Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005973

Physical Location & Seq

Genomic Coordinates Reverse (-)

7231313 .. 7235420

Gene Structure 4108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G131000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGACAACAGTCCGCCCAGTTCTGGAGGCCCTAGTGACAACAGAATGGAACCGCTTCTGGTGTCACAAGACGACGCCGTACCCGGAAGGTCCTCGTGGAGACTCGATGTGAAGGAGTTTCGGCTACCCCAGCAGAGCACTGCAACAACTGCAGACCATGACAACGGACGGCGTCGTTTTTCTCTCCGTCGCCTTTGCTGCACCTCCAAGAAACAATACAAGGTTGAAGAATATTACAAGCAACAAGAAAGGCTTCTTGAGGGGTTCACTGAGATGGAGACCATGACTGAAGAGGGTTGTTTGCCAGGAAGTCTTACAGAGGATCAAATGAAGCAGCTAGCAAAGAGTGAGAGGATGGCAGTACATGTATCAAACATAGCTAATTTGGTGCTTTTTGCAGCAAAAGTTTATGCTTCAATTATGAGCAGATCATTGGCAGTTATTGCCTCTACATTGGATTCCCTCTTGGATCTCTTGTCTGGCTTTATTTTGTGGTTCACTGCCAATGCCATGAAAAATCCAAACCAGTATCACTATCCTATTGGGAAGAAACGTATGCAACCAGTGGGTATCATTGTCTTTGCATCAGTAATGGCAACTCTTGGACTGCAAATATTGCTCGAGTCTGCTCGGGAACTCATCTCACAGTCACCGCCAGAAAAAATGAAATTTACGGAAGAGATGTGGATGATCGGTATCATGGCCTCAGTCACAGTAGTGAAGTTTGTTCTCATGGTCTACTGTCGCAGATTTAAAAATGAAATTGTACGGGCCTATGCACAAGACCATTTTTTCGATGTTATTACTAATTCAGTTGGTTTAGCAGCAGCAGTCTTAGCCGTCCGGTTTTTCTGGTGGATTGATCCTACTGGTGCTATTGTTATAGCAATCTATACCATTAATACATGGGCAAAGACAGTTTTGGAGAATGTGCATTCGCTAATCGGAAGAACAGCCCCGCCTGACTTCTTAGCTAAGTTAACTTATTTGATATGGAACCACCATGAAGAGATCAGGCACATTGACACAGTGAGAGCGTACACATTTGGCTCTCATTACTTTGTGGAGGTTGACATTGTCTTGCCAGAAGACATGCTTCTGAACAAAGCACACAACATTGGTGAGACTCTCCAGGAGAAGCTCGAGCAACTCCCTGAAGTCGAACGGGCTTTTGTGCATATCGATTTTGAGTTTACTCACAGGCCAGAACACAAGAACAATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux ZT_dimer

Protein Analysis

409

Amino Acids

46.59

Weight (kDa)

6.25

Isoelectric Point (pI)

