Rh2CG440800

complex I intermediate-associated protein 30

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0005050
Physical Location & Seq
Reverse (-)
59748861 .. 59753202
4342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG440800.1

Sequence Viewer

Length: 735 bp
ATGAATTTCTGGAATTTTAAGAACGTTGGAGCTATTTTTGTTAGGTGTAGGAACTTTGAGGAAAGAGAAATGTCCAGGTTTCGAGCACTGTTGCAAGCAACCAAGAAAGCTCTCACATGGAATGTCGAAGACCTGGTGCCTCCCAGTGAGAGATATATATTTAATTTCGGTTCAAAGGAAGAGCTGAAGAAGTGGCATTTATATTCTGATTCTGAATATGGAGGGTTGTCCTCAGCATCTTTGGAGATATCAGATACTGGAAATGGACTCAATGGAATTTTCTCGGGTAACCTTTCTTCTGATTTTGCTGAGGGTTCAAAGTGGAAGATGAACAGGAGTGGCTTTTGTGGAATGCGGTCCAAAAAGTTTAATGGCTTCATTGATTTGGATGCATATGATACCATATCACTAAAAGTTAAAGGAGACGGAAGATCCTACATATCTACGATTTATACAGAAAACTGGGTAAATTCCCCTGGACAAGATGAAGATAATTCATGGCAGGCTTTTGTTTTTGTACCAAAAGACAACTGGTACATTGCAAAGATTCCTCTTTCTCGTTATCTACCAACATGGAGAGGGAGTGTAATAGACGCAGAGATGGAAATGAATCCTGCCCGCGTTGTTGGTATGTCTCTCTCAGTGAATGCAGAAGGTGGTGTCCCGGGTGCTAGATCTGGTCCGGGTGATTTCAAGCTTGAAATTGATTGGATAAAGGCTTTAAGAAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
CIA30

Protein Analysis

244

Amino Acids

27.66

Weight (kDa)

6.65

Isoelectric Point (pI)

