Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000566.1

Orthogroup ID

OG0005050

Physical Location & Seq

Genomic Coordinates Reverse (-)

56180 .. 57920

Gene Structure 1741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000566.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atgtccaggtttcgagcactgttgcaagcaaccaagaaagctctcacatggaatgtcgaagacctggtgcctcccagtgagagatatatatttaatttcggttcaaaggaagagctgaagaagtggcatttatattctgattctgaatatggagggttgtcctcagcatctttagagatatcagatactggaaatggactcaatggaattttctcgggtaacctttcttctgattttgctgagggttcaaagtggaagatgaacaggagtggcttttgtggaatgcggtccaaaaagtttaatggcttcattgatttggatgcatatgataccatatcactaaaagttaaaggagacggaagatcctacatatctacgatttatacagaaaactgggtaaattcccctggacaagatgaagataattcatggcaggcttttgtttttgtaccaaaagacaactggtacattgcaaaggcaagttctacttacctcaatgggttttgcttagttatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

CIA30

Protein Analysis

172

Amino Acids

19.4

Weight (kDa)

5.86

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17350 AT1G17350 AT1G17350 AT1G17350 AT1G17350 AT1G72420 AT1G72420 AT1G72420
fragaria_vesca	FvH4_6g35380 FvH4_6g35380 FvH4_6g35380 FvH4_6g35380 FvH4_6g35380
malus_domestica	MD09G1176300.v1.1 MD17G1150700.v1.1
prunus_persica	Prupe.3G035300_v2.0.a1
pyrus_communis	pycom17g14380
rosa_chinensis	RchiOBHm_Chr2g0146911
rosa_laevigata	RLG00000020225
rosa_multiflora	Rmu_sc0000566.1_g000015 Rmu_sc0004532.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099870
rosa_rugosa	Rorug02G0397300 Rorug02G0397300
rosa_samantha	Rh2AG453700 Rh2BG466500 Rh2CG440800 Rh2DG475400
rosa_wichuraiana	Rw0G022030 Rw2G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	67
AciI	CCGC	1 cut(s)	286
AclWI	GGATC	1 cut(s)	357
AcsI	RAATTY	2 cut(s)	207, 400
AcuI	CTGAAG	1 cut(s)	137
AfaI	GTAC	2 cut(s)	450, 467
AgsI	TTSAA	2 cut(s)	105, 249
AjnI	CCWGG	3 cut(s)	5, 63, 406
AluBI	AGCT	2 cut(s)	41, 115
AluI	AGCT	2 cut(s)	41, 115
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	1 cut(s)	348
AlwI	GGATC	1 cut(s)	357
AlwNI	CAGNNNCTG	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	214
ApoI	RAATTY	2 cut(s)	207, 400
AspS9I	GGNCC	1 cut(s)	288
AvaI	CYCGRG	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	288
BanI	GGYRCC	1 cut(s)	67
BarI	GAAGNNNNNNTAC	2 cut(s)	211, 243
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	19
BbvCI	CCTCAGC	2 cut(s)	163, 240
BciT130I	CCWGG	3 cut(s)	7, 65, 408
BcoDI	GTCTC	1 cut(s)	348
Bme1390I	CCNGG	3 cut(s)	7, 65, 408
Bme18I	GGWCC	1 cut(s)	288
BmeT110I	CYCGRG	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	288
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	3 cut(s)	7, 65, 408
BmrI	ACTGGG	2 cut(s)	69, 403
BmsI	GCATC	2 cut(s)	176, 310
BmuI	ACTGGG	2 cut(s)	69, 403
BpiI	GAAGAC	1 cut(s)	66
Bpu10I	CCTNAGC	2 cut(s)	163, 240
BsaJI	CCNNGG	1 cut(s)	406
Bse1I	ACTGG	4 cut(s)	75, 193, 398, 467
Bse3DI	GCAATG	1 cut(s)	468
BseBI	CCWGG	3 cut(s)	7, 65, 408
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	1 cut(s)	325
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	2 cut(s)	177, 231
BseNI	ACTGG	4 cut(s)	75, 193, 398, 467
BshNI	GGYRCC	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	19
BsiHKCI	CYCGRG	1 cut(s)	214
BsmAI	GTCTC	1 cut(s)	348
BsmBI	CGTCTC	1 cut(s)	348
BsmI	GAATGC	1 cut(s)	288
BsoBI	CYCGRG	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	1 cut(s)	362
BspACI	CCGC	1 cut(s)	286
BspCNI	CTCAG	2 cut(s)	176, 232
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	357
BspQI	GCTCTTC	1 cut(s)	105
BspT107I	GGYRCC	1 cut(s)	67
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	4 cut(s)	75, 193, 398, 467
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	1 cut(s)	362
Bst2UI	CCWGG	3 cut(s)	7, 65, 408
