Rroxscaffold_1G00055290

Metal tolerance protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
76745524 .. 76748888
3365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00055290.1

Sequence Viewer

Length: 1077 bp
ATGGAGAAGAGTCCGCACTCGAATTCCGGTGGAGACTGCAGGAGGGAACCGCTTCTCGAGTCGGAGAACGGCGTCGCGCCAAGCAGGTCTTGGAGGCTTAACATCAATGAGTTTCGGATTCCGGAACAGAACGAGGGTGAAGGGAAAAAGTACAGAGTTGAGCAATATTACAAGCAACAAGAAAGGCTTCTTGAAGGGTACAGTGAGATGGAGACCATGGCTGAAGAGGGTTGGTTGCCAGGAAGTCTCACAGAGGATGAAATGAAGCAGCTAGCTAAGAGTGAGAGGATGGCAGTTCATATATCAAATGTAGCTAATTTGCTGCTCTTTGCTGCAAAAGTTTATGCTTCAATCATGAGCAGATCACTGGCAGTTATTGCCTCTACCTTGGATTCCCTCTTGGATCTCTTGTCTGGCTTTATTTTGTGGTTCACTGCCAATGCCATGAGAAAGCCAAACCGCTTTCATTATCCTATTGGAAAGAAACGTATGCAACCAGTGTCCCCAGCAAAAATGGATGATGGACAGGAGAAGTGGATGATTGCCATCATGGTCTCGGTCACGGTAGTGAAGTTTCTGCTCATGGTCTACTGTCGTAGATTTAAAAATGAAATTGTACAGGCCTATGCACAAGACCACTTCTTCGATGTCATTACTAATTCAGTTGGTCTAGCAGCAGCAGTCCTAGCCCACCGGTATGCATGGTGGATTGATCCTGCTGGTGCTATTGTGATTGCACTTTACACCATTAATACATGGACAAGGACAGTCTTGGAGAATGTGCGTTCACTAATTGGAAGAACAGCTCCACCTGAGTTTTTGGCCAAGTTGACCTATCTGATATGGAACCACCATGAGGAGATCAAGCACATTGATACAGTGAGAGCATACACATTTGGAAACTATTACTTTGTGGAGGTCGACATAGTCTTGCCAGAAGACATGCTTCTGAACAAAGCACATAACATTGGCGAGACGCTCCAAGAGAAGCTCGAGCAACTTGCTGAAGTCGAACGGGCCTTTGTGCATATAGATTTTGAGTTTAGTCACCGGCCGGAACACAAAACTAGCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

358

Amino Acids

41.23

Weight (kDa)

6.09

Isoelectric Point (pI)

