FvH4_3g14550

Metal tolerance protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
8974199 .. 8978578
4380 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g14550.t5

Sequence Viewer

Length: 1209 bp
ATGGAGACGAGTCCGCACTCCAACTCCGGTGGAGACTGCCGGAGGGAACCTCTTCTCGACTCGGAAAACGGCGTCGCATCAAGCAGGTCTTGGAGGCTTGATATCAATGAGTTTCGGATCCCGGAACAGAACAACGGCGAAGGTGAAAAAGGGTGTCGACCCTTTGGTGGTATCCGTCGTCTATACACACCCAGGAAAAATTACAGAGTTGAGCAATATTACAAGCAACAAGGAAGGCTTCTTGAAGGGTACAGTGAGATGGAGACCATGACTGAAGAGGGTTGGTTGCCAGGAAGTCTCACAGAGGATGAAATGAAGCATCTAGCCAAGAGTGAGAGGATGGCTGTTCATATATCAAATATAACTAATTTGGTGCTCTTTGCTGCAAAAGTTTATGCCTCTATCATGAGCAGATCACTGGCAGTTATTGCCTCCACCTTGGATTCCCTCTTGGATCTCTTGTCTGGTTTTATTTTGTGGTTCACTGCCCATGCCATGAGAAAGCCAAACCGCTTAAATTACCCTATTGGAAAGAAACGTATGCAACCAGTGGGTATCATTGTCTTTGCGTCTGTTATGGCAACTCTTGGACTGCAAATATTGCTTGAGTCTGGTCGGGAACTGGTCTCAAAGTCCCGATCGGAAATGGGTGATGCACAGGAGAAGTGGATGATTGCCATCATGGTCAGTGTCACAGTTGTGAAGTTTATACTCATGATCTATTGTCGTAGATTCAAGAATGAAATTGTACGGGCCTATGCACAAGACCACTTCTTTGATGTCATTACCAATTCAGTTGGTCTAGCAGCAGCAGTCCTAGCTCACCGGTATGCATGGTGGATTGATCCTACAGGTGCTATTGTGATTGCACTTTATACCATCAATACATGGACAAGGACAGTCCTGGAGAACGTGCGAACGCTAATTGGAAGAACAGCTCCACCTGAGTTTTTGGCCAAGTTGACCTATCTGATATGGAATCACCACGAGGAGATCAAGCACATTGACACAGTGAGAGCATACACATTTGGTAACTACTACTTTGTCGAGGTCGACATAGTCTTGCCAGAAGACATGCTTCTGAACAAAGCTCATAACATTGGCGAGACACTCCAGGAGAAGCTCGAGCAACTTGCTGAAGTCGAACGGGCCTTTGTGCACATAGATTTTGAGTTCAGTCACCGGCCGGAACACAAAGCTACCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

403

Amino Acids

46.06

Weight (kDa)