58.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16310 AT1G16310 AT1G79520 AT1G79520 AT1G79520 AT1G79520
fragaria_vesca	FvH4_3g14550 FvH4_3g14550 FvH4_3g14550 FvH4_3g14550 FvH4_3g14550
malus_domestica	MD05G1235400.v1.1 MD10G1211700.v1.1 MD10G1211900.v1.1
prunus_persica	Prupe.4G131000_v2.0.a1 Prupe.4G131000_v2.0.a1
pyrus_communis	pycom05g21230
rosa_chinensis	RchiOBHm_Chr5g0023931
rosa_laevigata	RLG00000032750
rosa_multiflora	Rmu_sc0004175.1_g000012 Rmu_sc0005837.1_g000003
rosa_roxburghii	Rroxscaffold_1G00055290
rosa_rugosa	Rorug05G0080400
rosa_samantha	Rh5AG170800 Rh5BG167800 Rh5CG183300
rosa_wichuraiana	Rw5G015440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	738
AciI	CCGC	4 cut(s)	14, 53, 653, 959
AclWI	GGATC	3 cut(s)	330, 477, 857
AcsI	RAATTY	1 cut(s)	668
AcuI	CTGAAG	2 cut(s)	309, 1176
AcyI	GRCGYC	2 cut(s)	75, 172
AfaI	GTAC	4 cut(s)	81, 363, 768, 1040
AfiI	CCNNNNNNNGG	1 cut(s)	23
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	2 cut(s)	227, 417
AjnI	CCWGG	2 cut(s)	304, 1131
AleI	CACNNNNGTG	1 cut(s)	716
AluBI	AGCT	4 cut(s)	337, 380, 974, 1141
AluI	AGCT	4 cut(s)	337, 380, 974, 1141
Alw21I	GWGCWC	1 cut(s)	140
Alw26I	GTCTC	3 cut(s)	94, 272, 1118
AlwI	GGATC	3 cut(s)	330, 477, 857
Ama87I	CYCGRG	3 cut(s)	620, 630, 1142
AoxI	GGCC	4 cut(s)	28, 702, 771, 1202
ApeKI	GCWGC	5 cut(s)	198, 334, 398, 824, 827
ApoI	RAATTY	1 cut(s)	668
ArsI	GACNNNNNNTTYG	2 cut(s)	776, 808
AseI	ATTAAT	1 cut(s)	900
Asp700I	GAANNNNTTC	2 cut(s)	54, 252
AspS9I	GGNCC	3 cut(s)	29, 90, 771
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	2 cut(s)	642, 1133
AsuNHI	GCTAGC	1 cut(s)	337
AvaI	CYCGRG	3 cut(s)	620, 630, 1142
AvaII	GGWCC	1 cut(s)	90
BauI	CACGAG	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	1095
Bbv12I	GWGCWC	1 cut(s)	140
BbvI	GCAGC	5 cut(s)	185, 346, 410, 836, 839
BccI	CCATC	2 cut(s)	268, 349
BceAI	ACGGC	3 cut(s)	62, 185, 824
BciT130I	CCWGG	2 cut(s)	306, 1133
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	3 cut(s)	94, 272, 1118
BfaI	CTAG	2 cut(s)	33, 338
BfmI	CTRYAG	1 cut(s)	150
BisI	GCNGC	5 cut(s)	199, 335, 399, 825, 828
BlsI	GCNGC	5 cut(s)	200, 336, 400, 826, 829
Bme1390I	CCNGG	3 cut(s)	84, 306, 1133
Bme18I	GGWCC	1 cut(s)	90
BmeT110I	CYCGRG	3 cut(s)	620, 630, 1142
BmgT120I	GGNCC	3 cut(s)	29, 90, 771
BmiI	GGNNCC	2 cut(s)	51, 998
BmrFI	CCNGG	3 cut(s)	84, 306, 1133
BmrI	ACTGGG	1 cut(s)	12
BmsI	GCATC	1 cut(s)	593
BmtI	GCTAGC	1 cut(s)	341
BmuI	ACTGGG	1 cut(s)	12
BoxI	GACNNNNGTC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	1095
BpmI	CTGGAG	2 cut(s)	45, 1115
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	84
Bsa29I	ATCGAT	1 cut(s)	1182
BsaBI	GATNNNNATC	1 cut(s)	695
BsaHI	GRCGYC	2 cut(s)	75, 172
BsaI	GGTCTC	1 cut(s)	272
BsaWI	WCCGGW	1 cut(s)	843
