 cut(s)	184
MunI	CAATTG	2 cut(s)	60, 525
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	4 cut(s)	165, 235, 428, 818
NdeI	CATATG	1 cut(s)	645
NdeII	GATC	3 cut(s)	454, 766, 844
NlaIII	CATG	6 cut(s)	93, 499, 718, 891, 1078, 1088
NlaIV	GGNNCC	1 cut(s)	980
NmuCI	GTSAC	2 cut(s)	149, 1032
PcsI	WCGNNNNNNNCGW	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	1110
PfeI	GAWTC	2 cut(s)	74, 555
PkrI	GCNGC	4 cut(s)	7, 23, 364, 1083
PleI	GAGTC	3 cut(s)	181, 437, 616
PpsI	GAGTC	3 cut(s)	181, 437, 616
Psp124BI	GAGCTC	1 cut(s)	298
Psp1406I	AACGTT	1 cut(s)	965
PspN4I	GGNNCC	1 cut(s)	980
PspPI	GGNCC	1 cut(s)	753
PstI	CTGCAG	1 cut(s)	728
PsuI	RGATCY	1 cut(s)	454
RsaI	GTAC	2 cut(s)	163, 218
RsaNI	GTAC	2 cut(s)	162, 217
RseI	CAYNNNNRTG	1 cut(s)	88
SacI	GAGCTC	1 cut(s)	298
SalI	GTCGAC	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	4 cut(s)	6, 22, 363, 1082
Sau3AI	GATC	3 cut(s)	454, 766, 844
Sau96I	GGNCC	1 cut(s)	753
ScaI	AGTACT	1 cut(s)	218
SchI	GAGTC	3 cut(s)	181, 437, 617
SduI	GDGCHC	1 cut(s)	298
SfaNI	GCATC	3 cut(s)	25, 531, 578
SfcI	CTRYAG	2 cut(s)	693, 724
SmiMI	CAYNNNNRTG	1 cut(s)	88
Sse9I	AATT	8 cut(s)	60, 267, 511, 525, 744, 790, 827, 864
SsiI	CCGC	3 cut(s)	5, 21, 810
SspMI	CTAG	3 cut(s)	605, 615, 905
SstI	GAGCTC	1 cut(s)	298
TaaI	ACNGT	4 cut(s)	135, 697, 901, 1012
TaiI	ACGT	3 cut(s)	151, 968, 1028
TaqI	TCGA	2 cut(s)	48, 105
TasI	AATT	8 cut(s)	60, 267, 511, 525, 744, 790, 827, 864
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	2 cut(s)	8, 24
TfiI	GAWTC	2 cut(s)	74, 555
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	3 cut(s)	34, 927, 1017
TseFI	GTSAC	2 cut(s)	149, 1032
TseI	GCWGC	2 cut(s)	362, 1081
Tsp45I	GTSAC	2 cut(s)	149, 1032
TspDTI	ATGAA	2 cut(s)	78, 1101
TspGWI	ACGGA	3 cut(s)	26, 104, 553
TspRI	CASTG	3 cut(s)	34, 927, 1017
XapI	RAATTY	1 cut(s)	827
XbaI	TCTAGA	1 cut(s)	904
XcmI	CCANNNNNNNNNTGG	1 cut(s)	87
XmiI	GTMKAC	2 cut(s)	48, 875
XmnI	GAANNNNTTC	1 cut(s)	1110
XspI	CTAG	3 cut(s)	605, 615, 905
ZraI	GACGTC	1 cut(s)	149
ZrmI	AGTACT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.