6.52

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_efflux PF01545 117 - 309 1.4e-32 Cation efflux transmembrane domain
ZT_dimer PF16916 316 - 389 5.1e-09 Cation efflux protein, cytoplasmic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 75
AccI GTMKAC 2 cut(s) 157, 1053
AciI CCGC 2 cut(s) 14, 511
AclWI GGATC 4 cut(s) 112, 125, 462, 839
AcoI YGGCCR 2 cut(s) 954, 1184
AcuI CTGAAG 2 cut(s) 294, 1158
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 2 cut(s) 251, 750
AfiI CCNNNNNNNGG 1 cut(s) 167
AgeI ACCGGT 1 cut(s) 825
AgsI TTSAA 2 cut(s) 245, 736
AjnI CCWGG 4 cut(s) 191, 289, 903, 1113
AleI CACNNNNGTG 1 cut(s) 698
AluBI AGCT 5 cut(s) 821, 938, 1091, 1123, 1199
AluI AGCT 5 cut(s) 821, 938, 1091, 1123, 1199
Alw21I GWGCWC 2 cut(s) 378, 1161
Alw26I GTCTC 5 cut(s) 27, 257, 302, 631, 1100
Alw44I GTGCAC 1 cut(s) 1157
AlwI GGATC 4 cut(s) 112, 125, 462, 839
Ama87I CYCGRG 1 cut(s) 1124
AoxI GGCC 4 cut(s) 753, 954, 1149, 1184
ApaLI GTGCAC 1 cut(s) 1157
ApeKI GCWGC 3 cut(s) 383, 806, 809
ArsI GACNNNNNNTTYG 2 cut(s) 758, 790
AsiGI ACCGGT 1 cut(s) 825
Asp700I GAANNNNTTC 1 cut(s) 51
AspS9I GGNCC 2 cut(s) 753, 1149
AsuC2I CCSGG 1 cut(s) 122
AsuHPI GGTGA 5 cut(s) 155, 662, 815, 974, 1172
AvaI CYCGRG 1 cut(s) 1124
BaeGI GKGCMC 1 cut(s) 1161
BalI TGGCCA 1 cut(s) 956
BamHI GGATCC 1 cut(s) 117
BauI CACGAG 1 cut(s) 986
BbsI GAAGAC 1 cut(s) 1077
Bbv12I GWGCWC 2 cut(s) 378, 1161
BbvI GCAGC 3 cut(s) 370, 818, 821
BccI CCATC 4 cut(s) 253, 334, 686, 887
BceAI ACGGC 2 cut(s) 85, 151
BcgI CGANNNNNNTGC 2 cut(s) 1115, 1149
BciT130I CCWGG 4 cut(s) 193, 291, 905, 1115
BciVI GTATCC 1 cut(s) 182
BcnI CCSGG 1 cut(s) 122
BcoDI GTCTC 5 cut(s) 27, 257, 302, 631, 1100
BfaI CTAG 3 cut(s) 323, 803, 818
BfmI CTRYAG 1 cut(s) 849
BfuAI ACCTGC 1 cut(s) 75
BfuI GTATCC 1 cut(s) 182
BisI GCNGC 3 cut(s) 384, 807, 810
BlsI GCNGC 3 cut(s) 385, 808, 811
Bme1390I CCNGG 5 cut(s) 122, 193, 291, 905, 1115
BmeT110I CYCGRG 1 cut(s) 1124
BmgT120I GGNCC 2 cut(s) 753, 1149
BmiI GGNNCC 2 cut(s) 48, 119
BmrFI CCNGG 5 cut(s) 122, 193, 291, 905, 1115
BmsI GCATC 3 cut(s) 86, 328, 643
BpiI GAAGAC 1 cut(s) 1077
BplI GAGNNNNNCTC 2 cut(s) 34, 66
BpmI CTGGAG 2 cut(s) 926, 1097
BpuEI CTTGAG 1 cut(s) 626
BpuMI CCSGG 1 cut(s) 122
BsaBI GATNNNNATC 1 cut(s) 677
BsaHI GRCGYC 1 cut(s) 72
BsaI GGTCTC 2 cut(s) 257, 631
BsaJI CCNNGG 2 cut(s) 191, 438
BsaWI WCCGGW 2 cut(s) 26, 825
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse118I RCCGGY 2 cut(s) 825, 1182
Bse1I ACTGG 3 cut(s) 423, 548, 627
Bse8I GATNNNNATC 1 cut(s) 677
BseBI CCWGG 4 cut(s) 193, 291, 905, 1115
BseDI CCNNGG 2 cut(s) 191, 438
BseGI GGATG 3 cut(s) 313, 345, 675
BseJI GATNNNNATC 1 cut(s) 677
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 936
