Rmu_sc0004532.1_g000001

complex I intermediate-associated protein 30

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004532.1
Physical Location & Seq
Forward (+)
1 .. 458
458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004532.1_g000001.1.cds

Sequence Viewer

Length: 189 bp
attcctatttctcgttatctaccaacatggagagggagtgttatagacgcagagatggaaatgaatcctgcccgcgttgttggtatgtctctctcagtgaatgcagaaggtggtgtcccgggtgctagatctggtccgggtgatttcaagcttgaaattgattggataaaggctttaagaacagagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

62

Amino Acids

6.74

Weight (kDa)

5.3

Isoelectric Point (pI)

32.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 75
AciI CCGC 1 cut(s) 73
AgsI TTSAA 2 cut(s) 148, 155
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 93
Ama87I CYCGRG 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 134
AsuC2I CCSGG 3 cut(s) 119, 120, 138
AsuHPI GGTGA 1 cut(s) 152
AvaI CYCGRG 1 cut(s) 118
AvaII GGWCC 1 cut(s) 134
BccI CCATC 1 cut(s) 49
BcnI CCSGG 3 cut(s) 119, 120, 138
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 1 cut(s) 126
BglII AGATCT 1 cut(s) 128
Bme1390I CCNGG 3 cut(s) 119, 120, 138
Bme18I GGWCC 1 cut(s) 134
BmeT110I CYCGRG 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 134
BmrFI CCNGG 3 cut(s) 119, 120, 138
BpuMI CCSGG 3 cut(s) 119, 120, 138
BsaJI CCNNGG 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
BseDI CCNNGG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 108
Bsh1236I CGCG 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 118
BsiSI CCGG 2 cut(s) 119, 137
BslFI GGGAC 1 cut(s) 101
BsmAI GTCTC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 101
BsmI GAATGC 1 cut(s) 106
BsoBI CYCGRG 1 cut(s) 118
Bsp143I GATC 1 cut(s) 128
BspACI CCGC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 107
BspFNI CGCG 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 94
BstFNI CGCG 1 cut(s) 75
BstKTI GATC 1 cut(s) 131
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 1 cut(s) 128
BstSCI CCNGG 3 cut(s) 117, 118, 136
BstUI CGCG 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 134
Cfr9I CCCGGG 1 cut(s) 118
CseI GACGC 1 cut(s) 56
CviAII CATG 1 cut(s) 27
CviJI RGCY 2 cut(s) 151, 173
CviKI_1 RGCY 2 cut(s) 151, 173
DdeI CTNAG 1 cut(s) 94
DpnI GATC 1 cut(s) 130
DpnII GATC 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 118
FaeI CATG 1 cut(s) 30
FaiI YATR 3 cut(s) 28, 44, 86
FaqI GGGAC 1 cut(s) 101
FatI CATG 1 cut(s) 26
FauI CCCGC 1 cut(s) 80
FspBI CTAG 1 cut(s) 126
HapII CCGG 2 cut(s) 119, 137
HgaI GACGC 1 cut(s) 56
Hin1II CATG 1 cut(s) 30
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 1 cut(s) 64
HpaII CCGG 2 cut(s) 119, 137
HphI GGTGA 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 101
HpyCH4V TGCA 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 94
Hsp92II CATG 1 cut(s) 30
Kzo9I GATC 1 cut(s) 128
LpnPI CCDG 4 cut(s) 81, 117, 132, 150
MaeI CTAG 1 cut(s) 126
MalI GATC 1 cut(s) 130
MboI GATC 1 cut(s) 128
MflI RGATCY 1 cut(s) 128
MluCI AATT 1 cut(s) 156
MnlI CCTC 1 cut(s) 26
MseI TTAA 1 cut(s) 176
MspI CCGG 2 cut(s) 119, 137
MspR9I CCNGG 3 cut(s) 119, 120, 138
Mva1269I GAATGC 1 cut(s) 106
MvnI CGCG 1 cut(s) 75
NciI CCSGG 3 cut(s) 119, 120, 138
NdeII GATC 1 cut(s) 128
NlaIII CATG 1 cut(s) 30
PctI GAATGC 1 cut(s) 106
PfeI GAWTC 1 cut(s) 64
PspPI GGNCC 1 cut(s) 134
PsuI RGATCY 1 cut(s) 128
SaqAI TTAA 1 cut(s) 176
Sau3AI GATC 1 cut(s) 128
Sau96I GGNCC 1 cut(s) 134
ScrFI CCNGG 3 cut(s) 119, 120, 138
SetI ASST 2 cut(s) 112, 153
SinI GGWCC 1 cut(s) 134
SmaI CCCGGG 1 cut(s) 120
Sse9I AATT 1 cut(s) 156
SsiI CCGC 1 cut(s) 73
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 3 cut(s) 117, 118, 136
TasI AATT 1 cut(s) 156
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 1 cut(s) 102
TspDTI ATGAA 1 cut(s) 77
TspMI CCCGGG 1 cut(s) 118
TspRI CASTG 1 cut(s) 102
VpaK11BI GGWCC 1 cut(s) 134
XmaI CCCGGG 1 cut(s) 118
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.