51.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_efflux PF01545 100 - 167 6.7e-13 Cation efflux transmembrane domain
Cation_efflux PF01545 178 - 265 8.7e-10 Cation efflux transmembrane domain
ZT_dimer PF16916 272 - 345 4.2e-09 Cation efflux protein, cytoplasmic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 75
AccI GTMKAC 2 cut(s) 588, 921
AccII CGCG 1 cut(s) 77
AccIII TCCGGA 1 cut(s) 121
AciI CCGC 3 cut(s) 14, 50, 460
AclWI GGATC 2 cut(s) 411, 707
AcoI YGGCCR 2 cut(s) 822, 1052
AcsI RAATTY 1 cut(s) 22
AcuI CTGAAG 2 cut(s) 243, 1026
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 3 cut(s) 152, 200, 618
AfiI CCNNNNNNNGG 1 cut(s) 856
AgeI ACCGGT 1 cut(s) 693
AgsI TTSAA 2 cut(s) 194, 351
AjnI CCWGG 1 cut(s) 238
AleI CACNNNNGTG 1 cut(s) 566
AluBI AGCT 5 cut(s) 271, 275, 314, 806, 991
AluI AGCT 5 cut(s) 271, 275, 314, 806, 991
Alw26I GTCTC 5 cut(s) 27, 206, 251, 559, 968
AlwI GGATC 2 cut(s) 411, 707
Ama87I CYCGRG 2 cut(s) 56, 992
Aor13HI TCCGGA 1 cut(s) 121
AoxI GGCC 4 cut(s) 621, 822, 1017, 1052
ApeKI GCWGC 5 cut(s) 268, 322, 332, 674, 677
ApoI RAATTY 1 cut(s) 22
ArsI GACNNNNNNTTYG 2 cut(s) 626, 658
AseI ATTAAT 1 cut(s) 750
AsiGI ACCGGT 1 cut(s) 693
Asp700I GAANNNNTTC 2 cut(s) 51, 186
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 1017
AsuHPI GGTGA 2 cut(s) 149, 1040
AsuNHI GCTAGC 1 cut(s) 271
AvaI CYCGRG 2 cut(s) 56, 992
BalI TGGCCA 1 cut(s) 824
BbsI GAAGAC 1 cut(s) 945
BbvI GCAGC 5 cut(s) 280, 309, 319, 686, 689
BccI CCATC 4 cut(s) 202, 283, 515, 554
BceAI ACGGC 1 cut(s) 85
BcgI CGANNNNNNTGC 2 cut(s) 983, 1017
BciT130I CCWGG 1 cut(s) 240
BcoDI GTCTC 5 cut(s) 27, 206, 251, 559, 968
BfaI CTAG 4 cut(s) 272, 671, 686, 1068
BfmI CTRYAG 1 cut(s) 37
BfuAI ACCTGC 1 cut(s) 75
BisI GCNGC 5 cut(s) 269, 323, 333, 675, 678
BlsI GCNGC 5 cut(s) 270, 324, 334, 676, 679
Bme1390I CCNGG 1 cut(s) 240
BmeT110I CYCGRG 2 cut(s) 56, 992
BmgT120I GGNCC 1 cut(s) 1017
BmiI GGNNCC 2 cut(s) 48, 848
BmrFI CCNGG 1 cut(s) 240
BmtI GCTAGC 1 cut(s) 275
BpiI GAAGAC 1 cut(s) 945
BsaBI GATNNNNATC 1 cut(s) 545
BsaHI GRCGYC 1 cut(s) 72
BsaI GGTCTC 2 cut(s) 206, 559
BsaJI CCNNGG 2 cut(s) 216, 387
BsaWI WCCGGW 3 cut(s) 26, 121, 693
Bsc4I CCNNNNNNNGG 1 cut(s) 856
Bse118I RCCGGY 2 cut(s) 693, 1050
Bse1I ACTGG 2 cut(s) 372, 497
Bse8I GATNNNNATC 1 cut(s) 545
BseAI TCCGGA 1 cut(s) 121
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 2 cut(s) 216, 387
BseGI GGATG 4 cut(s) 262, 294, 523, 543
BseJI GATNNNNATC 1 cut(s) 545
BseLI CCNNNNNNNGG 1 cut(s) 856
BseMII CTCAG 1 cut(s) 804
BseNI ACTGG 2 cut(s) 372, 497
BseRI GAGGAG 1 cut(s) 872
BseX3I CGGCCG 1 cut(s) 1052
BseXI GCAGC 5 cut(s) 280, 309, 319, 686, 689
BseYI CCCAGC 1 cut(s) 505
Bsh1236I CGCG 1 cut(s) 77
Bsh1285I CGRYCG 1 cut(s) 1055
BshFI GGCC 4 cut(s) 623, 824, 1019, 1054