BseNI ACTGG 3 cut(s) 423, 548, 627
BseRI GAGGAG 1 cut(s) 1004
BseSI GKGCMC 1 cut(s) 1161
BseX3I CGGCCG 1 cut(s) 1184
BseXI GCAGC 3 cut(s) 370, 818, 821
Bsh1285I CGRYCG 2 cut(s) 641, 1187
BshFI GGCC 4 cut(s) 755, 956, 1151, 1186
BshTI ACCGGT 1 cut(s) 825
BsiEI CGRYCG 2 cut(s) 641, 1187
BsiHKAI GWGCWC 2 cut(s) 378, 1161
BsiHKCI CYCGRG 1 cut(s) 1124
BsiSI CCGG 6 cut(s) 27, 40, 122, 826, 1183, 1187
BslFI GGGAC 1 cut(s) 619
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 5 cut(s) 27, 257, 302, 631, 1100
BsmFI GGGAC 1 cut(s) 619
BsnI GGCC 4 cut(s) 755, 956, 1151, 1186
Bso31I GGTCTC 2 cut(s) 257, 631
BsoBI CYCGRG 1 cut(s) 1124
Bsp1286I GDGCHC 2 cut(s) 378, 1161
Bsp143I GATC 7 cut(s) 117, 413, 454, 638, 717, 844, 993
BspACI CCGC 2 cut(s) 14, 511
BspANI GGCC 4 cut(s) 755, 956, 1151, 1186
BspCNI CTCAG 1 cut(s) 937
BspHI TCATGA 2 cut(s) 405, 714
BspLI GGNNCC 2 cut(s) 48, 119
BspMI ACCTGC 1 cut(s) 75
BspPI GGATC 4 cut(s) 112, 125, 462, 839
BspTNI GGTCTC 2 cut(s) 257, 631
BsrFI RCCGGY 2 cut(s) 825, 1182
BsrI ACTGG 3 cut(s) 423, 548, 627
BssAI RCCGGY 2 cut(s) 825, 1182
BssECI CCNNGG 2 cut(s) 191, 438
BssMI GATC 7 cut(s) 117, 413, 454, 638, 717, 844, 993
BssNI GRCGYC 1 cut(s) 72
BssSI CACGAG 1 cut(s) 986
BssT1I CCWWGG 1 cut(s) 438
Bst2BI CACGAG 1 cut(s) 986
Bst2UI CCWGG 4 cut(s) 193, 291, 905, 1115
Bst4CI ACNGT 4 cut(s) 254, 697, 901, 1012
Bst6I CTCTTC 2 cut(s) 57, 270
BstACI GRCGYC 1 cut(s) 72
BstAPI GCANNNNNTGC 2 cut(s) 428, 601
BstDEI CTNAG 1 cut(s) 945
BstF5I GGATG 3 cut(s) 313, 345, 675
BstKTI GATC 7 cut(s) 120, 416, 457, 641, 720, 847, 996
BstMAI GTCTC 5 cut(s) 27, 257, 302, 631, 1100
BstMBI GATC 7 cut(s) 117, 413, 454, 638, 717, 844, 993
BstMCI CGRYCG 2 cut(s) 641, 1187
BstMWI GCNNNNNNNGC 3 cut(s) 428, 601, 818
BstNI CCWGG 4 cut(s) 193, 291, 905, 1115
BstNSI RCATGY 1 cut(s) 1078
BstSCI CCNGG 5 cut(s) 120, 191, 289, 903, 1113
BstSFI CTRYAG 1 cut(s) 849
BstSLI GKGCMC 1 cut(s) 1161
BstV1I GCAGC 3 cut(s) 370, 818, 821
BstV2I GAAGAC 1 cut(s) 1077
BstX2I RGATCY 2 cut(s) 117, 454
BstYI RGATCY 2 cut(s) 117, 454
BstZI CGGCCG 1 cut(s) 1184
BsuI GTATCC 1 cut(s) 182
BsuRI GGCC 4 cut(s) 755, 956, 1151, 1186
BtsCI GGATG 3 cut(s) 313, 345, 675
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 6 cut(s) 259, 416, 483, 555, 694, 1017
BveI ACCTGC 1 cut(s) 75
CciI TCATGA 2 cut(s) 405, 714
Cfr10I RCCGGY 2 cut(s) 825, 1182
Cfr13I GGNCC 2 cut(s) 753, 1149
CseI GACGC 2 cut(s) 61, 558
Csp6I GTAC 2 cut(s) 250, 749
CspAI ACCGGT 1 cut(s) 825
CspCI CAANNNNNGTGG 2 cut(s) 10, 45
CviAII CATG 9 cut(s) 268, 406, 491, 496, 682, 715, 834, 888, 1075
CviQI GTAC 2 cut(s) 250, 749
DdeI CTNAG 1 cut(s) 945
DpnI GATC 7 cut(s) 119, 415, 456, 640, 719, 846, 995
DpnII GATC 7 cut(s) 117, 413, 454, 638, 717, 844, 993
