Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005050

Physical Location & Seq

Genomic Coordinates Forward (+)

2567426 .. 2571589

Gene Structure 4164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G035300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTCCAGGTTTCGAGGACTATTGCAAGCGTCCTTAAATGCAACCAAGAAAGCACTTACATGGAATGTTGAAGACCTGGTGCCTCCAACTGAGAGATATATTTTCAATTTCAATTCGAAGGATGAGCTCAAGAAGTGGCATCTATATTCTGATTCTGAATATGGAGGGTTGTCCTCGGCATCTTTAGAGATCCCAGATACTGGAAATGGACCCAACGGAATTTTCTCGGGTAACCTTTCGTTGGATTTCATTGAGGGTTCAAAATTGAAGATAAACAGGAGTGGCTTTTGTGGAATGCGGTCCAAAAAGTTTGACGGCTTCATTGATTTGGACCCATATGATACCGTAGCACTGAAAGTTAGAGGAGATGGAAGATGCTACATATCTACGATCTATACAGAAAATTGGGTAAATTCACCTGGGCAAGAAGAAGATAATTCGTGGCAAGCTTTTGTTTTTGTACCCAAAGACAACTGGTACATTGCAAAGATTCCTCTTGCCCGGTATCTACCAACATGGAGAGGAAATGTTATAGATGCAGAAATGGAAATGAATCCTTCTCGCGTTGTTGGTATGTCTCTATCAGTCAATGCAGAAGGTGGTCTCCCAGGTGCTAGAGTTGGACCGGGTGATTTCAAGCTCGAAATTGATTGGATCAAGGCTTTAAGAACACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

CIA30

Protein Analysis

226

Amino Acids

25.25

Weight (kDa)

5.58

Isoelectric Point (pI)