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse1I	ACTGG	4 cut(s)	18, 526, 563, 874
Bse8I	GATNNNNATC	1 cut(s)	695
BseBI	CCWGG	2 cut(s)	306, 1133
BseCI	ATCGAT	1 cut(s)	1182
BseGI	GGATG	2 cut(s)	360, 693
BseJI	GATNNNNATC	1 cut(s)	695
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMII	CTCAG	2 cut(s)	261, 720
BseNI	ACTGG	4 cut(s)	18, 526, 563, 874
BseXI	GCAGC	5 cut(s)	185, 346, 410, 836, 839
BseYI	CCCAGC	1 cut(s)	129
BsgI	GTGCAG	1 cut(s)	184
BshFI	GGCC	4 cut(s)	30, 704, 773, 1204
BshVI	ATCGAT	1 cut(s)	1182
BsiHKAI	GWGCWC	1 cut(s)	140
BsiHKCI	CYCGRG	3 cut(s)	620, 630, 1142
BsiSI	CCGG	2 cut(s)	84, 844
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	3 cut(s)	94, 272, 1118
BsmI	GAATGC	1 cut(s)	934
BsnI	GGCC	4 cut(s)	30, 704, 773, 1204
Bso31I	GGTCTC	1 cut(s)	272
BsoBI	CYCGRG	3 cut(s)	620, 630, 1142
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	6 cut(s)	322, 428, 469, 690, 862, 1011
BspACI	CCGC	4 cut(s)	14, 53, 653, 959
BspANI	GGCC	4 cut(s)	30, 704, 773, 1204
BspCNI	CTCAG	2 cut(s)	262, 719
BspDI	ATCGAT	1 cut(s)	1182
BspLI	GGNNCC	2 cut(s)	51, 998
BspMAI	CTGCAG	1 cut(s)	154
BspOI	GCTAGC	1 cut(s)	341
BspPI	GGATC	3 cut(s)	330, 477, 857
BspTNI	GGTCTC	1 cut(s)	272
BsrI	ACTGG	4 cut(s)	18, 526, 563, 874
BssMI	GATC	6 cut(s)	322, 428, 469, 690, 862, 1011
BssNI	GRCGYC	2 cut(s)	75, 172
BssSI	CACGAG	1 cut(s)	94
Bst2BI	CACGAG	1 cut(s)	94
Bst2UI	CCWGG	2 cut(s)	306, 1133
Bst4CI	ACNGT	6 cut(s)	11, 648, 715, 743, 919, 1030
Bst6I	CTCTTC	3 cut(s)	285, 672, 1002
BstACI	GRCGYC	2 cut(s)	75, 172
BstAPI	GCANNNNNTGC	3 cut(s)	149, 443, 616
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	5 cut(s)	270, 706, 835, 970, 975
BstF5I	GGATG	2 cut(s)	360, 693
BstKTI	GATC	6 cut(s)	325, 431, 472, 693, 865, 1014
BstMAI	GTCTC	3 cut(s)	94, 272, 1118
BstMBI	GATC	6 cut(s)	322, 428, 469, 690, 862, 1011
BstMWI	GCNNNNNNNGC	6 cut(s)	130, 149, 198, 443, 616, 836
BstNI	CCWGG	2 cut(s)	306, 1133
BstNSI	RCATGY	2 cut(s)	368, 1096
BstPAI	GACNNNNGTC	1 cut(s)	9
BstSCI	CCNGG	3 cut(s)	82, 304, 1131
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	5 cut(s)	185, 346, 410, 836, 839
BstV2I	GAAGAC	1 cut(s)	1095
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
Bsu15I	ATCGAT	1 cut(s)	1182
BsuRI	GGCC	4 cut(s)	30, 704, 773, 1204
BsuTUI	ATCGAT	1 cut(s)	1182
BtsCI	GGATG	2 cut(s)	360, 693
BtsI	GCAGTG	2 cut(s)	138, 498
BtsIMutI	CAGTG	5 cut(s)	138, 267, 498, 570, 1035
Cac8I	GCNNGC	1 cut(s)	339
Cfr13I	GGNCC	3 cut(s)	29, 90, 771
ClaI	ATCGAT	1 cut(s)	1182
CseI	GACGC	2 cut(s)	83, 161
Csp6I	GTAC	4 cut(s)	80, 362, 767, 1039
CviAII	CATG	9 cut(s)	158, 283, 365, 511, 700, 733, 906, 1004, 1093
CviQI	GTAC	4 cut(s)	80, 362, 767, 1039
DdeI	CTNAG	5 cut(s)	270, 706, 835, 970, 975
DpnI	GATC	6 cut(s)	324, 430, 471, 692, 864, 1013