EaeI YGGCCR 2 cut(s) 954, 1184
EagI CGGCCG 1 cut(s) 1184
Eam1104I CTCTTC 2 cut(s) 57, 270
EarI CTCTTC 2 cut(s) 57, 270
EclXI CGGCCG 1 cut(s) 1184
Eco130I CCWWGG 1 cut(s) 438
Eco31I GGTCTC 2 cut(s) 257, 631
Eco32I GATATC 1 cut(s) 103
Eco52I CGGCCG 1 cut(s) 1184
Eco57I CTGAAG 2 cut(s) 294, 1158
Eco88I CYCGRG 1 cut(s) 1124
EcoRII CCWGG 4 cut(s) 191, 289, 903, 1113
EcoRV GATATC 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 438
EcoT22I ATGCAT 1 cut(s) 835
ErhI CCWWGG 1 cut(s) 438
FaeI CATG 9 cut(s) 271, 409, 494, 499, 685, 718, 837, 891, 1078
FalI AAGNNNNNCTT 6 cut(s) 73, 105, 222, 254, 1062, 1094
FaqI GGGAC 1 cut(s) 619
FatI CATG 9 cut(s) 267, 405, 490, 495, 681, 714, 833, 887, 1074
FblI GTMKAC 2 cut(s) 157, 1053
Fnu4HI GCNGC 3 cut(s) 384, 807, 810
FokI GGATG 3 cut(s) 320, 352, 682
Fsp4HI GCNGC 3 cut(s) 384, 807, 810
FspBI CTAG 3 cut(s) 323, 803, 818
GluI GCNGC 3 cut(s) 384, 807, 810
GsuI CTGGAG 2 cut(s) 926, 1097
HaeIII GGCC 4 cut(s) 755, 956, 1151, 1186
HapII CCGG 6 cut(s) 27, 40, 122, 826, 1183, 1187
HgaI GACGC 2 cut(s) 61, 558
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 9 cut(s) 271, 409, 494, 499, 685, 718, 837, 891, 1078
HincII GTYRAC 3 cut(s) 158, 963, 1054
HindII GTYRAC 3 cut(s) 158, 963, 1054
HinfI GANTC 6 cut(s) 10, 59, 443, 608, 732, 979
HpaII CCGG 6 cut(s) 27, 40, 122, 826, 1183, 1187
HphI GGTGA 5 cut(s) 155, 662, 815, 974, 1172
Hpy166II GTNNAC 5 cut(s) 158, 483, 963, 1054, 1159
Hpy188I TCNGA 5 cut(s) 64, 117, 643, 972, 1083
Hpy188III TCNNGA 7 cut(s) 56, 242, 406, 617, 636, 715, 736
Hpy8I GTNNAC 5 cut(s) 158, 483, 963, 1054, 1159
Hpy99I CGWCG 2 cut(s) 77, 180
HpyAV CCTTC 3 cut(s) 134, 228, 239
HpyCH4III ACNGT 4 cut(s) 254, 697, 901, 1012
HpyCH4IV ACGT 2 cut(s) 538, 912
HpyCH4V TGCA 8 cut(s) 386, 544, 595, 656, 761, 833, 869, 1159
HpyF10VI GCNNNNNNNGC 3 cut(s) 428, 601, 818
HpyF3I CTNAG 1 cut(s) 945
HpySE526I ACGT 2 cut(s) 538, 912
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 9 cut(s) 271, 409, 494, 499, 685, 718, 837, 891, 1078
Kzo9I GATC 7 cut(s) 117, 413, 454, 638, 717, 844, 993
LmnI GCTCC 1 cut(s) 943
Lsp1109I GCAGC 3 cut(s) 370, 818, 821
LweI GCATC 3 cut(s) 86, 328, 643
MaeI CTAG 3 cut(s) 323, 803, 818
MaeII ACGT 2 cut(s) 538, 912
MaeIII GTNAC 3 cut(s) 691, 1031, 1178
MalI GATC 7 cut(s) 119, 415, 456, 640, 719, 846, 995
MboI GATC 7 cut(s) 117, 413, 454, 638, 717, 844, 993
MboII GAAGA 4 cut(s) 44, 287, 942, 1082
MflI RGATCY 2 cut(s) 117, 454
MhlI GDGCHC 2 cut(s) 378, 1161
MlsI TGGCCA 1 cut(s) 956
MluCI AATT 6 cut(s) 199, 367, 517, 744, 790, 924
MluNI TGGCCA 1 cut(s) 956
MlyI GAGTC 3 cut(s) 19, 53, 617
MmeI TCCRAC 1 cut(s) 45
Mox20I TGGCCA 1 cut(s) 956
Mph1103I ATGCAT 1 cut(s) 835
MroXI GAANNNNTTC 1 cut(s) 51
MscI TGGCCA 1 cut(s) 956
MseI TTAA 1 cut(s) 515