27.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17350 AT1G17350 AT1G17350 AT1G17350 AT1G17350 AT1G72420 AT1G72420 AT1G72420
fragaria_vesca	FvH4_6g35380 FvH4_6g35380 FvH4_6g35380 FvH4_6g35380 FvH4_6g35380
malus_domestica	MD09G1176300.v1.1 MD17G1150700.v1.1
prunus_persica	Prupe.3G035300_v2.0.a1
pyrus_communis	pycom17g14380
rosa_chinensis	RchiOBHm_Chr2g0146911
rosa_laevigata	RLG00000020225
rosa_multiflora	Rmu_sc0000566.1_g000015 Rmu_sc0004532.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099870
rosa_rugosa	Rorug02G0397300 Rorug02G0397300
rosa_samantha	Rh2AG453700 Rh2BG466500 Rh2CG440800 Rh2DG475400
rosa_wichuraiana	Rw0G022030 Rw2G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	79
AccB7I	CCANNNNNTGG	1 cut(s)	200
AccII	CGCG	1 cut(s)	564
AciI	CCGC	1 cut(s)	298
AclWI	GGATC	2 cut(s)	184, 662
AcsI	RAATTY	2 cut(s)	219, 412
AfaI	GTAC	2 cut(s)	462, 479
AfiI	CCNNNNNNNGG	2 cut(s)	200, 241
AgsI	TTSAA	6 cut(s)	71, 106, 112, 261, 268, 637
AjnI	CCWGG	4 cut(s)	5, 75, 418, 607
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AluBI	AGCT	3 cut(s)	127, 449, 640
AluI	AGCT	3 cut(s)	127, 449, 640
Alw21I	GWGCWC	1 cut(s)	129
Alw26I	GTCTC	2 cut(s)	582, 608
AlwI	GGATC	2 cut(s)	184, 662
AlwNI	CAGNNNCTG	1 cut(s)	200
Ama87I	CYCGRG	1 cut(s)	226
ApoI	RAATTY	2 cut(s)	219, 412
AspS9I	GGNCC	4 cut(s)	209, 300, 331, 623
AsuC2I	CCSGG	2 cut(s)	502, 627
AsuHPI	GGTGA	2 cut(s)	408, 641
AsuII	TTCGAA	1 cut(s)	116
AvaI	CYCGRG	1 cut(s)	226
AvaII	GGWCC	4 cut(s)	209, 300, 331, 623
BanI	GGYRCC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	129
BbsI	GAAGAC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	129
BccI	CCATC	1 cut(s)	362
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	4 cut(s)	7, 77, 420, 609
BcnI	CCSGG	2 cut(s)	502, 627
BcoDI	GTCTC	2 cut(s)	582, 608
BfaI	CTAG	1 cut(s)	615
Bme1390I	CCNGG	6 cut(s)	7, 77, 420, 502, 609, 627
Bme18I	GGWCC	4 cut(s)	209, 300, 331, 623
BmeT110I	CYCGRG	1 cut(s)	226
BmgT120I	GGNCC	4 cut(s)	209, 300, 331, 623
BmiI	GGNNCC	3 cut(s)	81, 211, 333
BmrFI	CCNGG	6 cut(s)	7, 77, 420, 502, 609, 627
BmsI	GCATC	4 cut(s)	148, 188, 365, 526
BpiI	GAAGAC	1 cut(s)	78
Bpu14I	TTCGAA	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	2 cut(s)	502, 627
BsaI	GGTCTC	1 cut(s)	608
BsaJI	CCNNGG	3 cut(s)	174, 419, 607
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 241
Bse1I	ACTGG	2 cut(s)	205, 479
Bse3DI	GCAATG	1 cut(s)	480
BseBI	CCWGG	4 cut(s)	7, 77, 420, 609
BseDI	CCNNGG	3 cut(s)	174, 419, 607
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	2 cut(s)	200, 241
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	2 cut(s)	205, 479
BseRI	GAGGAG	1 cut(s)	378
Bsh1236I	CGCG	1 cut(s)	564
BshNI	GGYRCC	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	129
BsiHKCI	CYCGRG	1 cut(s)	226
BsiSI	CCGG	2 cut(s)	502, 626
BslI	CCNNNNNNNGG	2 cut(s)	200, 241
BsmAI	GTCTC	2 cut(s)	582, 608
BsmI	GAATGC	1 cut(s)	300
Bso31I	GGTCTC	1 cut(s)	608
BsoBI	CYCGRG	1 cut(s)	226
Bsp119I	TTCGAA	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	3 cut(s)	189, 390, 654
BspACI	CCGC	1 cut(s)	298
BspCNI	CTCAG	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	564
BspLI	GGNNCC	3 cut(s)	81, 211, 333
BspPI	GGATC	2 cut(s)	184, 662
BspT104I	TTCGAA	1 cut(s)	116
BspT107I	GGYRCC	1 cut(s)	79
BspTNI	GGTCTC	1 cut(s)	608
BsrDI	GCAATG	1 cut(s)	480
BsrI	ACTGG	2 cut(s)	205, 479
BssECI	CCNNGG	3 cut(s)	174, 419, 607
BssMI	GATC	3 cut(s)	189, 390, 654
Bst2UI	CCWGG	4 cut(s)	7, 77, 420, 609
Bst4CI	ACNGT	2 cut(s)	346, 675
BstBI	TTCGAA	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	27, 447
BstDEI	CTNAG	1 cut(s)	90
BstEII	GGTNACC	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	127
BstFNI	CGCG	1 cut(s)	564
BstKTI	GATC	3 cut(s)	192, 393, 657
BstMAI	GTCTC	2 cut(s)	582, 608
BstMBI	GATC	3 cut(s)	189, 390, 654
BstNI	CCWGG	4 cut(s)	7, 77, 420, 609
BstPI	GGTNACC	1 cut(s)	230
BstSCI	CCNGG	6 cut(s)	5, 75, 418, 500, 607, 625
BstUI	CGCG	1 cut(s)	564
BstV2I	GAAGAC	1 cut(s)	78
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	350
