AT1G17350

intermediate-associated protein 30

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005050
Physical Location & Seq
Forward (+)
5941549 .. 5944465
2917 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G17350.2

Sequence Viewer

Length: 684 bp
ATGTCAAGGTTTCGATCGTTGTTGCAAGCCTCAGTAAATGCGACAAAGAAGGCTCTTACATGGAACGTTGAAGAATGGGTGCCACCTGCAGAGAAGCATATATTTAAGTTCCACTCTAAAGAAGACTTAAAGAAATGGCATCTCTATTCCGACTCTGAATATGGAGGATTATCTTCGGCTTCCTTGGAGATCCCAGATAAAGGAGATGGATCAGATTGCACTGGAGTTTTTTCGGGGAACCTATCTGTAGACCTTAGCGAAGGATCAAAATGGAACATCAGTCGAAGTGGTTTCTGTGGAATGCGCTCAAAAAAGTTTGATGGCTTCATTGATCTCGATGGGTATGATGCAATAGCCCTGAGGATCAGAGGAGATGGAAGATGTTATATCTCTACTATCTACACCGAAAACTGGGTGAACTCACCGGGACAGTCAGAAGATAACTCGTGGCAAGCTTTTGTTTTTGCTCCAAAGGACAGTTGGTATACTGCTAAGATTCCTCTAGCTCGATACTTGCCAACATGGAGAGGAAATGTTATAGATGTGGAAATGGAGATGAATCCAGGTCGTGTTCTAGGTATGTCACTGTCCGTAAACGCAGAAGGTGGTGCAGTTGGAGCTAAATCAGGAGCAGGTGATTTCCGAGTAGAAATTGACTGGATCAAAGCCTTGAGATTGCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
CIA30

Protein Analysis

227

Amino Acids

25.25

Weight (kDa)