BshTI ACCGGT 1 cut(s) 693
BsiEI CGRYCG 1 cut(s) 1055
BsiHKCI CYCGRG 2 cut(s) 56, 992
BsiSI CCGG 5 cut(s) 27, 122, 694, 1051, 1055
BslFI GGGAC 1 cut(s) 487
BslI CCNNNNNNNGG 1 cut(s) 856
BsmAI GTCTC 5 cut(s) 27, 206, 251, 559, 968
BsmBI CGTCTC 1 cut(s) 968
BsmFI GGGAC 1 cut(s) 487
BsnI GGCC 4 cut(s) 623, 824, 1019, 1054
Bso31I GGTCTC 2 cut(s) 206, 559
BsoBI CYCGRG 2 cut(s) 56, 992
Bsp13I TCCGGA 1 cut(s) 121
Bsp1407I TGTACA 1 cut(s) 616
Bsp143I GATC 4 cut(s) 362, 403, 712, 861
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 3 cut(s) 14, 50, 460
BspANI GGCC 4 cut(s) 623, 824, 1019, 1054
BspCNI CTCAG 1 cut(s) 805
BspEI TCCGGA 1 cut(s) 121
BspFNI CGCG 1 cut(s) 77
BspHI TCATGA 1 cut(s) 354
BspLI GGNNCC 2 cut(s) 48, 848
BspMAI CTGCAG 1 cut(s) 41
BspMI ACCTGC 1 cut(s) 75
BspOI GCTAGC 1 cut(s) 275
BspPI GGATC 2 cut(s) 411, 707
BspTNI GGTCTC 2 cut(s) 206, 559
BsrFI RCCGGY 2 cut(s) 693, 1050
BsrGI TGTACA 1 cut(s) 616
BsrI ACTGG 2 cut(s) 372, 497
BssAI RCCGGY 2 cut(s) 693, 1050
BssECI CCNNGG 2 cut(s) 216, 387
BssMI GATC 4 cut(s) 362, 403, 712, 861
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 2 cut(s) 216, 387
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 5 cut(s) 203, 565, 593, 769, 880
Bst6I CTCTTC 2 cut(s) 2, 219
BstACI GRCGYC 1 cut(s) 72
BstAPI GCANNNNNTGC 1 cut(s) 377
BstAUI TGTACA 1 cut(s) 616
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 2 cut(s) 276, 813
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 4 cut(s) 262, 294, 523, 543
BstFNI CGCG 1 cut(s) 77
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 4 cut(s) 365, 406, 715, 864
BstMAI GTCTC 5 cut(s) 27, 206, 251, 559, 968
BstMBI GATC 4 cut(s) 362, 403, 712, 861
BstMCI CGRYCG 1 cut(s) 1055
BstMWI GCNNNNNNNGC 2 cut(s) 377, 686
BstNI CCWGG 1 cut(s) 240
BstNSI RCATGY 1 cut(s) 946
BstSCI CCNGG 1 cut(s) 238
BstSFI CTRYAG 1 cut(s) 37
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 5 cut(s) 280, 309, 319, 686, 689
BstV2I GAAGAC 1 cut(s) 945
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
BstZI CGGCCG 1 cut(s) 1052
BsuRI GGCC 4 cut(s) 623, 824, 1019, 1054
BtgI CCRYGG 1 cut(s) 216
BtsCI GGATG 4 cut(s) 262, 294, 523, 543
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 5 cut(s) 208, 365, 432, 504, 885
BveI ACCTGC 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 273
CciI TCATGA 1 cut(s) 354
CfoI GCGC 1 cut(s) 79
Cfr10I RCCGGY 2 cut(s) 693, 1050
Cfr13I GGNCC 1 cut(s) 1017
CseI GACGC 2 cut(s) 61, 985
Csp6I GTAC 3 cut(s) 151, 199, 617
CspAI ACCGGT 1 cut(s) 693
CviAII CATG 9 cut(s) 217, 355, 445, 550, 583, 702, 756, 854, 943
CviQI GTAC 3 cut(s) 151, 199, 617
DdeI CTNAG 2 cut(s) 276, 813
DpnI GATC 4 cut(s) 364, 405, 714, 863
DpnII GATC 4 cut(s) 362, 403, 712, 861
DraI TTTAAA 1 cut(s) 604
EaeI YGGCCR 2 cut(s) 822, 1052