MslI CAYNNNNRTG 2 cut(s) 698, 828
Msp20I TGGCCA 1 cut(s) 956
MspI CCGG 6 cut(s) 27, 40, 122, 826, 1183, 1187
MspR9I CCNGG 5 cut(s) 122, 193, 291, 905, 1115
MvaI CCWGG 4 cut(s) 193, 291, 905, 1115
MwoI GCNNNNNNNGC 3 cut(s) 428, 601, 818
NciI CCSGG 1 cut(s) 122
NdeII GATC 7 cut(s) 117, 413, 454, 638, 717, 844, 993
NlaIII CATG 9 cut(s) 271, 409, 494, 499, 685, 718, 837, 891, 1078
NlaIV GGNNCC 2 cut(s) 48, 119
NmuCI GTSAC 2 cut(s) 691, 1178
NsiI ATGCAT 1 cut(s) 835
NspI RCATGY 1 cut(s) 1078
OliI CACNNNNGTG 1 cut(s) 698
PaeR7I CTCGAG 1 cut(s) 1124
PagI TCATGA 2 cut(s) 405, 714
PdmI GAANNNNTTC 1 cut(s) 51
PfeI GAWTC 3 cut(s) 443, 732, 979
PflFI GACNNNGTC 1 cut(s) 1058
PfoI TCCNGGA 3 cut(s) 120, 903, 1113
PinAI ACCGGT 1 cut(s) 825
PkrI GCNGC 3 cut(s) 385, 808, 811
Ple19I CGATCG 1 cut(s) 641
PleI GAGTC 3 cut(s) 18, 53, 616
PpsI GAGTC 3 cut(s) 18, 53, 616
Psp6I CCWGG 4 cut(s) 191, 289, 903, 1113
PspGI CCWGG 4 cut(s) 191, 289, 903, 1113
PspN4I GGNNCC 2 cut(s) 48, 119
PspPI GGNCC 2 cut(s) 753, 1149
PspXI VCTCGAGB 1 cut(s) 1124
PsuI RGATCY 2 cut(s) 117, 454
PsyI GACNNNGTC 1 cut(s) 1058
PvuI CGATCG 1 cut(s) 641
RsaI GTAC 2 cut(s) 251, 750
RsaNI GTAC 2 cut(s) 250, 749
RseI CAYNNNNRTG 2 cut(s) 698, 828
SalI GTCGAC 2 cut(s) 156, 1052
SaqAI TTAA 1 cut(s) 515
SatI GCNGC 3 cut(s) 384, 807, 810
Sau3AI GATC 7 cut(s) 117, 413, 454, 638, 717, 844, 993
Sau96I GGNCC 2 cut(s) 753, 1149
SchI GAGTC 3 cut(s) 19, 53, 617
ScrFI CCNGG 5 cut(s) 122, 193, 291, 905, 1115
SduI GDGCHC 2 cut(s) 378, 1161
SfaNI GCATC 3 cut(s) 86, 328, 643
SfcI CTRYAG 1 cut(s) 849
Sfr274I CTCGAG 1 cut(s) 1124
SlaI CTCGAG 1 cut(s) 1124
SmiMI CAYNNNNRTG 2 cut(s) 698, 828
SmlI CTYRAG 2 cut(s) 605, 1124
SmoI CTYRAG 2 cut(s) 605, 1124
Sse9I AATT 6 cut(s) 199, 367, 517, 744, 790, 924
SsiI CCGC 2 cut(s) 14, 511
SspI AATATT 2 cut(s) 218, 600
SspMI CTAG 3 cut(s) 323, 803, 818
StyD4I CCNGG 5 cut(s) 120, 191, 289, 903, 1113
StyI CCWWGG 1 cut(s) 438
TaaI ACNGT 4 cut(s) 254, 697, 901, 1012
TaiI ACGT 2 cut(s) 541, 915
TaqI TCGA 6 cut(s) 57, 157, 1047, 1053, 1125, 1143
TasI AATT 6 cut(s) 199, 367, 517, 744, 790, 924
TfiI GAWTC 3 cut(s) 443, 732, 979
Tru1I TTAA 1 cut(s) 515
Tru9I TTAA 1 cut(s) 515
TscAI CASTG 6 cut(s) 259, 423, 490, 555, 694, 1017
TseFI GTSAC 2 cut(s) 691, 1178
TseI GCWGC 3 cut(s) 383, 806, 809
Tsp45I GTSAC 2 cut(s) 691, 1178
TspDTI ATGAA 4 cut(s) 324, 329, 338, 756
TspGWI ACGGA 1 cut(s) 164
TspRI CASTG 6 cut(s) 259, 423, 490, 555, 694, 1017
Tth111I GACNNNGTC 1 cut(s) 1058
VneI GTGCAC 1 cut(s) 1157
XceI RCATGY 1 cut(s) 1078
XhoI CTCGAG 1 cut(s) 1124
XmiI GTMKAC 2 cut(s) 157, 1053
XmnI GAANNNNTTC 1 cut(s) 51
XspI CTAG 3 cut(s) 323, 803, 818
Zsp2I ATGCAT 1 cut(s) 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.