31.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CIA30 PF08547 54 - 235 4.2e-43 Complex I intermediate-associated protein 30 (CIA30)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 136
AccII CGCG 1 cut(s) 621
AciI CCGC 2 cut(s) 355, 619
AclI AACGTT 1 cut(s) 24
AclWI GGATC 1 cut(s) 426
AcsI RAATTY 4 cut(s) 4, 13, 276, 469
AcuI CTGAAG 1 cut(s) 206
AfaI GTAC 2 cut(s) 519, 536
AgsI TTSAA 4 cut(s) 174, 318, 694, 701
AjnI CCWGG 3 cut(s) 74, 132, 475
AluBI AGCT 4 cut(s) 32, 110, 184, 697
AluI AGCT 4 cut(s) 32, 110, 184, 697
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 2 cut(s) 417, 639
AlwI GGATC 1 cut(s) 426
AlwNI CAGNNNCTG 1 cut(s) 257
Ama87I CYCGRG 2 cut(s) 283, 664
ApoI RAATTY 4 cut(s) 4, 13, 276, 469
AspS9I GGNCC 2 cut(s) 357, 680
AsuC2I CCSGG 3 cut(s) 665, 666, 684
AsuHPI GGTGA 1 cut(s) 698
AvaI CYCGRG 2 cut(s) 283, 664
AvaII GGWCC 2 cut(s) 357, 680
BanI GGYRCC 1 cut(s) 136
BarI GAAGNNNNNNTAC 2 cut(s) 280, 312
BbsI GAAGAC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 88
BbvCI CCTCAGC 2 cut(s) 232, 309
BccI CCATC 1 cut(s) 595
BciT130I CCWGG 3 cut(s) 76, 134, 477
BcnI CCSGG 3 cut(s) 665, 666, 684
BcoDI GTCTC 2 cut(s) 417, 639
BfaI CTAG 1 cut(s) 672
BglII AGATCT 1 cut(s) 674
Bme1390I CCNGG 6 cut(s) 76, 134, 477, 665, 666, 684
Bme18I GGWCC 2 cut(s) 357, 680
BmeT110I CYCGRG 2 cut(s) 283, 664
BmgT120I GGNCC 2 cut(s) 357, 680
BmiI GGNNCC 1 cut(s) 138
BmrFI CCNGG 6 cut(s) 76, 134, 477, 665, 666, 684
BmrI ACTGGG 2 cut(s) 138, 472
BmsI GCATC 2 cut(s) 245, 379
BmuI ACTGGG 2 cut(s) 138, 472
BpiI GAAGAC 1 cut(s) 135
Bpu10I CCTNAGC 2 cut(s) 232, 309
BpuMI CCSGG 3 cut(s) 665, 666, 684
BsaJI CCNNGG 2 cut(s) 475, 664
BsaXI ACNNNNNCTCC 2 cut(s) 568, 598
Bse1I ACTGG 4 cut(s) 144, 262, 467, 536
Bse3DI GCAATG 1 cut(s) 537
BseBI CCWGG 3 cut(s) 76, 134, 477
BseDI CCNNGG 2 cut(s) 475, 664
BseGI GGATG 1 cut(s) 394
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 3 cut(s) 246, 300, 654
BseNI ACTGG 4 cut(s) 144, 262, 467, 536
Bsh1236I CGCG 1 cut(s) 621
BshNI GGYRCC 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 88
BsiHKCI CYCGRG 2 cut(s) 283, 664
BsiSI CCGG 2 cut(s) 665, 683
BslFI GGGAC 1 cut(s) 647
BsmAI GTCTC 2 cut(s) 417, 639
BsmBI CGTCTC 1 cut(s) 417
BsmFI GGGAC 1 cut(s) 647
BsmI GAATGC 2 cut(s) 357, 652
BsoBI CYCGRG 2 cut(s) 283, 664
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 2 cut(s) 431, 674
BspACI CCGC 2 cut(s) 355, 619
BspCNI CTCAG 3 cut(s) 245, 301, 653
BspFNI CGCG 1 cut(s) 621
BspLI GGNNCC 1 cut(s) 138
BspPI GGATC 1 cut(s) 426
BspQI GCTCTTC 1 cut(s) 174
BspT107I GGYRCC 1 cut(s) 136
BsrDI GCAATG 1 cut(s) 537
BsrI ACTGG 4 cut(s) 144, 262, 467, 536
BssECI CCNNGG 2 cut(s) 475, 664
BssMI GATC 2 cut(s) 431, 674
Bst2UI CCWGG 3 cut(s) 76, 134, 477
Bst4CI ACNGT 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 174
BstC8I GCNNGC 3 cut(s) 96, 504, 619
BstDEI CTNAG 3 cut(s) 232, 309, 640
BstEII GGTNACC 1 cut(s) 287
BstF5I GGATG 1 cut(s) 394
BstFNI CGCG 1 cut(s) 621
BstKTI GATC 2 cut(s) 434, 677
BstMAI GTCTC 2 cut(s) 417, 639
BstMBI GATC 2 cut(s) 431, 674
BstNI CCWGG 3 cut(s) 76, 134, 477
BstPI GGTNACC 1 cut(s) 287
BstSCI CCNGG 6 cut(s) 74, 132, 475, 663, 664, 682
BstUI CGCG 1 cut(s) 621
BstV2I GAAGAC 1 cut(s) 135
BstX2I RGATCY 2 cut(s) 431, 674
BstYI RGATCY 2 cut(s) 431, 674
BtsCI GGATG 1 cut(s) 394
BtsIMutI CAGTG 3 cut(s) 86, 151, 648
Cac8I GCNNGC 3 cut(s) 96, 504, 619
CaiI CAGNNNCTG 1 cut(s) 257
Cfr13I GGNCC 2 cut(s) 357, 680
Cfr9I CCCGGG 1 cut(s) 664
CseI GACGC 1 cut(s) 602
CsiI ACCWGGT 1 cut(s) 132
Csp6I GTAC 2 cut(s) 518, 535
CviAII CATG 3 cut(s) 117, 498, 573
CviJI RGCY 8 cut(s) 32, 110, 184, 342, 375, 506, 697, 719
CviKI_1 RGCY 8 cut(s) 32, 110, 184, 342, 375, 506, 697, 719
CviQI GTAC 2 cut(s) 518, 535