EagI CGGCCG 1 cut(s) 1052
Eam1104I CTCTTC 2 cut(s) 2, 219
EarI CTCTTC 2 cut(s) 2, 219
EclXI CGGCCG 1 cut(s) 1052
Eco130I CCWWGG 2 cut(s) 216, 387
Eco147I AGGCCT 1 cut(s) 623
Eco31I GGTCTC 2 cut(s) 206, 559
Eco52I CGGCCG 1 cut(s) 1052
Eco57I CTGAAG 2 cut(s) 243, 1026
Eco88I CYCGRG 2 cut(s) 56, 992
EcoRI GAATTC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 238
EcoT14I CCWWGG 2 cut(s) 216, 387
EcoT22I ATGCAT 1 cut(s) 703
ErhI CCWWGG 2 cut(s) 216, 387
Esp3I CGTCTC 1 cut(s) 968
FaeI CATG 9 cut(s) 220, 358, 448, 553, 586, 705, 759, 857, 946
FalI AAGNNNNNCTT 6 cut(s) 73, 105, 171, 203, 930, 962
FaqI GGGAC 1 cut(s) 487
FatI CATG 9 cut(s) 216, 354, 444, 549, 582, 701, 755, 853, 942
FblI GTMKAC 2 cut(s) 588, 921
Fnu4HI GCNGC 5 cut(s) 269, 323, 333, 675, 678
FokI GGATG 4 cut(s) 269, 301, 530, 550
Fsp4HI GCNGC 5 cut(s) 269, 323, 333, 675, 678
FspBI CTAG 4 cut(s) 272, 671, 686, 1068
GlaI GCGC 1 cut(s) 78
GluI GCNGC 5 cut(s) 269, 323, 333, 675, 678
GsaI CCCAGC 1 cut(s) 509
HaeIII GGCC 4 cut(s) 623, 824, 1019, 1054
HapII CCGG 5 cut(s) 27, 122, 694, 1051, 1055
HgaI GACGC 2 cut(s) 61, 985
HhaI GCGC 1 cut(s) 79
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 9 cut(s) 220, 358, 448, 553, 586, 705, 759, 857, 946
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HincII GTYRAC 2 cut(s) 831, 922
HindII GTYRAC 2 cut(s) 831, 922
HinfI GANTC 4 cut(s) 10, 59, 118, 392
HpaII CCGG 5 cut(s) 27, 122, 694, 1051, 1055
HphI GGTGA 2 cut(s) 149, 1040
Hpy166II GTNNAC 5 cut(s) 432, 589, 788, 831, 922
Hpy188I TCNGA 4 cut(s) 64, 117, 840, 951
Hpy188III TCNNGA 4 cut(s) 56, 122, 191, 355
Hpy8I GTNNAC 5 cut(s) 432, 589, 788, 831, 922
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 2 cut(s) 134, 188
HpyCH4III ACNGT 5 cut(s) 203, 565, 593, 769, 880
HpyCH4IV ACGT 1 cut(s) 487
HpyCH4V TGCA 7 cut(s) 39, 335, 493, 629, 701, 737, 1027
HpyF10VI GCNNNNNNNGC 2 cut(s) 377, 686
HpyF3I CTNAG 2 cut(s) 276, 813
HpySE526I ACGT 1 cut(s) 487
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 9 cut(s) 220, 358, 448, 553, 586, 705, 759, 857, 946
HspAI GCGC 1 cut(s) 77
Kpn2I TCCGGA 1 cut(s) 121
Kzo9I GATC 4 cut(s) 362, 403, 712, 861
LmnI GCTCC 2 cut(s) 811, 984
Lsp1109I GCAGC 5 cut(s) 280, 309, 319, 686, 689
MaeI CTAG 4 cut(s) 272, 671, 686, 1068
MaeII ACGT 1 cut(s) 487
MaeIII GTNAC 2 cut(s) 559, 1046
MalI GATC 4 cut(s) 364, 405, 714, 863
MboI GATC 4 cut(s) 362, 403, 712, 861
MboII GAAGA 5 cut(s) 19, 236, 634, 810, 950
MflI RGATCY 1 cut(s) 403
MlsI TGGCCA 1 cut(s) 824
MluCI AATT 5 cut(s) 22, 316, 612, 658, 792
MluNI TGGCCA 1 cut(s) 824
MlyI GAGTC 2 cut(s) 19, 68
MmeI TCCRAC 1 cut(s) 42
Mox20I TGGCCA 1 cut(s) 824
Mph1103I ATGCAT 1 cut(s) 703
MroI TCCGGA 1 cut(s) 121
MroXI GAANNNNTTC 2 cut(s) 51, 186
MscI TGGCCA 1 cut(s) 824
MseI TTAA 3 cut(s) 99, 603, 750