Bst4CI	ACNGT	1 cut(s)	21
Bst6I	CTCTTC	1 cut(s)	105
BstC8I	GCNNGC	2 cut(s)	27, 435
BstDEI	CTNAG	3 cut(s)	163, 240, 508
BstEII	GGTNACC	1 cut(s)	218
BstF5I	GGATG	1 cut(s)	325
BstKTI	GATC	1 cut(s)	365
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	1 cut(s)	362
BstNI	CCWGG	3 cut(s)	7, 65, 408
BstPI	GGTNACC	1 cut(s)	218
BstSCI	CCNGG	3 cut(s)	5, 63, 406
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
BtsCI	GGATG	1 cut(s)	325
BtsIMutI	CAGTG	2 cut(s)	17, 82
Cac8I	GCNNGC	2 cut(s)	27, 435
CaiI	CAGNNNCTG	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	288
CsiI	ACCWGGT	1 cut(s)	63
Csp6I	GTAC	2 cut(s)	449, 466
CviAII	CATG	2 cut(s)	48, 429
CviJI	RGCY	5 cut(s)	41, 115, 273, 306, 437
CviKI_1	RGCY	5 cut(s)	41, 115, 273, 306, 437
CviQI	GTAC	2 cut(s)	449, 466
DdeI	CTNAG	3 cut(s)	163, 240, 508
DpnI	GATC	1 cut(s)	364
DpnII	GATC	1 cut(s)	362
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco32I	GATATC	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	288
Eco57I	CTGAAG	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	214
Eco91I	GGTNACC	1 cut(s)	218
EcoO65I	GGTNACC	1 cut(s)	218
EcoRII	CCWGG	3 cut(s)	5, 63, 406
EcoRV	GATATC	1 cut(s)	180
EcoT22I	ATGCAT	1 cut(s)	325
Esp3I	CGTCTC	1 cut(s)	348
FaeI	CATG	2 cut(s)	51, 432
FalI	AAGNNNNNCTT	2 cut(s)	472, 504
FatI	CATG	2 cut(s)	47, 428
FauNDI	CATATG	1 cut(s)	325
FokI	GGATG	1 cut(s)	332
Hin1II	CATG	2 cut(s)	51, 432
HinfI	GANTC	2 cut(s)	140, 198
Hpy188I	TCNGA	4 cut(s)	139, 145, 184, 232
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4V	TGCA	3 cut(s)	25, 323, 473
HpyF3I	CTNAG	3 cut(s)	163, 240, 508
Hsp92II	CATG	2 cut(s)	51, 432
Kzo9I	GATC	1 cut(s)	362
LguI	GCTCTTC	1 cut(s)	105
LweI	GCATC	2 cut(s)	176, 310
MabI	ACCWGGT	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	1 cut(s)	364
MboI	GATC	1 cut(s)	362
MboII	GAAGA	7 cut(s)	71, 122, 130, 219, 268, 372, 431
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	4 cut(s)	94, 207, 400, 424
MlyI	GAGTC	1 cut(s)	192
MnlI	CCTC	5 cut(s)	81, 146, 172, 235, 503
Mph1103I	ATGCAT	1 cut(s)	325
MseI	TTAA	3 cut(s)	93, 300, 348
MspR9I	CCNGG	3 cut(s)	7, 65, 408
Mva1269I	GAATGC	1 cut(s)	288
MvaI	CCWGG	3 cut(s)	7, 65, 408
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	1 cut(s)	362
NlaIII	CATG	2 cut(s)	51, 432
NlaIV	GGNNCC	1 cut(s)	69
NsiI	ATGCAT	1 cut(s)	325
PciSI	GCTCTTC	1 cut(s)	105
PctI	GAATGC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	140
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
Psp6I	CCWGG	3 cut(s)	5, 63, 406
PspEI	GGTNACC	1 cut(s)	218
PspGI	CCWGG	3 cut(s)	5, 63, 406
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	288
PstNI	CAGNNNCTG	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	362
RsaI	GTAC	2 cut(s)	450, 467
RsaNI	GTAC	2 cut(s)	449, 466
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	93, 300, 348
Sau3AI	GATC	1 cut(s)	362
Sau96I	GGNCC	1 cut(s)	288
SchI	GAGTC	1 cut(s)	192
ScrFI	CCNGG	3 cut(s)	7, 65, 408
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	6 cut(s)	11, 43, 66, 117, 225, 495
SexAI	ACCWGGT	1 cut(s)	63
SfaNI	GCATC	2 cut(s)	176, 310
SinI	GGWCC	1 cut(s)	288
Sse9I	AATT	4 cut(s)	94, 207, 400, 424
SsiI	CCGC	1 cut(s)	286
StyD4I	CCNGG	3 cut(s)	5, 63, 406
TaaI	ACNGT	1 cut(s)	21
TaqI	TCGA	2 cut(s)	13, 57
TasI	AATT	4 cut(s)	94, 207, 400, 424
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	3 cut(s)	93, 300, 348
Tru9I	TTAA	3 cut(s)	93, 300, 348
TscAI	CASTG	2 cut(s)	24, 82
TspDTI	ATGAA	4 cut(s)	275, 298, 417, 432
TspGWI	ACGGA	1 cut(s)	372
TspRI	CASTG	2 cut(s)	24, 82
VpaK11BI	GGWCC	1 cut(s)	288
XapI	RAATTY	2 cut(s)	207, 400
XcmI	CCANNNNNNNNNTGG	1 cut(s)	459
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.