Cac8I	GCNNGC	2 cut(s)	27, 447
CaiI	CAGNNNCTG	1 cut(s)	200
Cfr13I	GGNCC	4 cut(s)	209, 300, 331, 623
CseI	GACGC	1 cut(s)	18
CsiI	ACCWGGT	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	461, 478
CviAII	CATG	2 cut(s)	60, 516
CviJI	RGCY	6 cut(s)	127, 285, 318, 449, 640, 662
CviKI_1	RGCY	6 cut(s)	127, 285, 318, 449, 640, 662
CviQI	GTAC	2 cut(s)	461, 478
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	3 cut(s)	191, 392, 656
DpnII	GATC	3 cut(s)	189, 390, 654
Ecl136II	GAGCTC	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	608
Eco47I	GGWCC	4 cut(s)	209, 300, 331, 623
Eco53kI	GAGCTC	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	226
Eco91I	GGTNACC	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	127
EcoO65I	GGTNACC	1 cut(s)	230
EcoRII	CCWGG	4 cut(s)	5, 75, 418, 607
EcoT38I	GRGCYC	1 cut(s)	129
FaeI	CATG	2 cut(s)	63, 519
FatI	CATG	2 cut(s)	59, 515
FauNDI	CATATG	1 cut(s)	337
FokI	GGATG	1 cut(s)	134
FriOI	GRGCYC	1 cut(s)	129
FspBI	CTAG	1 cut(s)	615
HapII	CCGG	2 cut(s)	502, 626
HgaI	GACGC	1 cut(s)	18
Hin1II	CATG	2 cut(s)	63, 519
HindIII	AAGCTT	1 cut(s)	447
HinfI	GANTC	3 cut(s)	152, 490, 553
HpaII	CCGG	2 cut(s)	502, 626
HphI	GGTGA	2 cut(s)	408, 641
Hpy188I	TCNGA	2 cut(s)	151, 157
Hpy188III	TCNNGA	1 cut(s)	130
HpyAV	CCTTC	3 cut(s)	112, 567, 590
HpyCH4III	ACNGT	2 cut(s)	346, 675
HpyCH4V	TGCA	5 cut(s)	25, 41, 485, 539, 593
HpyF3I	CTNAG	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	63, 519
Kzo9I	GATC	3 cut(s)	189, 390, 654
LweI	GCATC	4 cut(s)	148, 188, 365, 526
MabI	ACCWGGT	1 cut(s)	75
MaeI	CTAG	1 cut(s)	615
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	3 cut(s)	191, 392, 656
MboI	GATC	3 cut(s)	189, 390, 654
MboII	GAAGA	5 cut(s)	83, 280, 384, 440, 443
MflI	RGATCY	1 cut(s)	189
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	8 cut(s)	106, 112, 219, 263, 403, 412, 436, 645
MmeI	TCCRAC	3 cut(s)	110, 222, 601
MnlI	CCTC	8 cut(s)	8, 93, 158, 184, 247, 356, 504, 515
MseI	TTAA	2 cut(s)	35, 665
MslI	CAYNNNNRTG	1 cut(s)	58
MspI	CCGG	2 cut(s)	502, 626
MspR9I	CCNGG	6 cut(s)	7, 77, 420, 502, 609, 627
Mva1269I	GAATGC	1 cut(s)	300
MvaI	CCWGG	4 cut(s)	7, 77, 420, 609
MvnI	CGCG	1 cut(s)	564
NciI	CCSGG	2 cut(s)	502, 627
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	3 cut(s)	189, 390, 654
NlaIII	CATG	2 cut(s)	63, 519
NlaIV	GGNNCC	3 cut(s)	81, 211, 333
NmeAIII	GCCGAG	1 cut(s)	155
NspV	TTCGAA	1 cut(s)	116
PctI	GAATGC	1 cut(s)	300
PfeI	GAWTC	3 cut(s)	152, 490, 553
PflMI	CCANNNNNTGG	1 cut(s)	200
Psp124BI	GAGCTC	1 cut(s)	129
Psp6I	CCWGG	4 cut(s)	5, 75, 418, 607
PspEI	GGTNACC	1 cut(s)	230
PspGI	CCWGG	4 cut(s)	5, 75, 418, 607
PspN4I	GGNNCC	3 cut(s)	81, 211, 333
PspPI	GGNCC	4 cut(s)	209, 300, 331, 623
PstNI	CAGNNNCTG	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	189
RsaI	GTAC	2 cut(s)	462, 479
RsaNI	GTAC	2 cut(s)	461, 478
RseI	CAYNNNNRTG	1 cut(s)	58
SacI	GAGCTC	1 cut(s)	129
SaqAI	TTAA	2 cut(s)	35, 665
Sau3AI	GATC	3 cut(s)	189, 390, 654
Sau96I	GGNCC	4 cut(s)	209, 300, 331, 623
ScrFI	CCNGG	6 cut(s)	7, 77, 420, 502, 609, 627
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	9 cut(s)	11, 78, 129, 237, 421, 451, 601, 613, 642
SexAI	ACCWGGT	1 cut(s)	75
SfaNI	GCATC	4 cut(s)	148, 188, 365, 526
SfuI	TTCGAA	1 cut(s)	116
SinI	GGWCC	4 cut(s)	209, 300, 331, 623
SmiMI	CAYNNNNRTG	1 cut(s)	58
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	8 cut(s)	106, 112, 219, 263, 403, 412, 436, 645
SsiI	CCGC	1 cut(s)	298
SspMI	CTAG	1 cut(s)	615
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	6 cut(s)	5, 75, 418, 500, 607, 625
TaaI	ACNGT	2 cut(s)	346, 675
TaqI	TCGA	3 cut(s)	13, 116, 642
TasI	AATT	8 cut(s)	106, 112, 219, 263, 403, 412, 436, 645
TfiI	GAWTC	3 cut(s)	152, 490, 553
Tru1I	TTAA	2 cut(s)	35, 665
Tru9I	TTAA	2 cut(s)	35, 665
TscAI	CASTG	1 cut(s)	357
TspDTI	ATGAA	3 cut(s)	238, 310, 566
TspGWI	ACGGA	1 cut(s)	231
TspRI	CASTG	1 cut(s)	357
Van91I	CCANNNNNTGG	1 cut(s)	200
VpaK11BI	GGWCC	4 cut(s)	209, 300, 331, 623
XapI	RAATTY	2 cut(s)	219, 412
XspI	CTAG	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.