MslI CAYNNNNRTG 2 cut(s) 566, 696
Msp20I TGGCCA 1 cut(s) 824
MspI CCGG 5 cut(s) 27, 122, 694, 1051, 1055
MspR9I CCNGG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 240
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 2 cut(s) 377, 686
NcoI CCATGG 1 cut(s) 216
NdeII GATC 4 cut(s) 362, 403, 712, 861
NheI GCTAGC 1 cut(s) 271
NlaIII CATG 9 cut(s) 220, 358, 448, 553, 586, 705, 759, 857, 946
NlaIV GGNNCC 2 cut(s) 48, 848
NmuCI GTSAC 2 cut(s) 559, 1046
NsiI ATGCAT 1 cut(s) 703
NspI RCATGY 1 cut(s) 946
OliI CACNNNNGTG 1 cut(s) 566
PaeR7I CTCGAG 2 cut(s) 56, 992
PagI TCATGA 1 cut(s) 354
PceI AGGCCT 1 cut(s) 623
PdmI GAANNNNTTC 2 cut(s) 51, 186
PfeI GAWTC 2 cut(s) 118, 392
PflFI GACNNNGTC 1 cut(s) 926
PinAI ACCGGT 1 cut(s) 693
PkrI GCNGC 5 cut(s) 270, 324, 334, 676, 679
PleI GAGTC 2 cut(s) 18, 67
PpsI GAGTC 2 cut(s) 18, 67
PshBI ATTAAT 1 cut(s) 750
Psp6I CCWGG 1 cut(s) 238
PspFI CCCAGC 1 cut(s) 505
PspGI CCWGG 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 48, 848
PspPI GGNCC 1 cut(s) 1017
PspXI VCTCGAGB 1 cut(s) 992
PstI CTGCAG 1 cut(s) 41
PsuI RGATCY 1 cut(s) 403
PsyI GACNNNGTC 1 cut(s) 926
RsaI GTAC 3 cut(s) 152, 200, 618
RsaNI GTAC 3 cut(s) 151, 199, 617
RseI CAYNNNNRTG 2 cut(s) 566, 696
SalI GTCGAC 1 cut(s) 920
SaqAI TTAA 3 cut(s) 99, 603, 750
SatI GCNGC 5 cut(s) 269, 323, 333, 675, 678
Sau3AI GATC 4 cut(s) 362, 403, 712, 861
Sau96I GGNCC 1 cut(s) 1017
SchI GAGTC 2 cut(s) 19, 68
ScrFI CCNGG 1 cut(s) 240
SfcI CTRYAG 1 cut(s) 37
Sfr274I CTCGAG 2 cut(s) 56, 992
SlaI CTCGAG 2 cut(s) 56, 992
SmiMI CAYNNNNRTG 2 cut(s) 566, 696
SmlI CTYRAG 2 cut(s) 56, 992
SmoI CTYRAG 2 cut(s) 56, 992
Sse9I AATT 5 cut(s) 22, 316, 612, 658, 792
SseBI AGGCCT 1 cut(s) 623
SsiI CCGC 3 cut(s) 14, 50, 460
SspI AATATT 1 cut(s) 167
SspMI CTAG 4 cut(s) 272, 671, 686, 1068
StuI AGGCCT 1 cut(s) 623
StyD4I CCNGG 1 cut(s) 238
StyI CCWWGG 2 cut(s) 216, 387
TaaI ACNGT 5 cut(s) 203, 565, 593, 769, 880
TaiI ACGT 1 cut(s) 490
TaqI TCGA 6 cut(s) 20, 57, 645, 921, 993, 1011
TaqII GACCGA 1 cut(s) 547
TasI AATT 5 cut(s) 22, 316, 612, 658, 792
TatI WGTACW 2 cut(s) 150, 616
TfiI GAWTC 2 cut(s) 118, 392
Tru1I TTAA 3 cut(s) 99, 603, 750
Tru9I TTAA 3 cut(s) 99, 603, 750
TscAI CASTG 5 cut(s) 208, 372, 439, 504, 885
TseFI GTSAC 2 cut(s) 559, 1046
TseI GCWGC 5 cut(s) 268, 322, 332, 674, 677
Tsp45I GTSAC 2 cut(s) 559, 1046
TspDTI ATGAA 5 cut(s) 273, 278, 287, 455, 624
TspRI CASTG 5 cut(s) 208, 372, 439, 504, 885
Tth111I GACNNNGTC 1 cut(s) 926
VspI ATTAAT 1 cut(s) 750
XapI RAATTY 1 cut(s) 22
XceI RCATGY 1 cut(s) 946
XcmI CCANNNNNNNNNTGG 1 cut(s) 87
XhoI CTCGAG 2 cut(s) 56, 992
XmiI GTMKAC 2 cut(s) 588, 921
XmnI GAANNNNTTC 2 cut(s) 51, 186
XspI CTAG 4 cut(s) 272, 671, 686, 1068
Zsp2I ATGCAT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.