DpnII	GATC	6 cut(s)	322, 428, 469, 690, 862, 1011
DraI	TTTAAA	1 cut(s)	754
Eam1104I	CTCTTC	3 cut(s)	285, 672, 1002
EarI	CTCTTC	3 cut(s)	285, 672, 1002
Eco31I	GGTCTC	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	90
Eco57I	CTGAAG	2 cut(s)	309, 1176
Eco88I	CYCGRG	3 cut(s)	620, 630, 1142
EcoO109I	RGGNCCY	2 cut(s)	29, 90
EcoRII	CCWGG	2 cut(s)	304, 1131
FaeI	CATG	9 cut(s)	161, 286, 368, 514, 703, 736, 909, 1007, 1096
FalI	AAGNNNNNCTT	4 cut(s)	237, 269, 1080, 1112
FatI	CATG	9 cut(s)	157, 282, 364, 510, 699, 732, 905, 1003, 1092
FauI	CCCGC	1 cut(s)	966
FblI	GTMKAC	1 cut(s)	738
Fnu4HI	GCNGC	5 cut(s)	199, 335, 399, 825, 828
FokI	GGATG	2 cut(s)	367, 700
Fsp4HI	GCNGC	5 cut(s)	199, 335, 399, 825, 828
FspBI	CTAG	2 cut(s)	33, 338
GluI	GCNGC	5 cut(s)	199, 335, 399, 825, 828
GsaI	CCCAGC	1 cut(s)	133
GsuI	CTGGAG	2 cut(s)	45, 1115
HaeIII	GGCC	4 cut(s)	30, 704, 773, 1204
HapII	CCGG	2 cut(s)	84, 844
HgaI	GACGC	2 cut(s)	83, 161
Hin1I	GRCGYC	2 cut(s)	75, 172
Hin1II	CATG	9 cut(s)	161, 286, 368, 514, 703, 736, 909, 1007, 1096
HincII	GTYRAC	2 cut(s)	981, 1072
HindII	GTYRAC	2 cut(s)	981, 1072
HinfI	GANTC	4 cut(s)	102, 458, 623, 1126
HpaI	GTTAAC	1 cut(s)	981
HpaII	CCGG	2 cut(s)	84, 844
HphI	GGTGA	2 cut(s)	642, 1133
Hpy166II	GTNNAC	7 cut(s)	267, 498, 739, 981, 1041, 1072, 1194
Hpy188I	TCNGA	2 cut(s)	947, 1101
Hpy188III	TCNNGA	3 cut(s)	24, 257, 632
Hpy8I	GTNNAC	7 cut(s)	267, 498, 739, 981, 1041, 1072, 1194
Hpy99I	CGWCG	3 cut(s)	77, 177, 192
HpyAV	CCTTC	2 cut(s)	81, 106
HpyCH4III	ACNGT	6 cut(s)	11, 648, 715, 743, 919, 1030
HpyCH4IV	ACGT	1 cut(s)	553
HpyF10VI	GCNNNNNNNGC	6 cut(s)	130, 149, 198, 443, 616, 836
HpyF3I	CTNAG	5 cut(s)	270, 706, 835, 970, 975
HpySE526I	ACGT	1 cut(s)	553
Hsp92I	GRCGYC	2 cut(s)	75, 172
Hsp92II	CATG	9 cut(s)	161, 286, 368, 514, 703, 736, 909, 1007, 1096
KspAI	GTTAAC	1 cut(s)	981
Kzo9I	GATC	6 cut(s)	322, 428, 469, 690, 862, 1011
Lsp1109I	GCAGC	5 cut(s)	185, 346, 410, 836, 839
LweI	GCATC	1 cut(s)	593
MaeI	CTAG	2 cut(s)	33, 338
MaeII	ACGT	1 cut(s)	553
MaeIII	GTNAC	4 cut(s)	35, 63, 648, 709
MalI	GATC	6 cut(s)	324, 430, 471, 692, 864, 1013
MboI	GATC	6 cut(s)	322, 428, 469, 690, 862, 1011
MboII	GAAGA	7 cut(s)	239, 302, 559, 689, 960, 1019, 1100
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	5 cut(s)	382, 417, 668, 762, 808
MlyI	GAGTC	3 cut(s)	96, 632, 1120
MroXI	GAANNNNTTC	2 cut(s)	54, 252
MseI	TTAA	3 cut(s)	753, 900, 980
MslI	CAYNNNNRTG	2 cut(s)	272, 716
MspI	CCGG	2 cut(s)	84, 844
MspR9I	CCNGG	3 cut(s)	84, 306, 1133
Mva1269I	GAATGC	1 cut(s)	934
MvaI	CCWGG	2 cut(s)	306, 1133
MwoI	GCNNNNNNNGC	6 cut(s)	130, 149, 198, 443, 616, 836
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	6 cut(s)	322, 428, 469, 690, 862, 1011
NheI	GCTAGC	1 cut(s)	337