5.97

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CIA30 PF08547 35 - 222 2.3e-37 Complex I intermediate-associated protein 30 (CIA30)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 94, 623
Acc36I ACCTGC 2 cut(s) 94, 623
AccB1I GGYRCC 1 cut(s) 79
AccI GTMKAC 2 cut(s) 249, 485
AclI AACGTT 1 cut(s) 66
AclWI GGATC 5 cut(s) 184, 217, 271, 371, 668
AfiI CCNNNNNNNGG 2 cut(s) 200, 411
AgsI TTSAA 1 cut(s) 71
AjnI CCWGG 1 cut(s) 562
AluBI AGCT 3 cut(s) 455, 506, 620
AluI AGCT 3 cut(s) 455, 506, 620
AlwI GGATC 5 cut(s) 184, 217, 271, 371, 668
AspLEI GCGC 1 cut(s) 306
AsuC2I CCSGG 1 cut(s) 426
AsuHPI GGTGA 3 cut(s) 414, 427, 647
AxyI CCTNAGG 1 cut(s) 359
BanI GGYRCC 1 cut(s) 79
BauI CACGAG 1 cut(s) 445
BbsI GAAGAC 1 cut(s) 129
BccI CCATC 4 cut(s) 200, 314, 332, 368
BceAI ACGGC 1 cut(s) 664
BciT130I CCWGG 1 cut(s) 564
BcnI CCSGG 1 cut(s) 426
BfaI CTAG 2 cut(s) 503, 575
BfmI CTRYAG 2 cut(s) 87, 246
BfuAI ACCTGC 2 cut(s) 94, 623
Bme1390I CCNGG 2 cut(s) 426, 564
BmiI GGNNCC 2 cut(s) 81, 239
BmrFI CCNGG 2 cut(s) 426, 564
BmrI ACTGGG 1 cut(s) 421
BmsI GCATC 2 cut(s) 148, 337
BmuI ACTGGG 1 cut(s) 421
BpiI GAAGAC 1 cut(s) 129
BpmI CTGGAG 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 254
BpuMI CCSGG 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 183
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 411
Bse1I ACTGG 3 cut(s) 226, 416, 662
Bse21I CCTNAGG 1 cut(s) 359
BseBI CCWGG 1 cut(s) 564
BseDI CCNNGG 1 cut(s) 183
BseLI CCNNNNNNNGG 2 cut(s) 200, 411
BseMII CTCAG 2 cut(s) 45, 350
BseNI ACTGG 3 cut(s) 226, 416, 662
BseRI GAGGAG 1 cut(s) 384
BsgI GTGCAG 1 cut(s) 630
Bsh1285I CGRYCG 1 cut(s) 17
BshNI GGYRCC 1 cut(s) 79
BsiEI CGRYCG 1 cut(s) 17
BsiSI CCGG 1 cut(s) 425
BslFI GGGAC 1 cut(s) 441
BslI CCNNNNNNNGG 2 cut(s) 200, 411
BsmFI GGGAC 1 cut(s) 441
BsmI GAATGC 1 cut(s) 306
Bsp143I GATC 7 cut(s) 14, 189, 209, 263, 331, 363, 660
BspCNI CTCAG 2 cut(s) 44, 351
BspLI GGNNCC 2 cut(s) 81, 239
BspMAI CTGCAG 1 cut(s) 91
BspMI ACCTGC 2 cut(s) 94, 623
BspPI GGATC 5 cut(s) 184, 217, 271, 371, 668
BspT107I GGYRCC 1 cut(s) 79
BsrI ACTGG 3 cut(s) 226, 416, 662
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 7 cut(s) 14, 189, 209, 263, 331, 363, 660
BssNAI GTATAC 1 cut(s) 486
BssSI CACGAG 1 cut(s) 445
BssT1I CCWWGG 1 cut(s) 183
Bst1107I GTATAC 1 cut(s) 486
Bst2BI CACGAG 1 cut(s) 445
Bst2UI CCWGG 1 cut(s) 564
Bst4CI ACNGT 3 cut(s) 432, 479, 588
BstC8I GCNNGC 2 cut(s) 27, 453
BstDEI CTNAG 4 cut(s) 31, 254, 359, 492
BstHHI GCGC 1 cut(s) 306
BstKTI GATC 7 cut(s) 17, 192, 212, 266, 334, 366, 663
BstMBI GATC 7 cut(s) 14, 189, 209, 263, 331, 363, 660
BstMCI CGRYCG 1 cut(s) 17
BstMWI GCNNNNNNNGC 1 cut(s) 617
BstNI CCWGG 1 cut(s) 564
BstSCI CCNGG 2 cut(s) 424, 562
BstSFI CTRYAG 2 cut(s) 87, 246
BstV2I GAAGAC 1 cut(s) 129
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
BstZ17I GTATAC 1 cut(s) 486
Bsu36I CCTNAGG 1 cut(s) 359
BtsIMutI CAGTG 2 cut(s) 219, 584
BveI ACCTGC 2 cut(s) 94, 623
Cac8I GCNNGC 2 cut(s) 27, 453
CfoI GCGC 1 cut(s) 306
CviAII CATG 2 cut(s) 60, 522
CviJI RGCY 9 cut(s) 29, 53, 179, 324, 356, 455, 506, 620, 668
CviKI_1 RGCY 9 cut(s) 29, 53, 179, 324, 356, 455, 506, 620, 668
DdeI CTNAG 4 cut(s) 31, 254, 359, 492
DpnI GATC 7 cut(s) 16, 191, 211, 265, 333, 365, 662