DdeI CTNAG 3 cut(s) 232, 309, 640
DpnI GATC 2 cut(s) 433, 676
DpnII GATC 2 cut(s) 431, 674
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco32I GATATC 1 cut(s) 249
Eco47I GGWCC 2 cut(s) 357, 680
Eco57I CTGAAG 1 cut(s) 206
Eco88I CYCGRG 2 cut(s) 283, 664
Eco91I GGTNACC 1 cut(s) 287
EcoO65I GGTNACC 1 cut(s) 287
EcoRII CCWGG 3 cut(s) 74, 132, 475
EcoRV GATATC 1 cut(s) 249
EcoT22I ATGCAT 1 cut(s) 394
Esp3I CGTCTC 1 cut(s) 417
FaeI CATG 3 cut(s) 120, 501, 576
FaqI GGGAC 1 cut(s) 647
FatI CATG 3 cut(s) 116, 497, 572
FauI CCCGC 1 cut(s) 626
FauNDI CATATG 1 cut(s) 394
FokI GGATG 1 cut(s) 401
FspBI CTAG 1 cut(s) 672
HapII CCGG 2 cut(s) 665, 683
HgaI GACGC 1 cut(s) 602
Hin1II CATG 3 cut(s) 120, 501, 576
HindIII AAGCTT 1 cut(s) 695
HinfI GANTC 4 cut(s) 209, 267, 547, 610
HpaII CCGG 2 cut(s) 665, 683
HphI GGTGA 1 cut(s) 698
Hpy188I TCNGA 4 cut(s) 208, 214, 253, 301
Hpy188III TCNNGA 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 647
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 4 cut(s) 94, 392, 542, 650
HpyF3I CTNAG 3 cut(s) 232, 309, 640
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 3 cut(s) 120, 501, 576
Kzo9I GATC 2 cut(s) 431, 674
LguI GCTCTTC 1 cut(s) 174
LmnI GCTCC 1 cut(s) 29
LweI GCATC 2 cut(s) 245, 379
MabI ACCWGGT 1 cut(s) 132
MaeI CTAG 1 cut(s) 672
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 287
MalI GATC 2 cut(s) 433, 676
MboI GATC 2 cut(s) 431, 674
MboII GAAGA 7 cut(s) 140, 191, 199, 288, 337, 441, 500
MflI RGATCY 2 cut(s) 431, 674
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 7 cut(s) 4, 13, 163, 276, 469, 493, 702
MlyI GAGTC 1 cut(s) 261
MmeI TCCRAC 1 cut(s) 7
MnlI CCTC 7 cut(s) 52, 150, 215, 241, 304, 561, 572
Mph1103I ATGCAT 1 cut(s) 394
MseI TTAA 5 cut(s) 18, 162, 369, 417, 722
MspI CCGG 2 cut(s) 665, 683
MspR9I CCNGG 6 cut(s) 76, 134, 477, 665, 666, 684
Mva1269I GAATGC 2 cut(s) 357, 652
MvaI CCWGG 3 cut(s) 76, 134, 477
MvnI CGCG 1 cut(s) 621
NciI CCSGG 3 cut(s) 665, 666, 684
NdeI CATATG 1 cut(s) 394
NdeII GATC 2 cut(s) 431, 674
NlaIII CATG 3 cut(s) 120, 501, 576
NlaIV GGNNCC 1 cut(s) 138
NsiI ATGCAT 1 cut(s) 394
PciSI GCTCTTC 1 cut(s) 174
PctI GAATGC 2 cut(s) 357, 652
PfeI GAWTC 3 cut(s) 209, 547, 610
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
Psp1406I AACGTT 1 cut(s) 24
Psp6I CCWGG 3 cut(s) 74, 132, 475
PspEI GGTNACC 1 cut(s) 287
PspGI CCWGG 3 cut(s) 74, 132, 475
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 2 cut(s) 357, 680
PstNI CAGNNNCTG 1 cut(s) 257
PsuI RGATCY 2 cut(s) 431, 674
RsaI GTAC 2 cut(s) 519, 536
RsaNI GTAC 2 cut(s) 518, 535
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 5 cut(s) 18, 162, 369, 417, 722
Sau3AI GATC 2 cut(s) 431, 674
Sau96I GGNCC 2 cut(s) 357, 680
SchI GAGTC 1 cut(s) 261
ScrFI CCNGG 6 cut(s) 76, 134, 477, 665, 666, 684
SduI GDGCHC 1 cut(s) 88
SexAI ACCWGGT 1 cut(s) 132
SfaNI GCATC 2 cut(s) 245, 379
SinI GGWCC 2 cut(s) 357, 680
SmaI CCCGGG 1 cut(s) 666
Sse9I AATT 7 cut(s) 4, 13, 163, 276, 469, 493, 702
SsiI CCGC 2 cut(s) 355, 619
SspMI CTAG 1 cut(s) 672
StyD4I CCNGG 6 cut(s) 74, 132, 475, 663, 664, 682
TaaI ACNGT 1 cut(s) 90
TaiI ACGT 1 cut(s) 27
TaqI TCGA 2 cut(s) 82, 126
TasI AATT 7 cut(s) 4, 13, 163, 276, 469, 493, 702
TfiI GAWTC 3 cut(s) 209, 547, 610
Tru1I TTAA 5 cut(s) 18, 162, 369, 417, 722
Tru9I TTAA 5 cut(s) 18, 162, 369, 417, 722
TscAI CASTG 3 cut(s) 93, 151, 648
TspDTI ATGAA 6 cut(s) 17, 344, 367, 486, 501, 623
TspGWI ACGGA 1 cut(s) 441
TspMI CCCGGG 1 cut(s) 664
TspRI CASTG 3 cut(s) 93, 151, 648
VpaK11BI GGWCC 2 cut(s) 357, 680
XapI RAATTY 4 cut(s) 4, 13, 276, 469
XcmI CCANNNNNNNNNTGG 1 cut(s) 528
XmaI CCCGGG 1 cut(s) 664
XspI CTAG 1 cut(s) 672
Zsp2I ATGCAT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.