NlaIII	CATG	9 cut(s)	161, 286, 368, 514, 703, 736, 909, 1007, 1096
NlaIV	GGNNCC	2 cut(s)	51, 998
NmuCI	GTSAC	4 cut(s)	35, 63, 648, 709
NspI	RCATGY	2 cut(s)	368, 1096
OliI	CACNNNNGTG	1 cut(s)	716
PaeR7I	CTCGAG	2 cut(s)	620, 1142
PciI	ACATGT	1 cut(s)	364
PctI	GAATGC	1 cut(s)	934
PdmI	GAANNNNTTC	2 cut(s)	54, 252
PfeI	GAWTC	1 cut(s)	458
PflFI	GACNNNGTC	2 cut(s)	171, 1076
PfoI	TCCNGGA	1 cut(s)	1131
PkrI	GCNGC	5 cut(s)	200, 336, 400, 826, 829
PleI	GAGTC	3 cut(s)	96, 631, 1120
PpsI	GAGTC	3 cut(s)	96, 631, 1120
PpuMI	RGGWCCY	1 cut(s)	90
PscI	ACATGT	1 cut(s)	364
PshAI	GACNNNNGTC	1 cut(s)	9
PshBI	ATTAAT	1 cut(s)	900
Psp5II	RGGWCCY	1 cut(s)	90
Psp6I	CCWGG	2 cut(s)	304, 1131
PspFI	CCCAGC	1 cut(s)	129
PspGI	CCWGG	2 cut(s)	304, 1131
PspN4I	GGNNCC	2 cut(s)	51, 998
PspPI	GGNCC	3 cut(s)	29, 90, 771
PspPPI	RGGWCCY	1 cut(s)	90
PspXI	VCTCGAGB	2 cut(s)	620, 1142
PstI	CTGCAG	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	469
PsyI	GACNNNGTC	2 cut(s)	171, 1076
RsaI	GTAC	4 cut(s)	81, 363, 768, 1040
RsaNI	GTAC	4 cut(s)	80, 362, 767, 1039
RseI	CAYNNNNRTG	2 cut(s)	272, 716
SaqAI	TTAA	3 cut(s)	753, 900, 980
SatI	GCNGC	5 cut(s)	199, 335, 399, 825, 828
Sau3AI	GATC	6 cut(s)	322, 428, 469, 690, 862, 1011
Sau96I	GGNCC	3 cut(s)	29, 90, 771
SchI	GAGTC	3 cut(s)	96, 632, 1120
ScrFI	CCNGG	3 cut(s)	84, 306, 1133
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	9 cut(s)	92, 206, 225, 339, 382, 556, 976, 1071, 1143
SfaNI	GCATC	1 cut(s)	593
SfcI	CTRYAG	1 cut(s)	150
Sfr274I	CTCGAG	2 cut(s)	620, 1142
SinI	GGWCC	1 cut(s)	90
SlaI	CTCGAG	2 cut(s)	620, 1142
SmiMI	CAYNNNNRTG	2 cut(s)	272, 716
SmlI	CTYRAG	3 cut(s)	257, 620, 1142
SmoI	CTYRAG	3 cut(s)	257, 620, 1142
Sse9I	AATT	5 cut(s)	382, 417, 668, 762, 808
SsiI	CCGC	4 cut(s)	14, 53, 653, 959
SspI	AATATT	2 cut(s)	233, 615
SspMI	CTAG	2 cut(s)	33, 338
StyD4I	CCNGG	3 cut(s)	82, 304, 1131
TaaI	ACNGT	6 cut(s)	11, 648, 715, 743, 919, 1030
TaiI	ACGT	1 cut(s)	556
TaqI	TCGA	6 cut(s)	105, 621, 795, 1143, 1161, 1182
TasI	AATT	5 cut(s)	382, 417, 668, 762, 808
TatI	WGTACW	1 cut(s)	361
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	3 cut(s)	753, 900, 980
Tru9I	TTAA	3 cut(s)	753, 900, 980
TscAI	CASTG	5 cut(s)	145, 274, 505, 570, 1035
TseFI	GTSAC	4 cut(s)	35, 63, 648, 709
TseI	GCWGC	5 cut(s)	198, 334, 398, 824, 827
Tsp45I	GTSAC	4 cut(s)	35, 63, 648, 709
TspDTI	ATGAA	5 cut(s)	344, 527, 680, 774, 1020
TspGWI	ACGGA	3 cut(s)	176, 180, 689
TspRI	CASTG	5 cut(s)	145, 274, 505, 570, 1035
Tth111I	GACNNNGTC	2 cut(s)	171, 1076
VpaK11BI	GGWCC	1 cut(s)	90
VspI	ATTAAT	1 cut(s)	900
XapI	RAATTY	1 cut(s)	668
XceI	RCATGY	2 cut(s)	368, 1096
XhoI	CTCGAG	2 cut(s)	620, 1142
XmiI	GTMKAC	1 cut(s)	738
XmnI	GAANNNNTTC	2 cut(s)	54, 252
XspI	CTAG	2 cut(s)	33, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.