DpnII GATC 7 cut(s) 14, 189, 209, 263, 331, 363, 660
Eco130I CCWWGG 1 cut(s) 183
Eco81I CCTNAGG 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 2 cut(s) 63, 525
FaqI GGGAC 1 cut(s) 441
FatI CATG 2 cut(s) 59, 521
FblI GTMKAC 2 cut(s) 249, 485
FspBI CTAG 2 cut(s) 503, 575
GlaI GCGC 1 cut(s) 305
GsuI CTGGAG 1 cut(s) 243
HapII CCGG 1 cut(s) 425
HhaI GCGC 1 cut(s) 306
Hin1II CATG 2 cut(s) 63, 525
Hin6I GCGC 1 cut(s) 304
HinP1I GCGC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 453
HinfI GANTC 3 cut(s) 152, 496, 559
HpaII CCGG 1 cut(s) 425
HphI GGTGA 3 cut(s) 414, 427, 647
Hpy166II GTNNAC 4 cut(s) 250, 418, 486, 595
Hpy188I TCNGA 6 cut(s) 151, 157, 214, 368, 436, 644
Hpy188III TCNNGA 2 cut(s) 335, 627
Hpy8I GTNNAC 4 cut(s) 250, 418, 486, 595
HpyAV CCTTC 3 cut(s) 43, 254, 596
HpyCH4III ACNGT 3 cut(s) 432, 479, 588
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 5 cut(s) 25, 89, 219, 350, 611
HpyF10VI GCNNNNNNNGC 1 cut(s) 617
HpyF3I CTNAG 4 cut(s) 31, 254, 359, 492
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 2 cut(s) 63, 525
HspAI GCGC 1 cut(s) 304
Kzo9I GATC 7 cut(s) 14, 189, 209, 263, 331, 363, 660
LmnI GCTCC 3 cut(s) 472, 617, 629
LweI GCATC 2 cut(s) 148, 337
MaeI CTAG 2 cut(s) 503, 575
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 582
MalI GATC 7 cut(s) 16, 191, 211, 265, 333, 365, 662
MboI GATC 7 cut(s) 14, 189, 209, 263, 331, 363, 660
MboII GAAGA 5 cut(s) 83, 134, 165, 390, 449
MflI RGATCY 1 cut(s) 189
MluCI AATT 1 cut(s) 651
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 2 cut(s) 174, 595
MnlI CCTC 6 cut(s) 40, 158, 354, 362, 510, 521
MseI TTAA 2 cut(s) 105, 128
MspI CCGG 1 cut(s) 425
MspR9I CCNGG 2 cut(s) 426, 564
Mva1269I GAATGC 1 cut(s) 306
MvaI CCWGG 1 cut(s) 564
MwoI GCNNNNNNNGC 1 cut(s) 617
NciI CCSGG 1 cut(s) 426
NdeII GATC 7 cut(s) 14, 189, 209, 263, 331, 363, 660
NlaIII CATG 2 cut(s) 63, 525
NlaIV GGNNCC 2 cut(s) 81, 239
NmuCI GTSAC 1 cut(s) 582
PaqCI CACCTGC 2 cut(s) 94, 623
PctI GAATGC 1 cut(s) 306
PfeI GAWTC 2 cut(s) 496, 559
Ple19I CGATCG 1 cut(s) 17
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Psp1406I AACGTT 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 562
PspGI CCWGG 1 cut(s) 562
PspN4I GGNNCC 2 cut(s) 81, 239
PstI CTGCAG 1 cut(s) 91
PsuI RGATCY 1 cut(s) 189
PvuI CGATCG 1 cut(s) 17
SaqAI TTAA 2 cut(s) 105, 128
Sau3AI GATC 7 cut(s) 14, 189, 209, 263, 331, 363, 660
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 2 cut(s) 426, 564
SfaNI GCATC 2 cut(s) 148, 337
SfcI CTRYAG 2 cut(s) 87, 246
SmlI CTYRAG 1 cut(s) 670
SmoI CTYRAG 1 cut(s) 670
Sse9I AATT 1 cut(s) 651
SspMI CTAG 2 cut(s) 503, 575
StyD4I CCNGG 2 cut(s) 424, 562
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 3 cut(s) 432, 479, 588
TaiI ACGT 1 cut(s) 69
TaqI TCGA 4 cut(s) 13, 283, 336, 508
TasI AATT 1 cut(s) 651
TfiI GAWTC 2 cut(s) 496, 559
Tru1I TTAA 2 cut(s) 105, 128
Tru9I TTAA 2 cut(s) 105, 128
TscAI CASTG 2 cut(s) 226, 591
TseFI GTSAC 1 cut(s) 582
Tsp45I GTSAC 1 cut(s) 582
TspDTI ATGAA 2 cut(s) 316, 572
TspGWI ACGGA 1 cut(s) 580
TspRI CASTG 2 cut(s) 226, 591
XcmI CCANNNNNNNNNTGG 1 cut(s) 477
XmiI GTMKAC 2 cut(s) 249, 485
XspI CTAG 2 cut(s) 503, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.