Rw2G037050

complex I intermediate-associated protein 30

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005050
Physical Location & Seq
Reverse (-)
60994382 .. 60998056
3675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G037050.1

Sequence Viewer

Length: 687 bp
ATGATATTTGTGGAAAGAGAAATGTCCAGGTTTCGAGCACTGTTGCAAGCAACCAAGAAAGCTCTCACATGGAATGTCGAAGACCTGGTGCCTCCCAGTGAGAGATATATATTTAATTTCGGTTCAAAGGAAGAGCTGAAGAAGTGGCATTTATATTCTGATTCTGAATATGGAGGGTTGTCCTCAGCATCTTTAGAGATATCAGATACTGGAAATGGACTCAATGGAATTTTCTCGGGTAACCTTTCTTCTGATTTTGCTGAGGGTTCAAAGTGGAAGATGAACAGGAGTGGCTTTTGTGGAATGCGGTCCAAAAAGTTTAATGGCTTCATTGATTTGGATGCATATGATACCATATCACTAAAAGTTAAAGGAGACGGAAGATCCTACATATCTACGATTTATACAGAAAACTGGGTAAATTCCCCTGGACAAGATGAAGATAATTCATGGCAGGCTTTTGTTTTTGTACCAAAAGACAACTGGTACATTGCAAAGATTCCTCTTTCTCGTTATCTACCAACATGGAGAGGGAGTGTTATAGACGCAGAGATGGAAATGAATCCTGCCCGCGTTGTTGGTATGTCTCTCTCAGTGAATGCAGAAGGTGGTGTCCCGGGTGCTAGATCTGGTCCGGGTGATTTCAAGCTTGAAATTGATTGGATAAAGGCTTTAAGAACAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
CIA30

Protein Analysis

228

Amino Acids

25.65

Weight (kDa)

5.43

Isoelectric Point (pI)

34.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CIA30 PF08547 38 - 219 3.3e-43 Complex I intermediate-associated protein 30 (CIA30)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 88
AccII CGCG 1 cut(s) 573
AciI CCGC 2 cut(s) 307, 571
AclWI GGATC 1 cut(s) 378
AcsI RAATTY 2 cut(s) 228, 421
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 2 cut(s) 471, 488
AgsI TTSAA 4 cut(s) 126, 270, 646, 653
AjnI CCWGG 3 cut(s) 26, 84, 427
AluBI AGCT 3 cut(s) 62, 136, 649
AluI AGCT 3 cut(s) 62, 136, 649
Alw21I GWGCWC 1 cut(s) 40
Alw26I GTCTC 2 cut(s) 369, 591
AlwI GGATC 1 cut(s) 378
AlwNI CAGNNNCTG 1 cut(s) 209
Ama87I CYCGRG 2 cut(s) 235, 616
ApoI RAATTY 2 cut(s) 228, 421
AspS9I GGNCC 2 cut(s) 309, 632
AsuC2I CCSGG 3 cut(s) 617, 618, 636
AsuHPI GGTGA 1 cut(s) 650
AvaI CYCGRG 2 cut(s) 235, 616
AvaII GGWCC 2 cut(s) 309, 632
BanI GGYRCC 1 cut(s) 88
BarI GAAGNNNNNNTAC 2 cut(s) 232, 264
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 40
BbvCI CCTCAGC 2 cut(s) 184, 261
BccI CCATC 1 cut(s) 547
BciT130I CCWGG 3 cut(s) 28, 86, 429
BcnI CCSGG 3 cut(s) 617, 618, 636
BcoDI GTCTC 2 cut(s) 369, 591
BfaI CTAG 1 cut(s) 624
BglII AGATCT 1 cut(s) 626
Bme1390I CCNGG 6 cut(s) 28, 86, 429, 617, 618, 636
Bme18I GGWCC 2 cut(s) 309, 632
BmeT110I CYCGRG 2 cut(s) 235, 616
BmgT120I GGNCC 2 cut(s) 309, 632
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 6 cut(s) 28, 86, 429, 617, 618, 636
BmrI ACTGGG 2 cut(s) 90, 424
BmsI GCATC 2 cut(s) 197, 331
BmuI ACTGGG 2 cut(s) 90, 424
BpiI GAAGAC 1 cut(s) 87
Bpu10I CCTNAGC 2 cut(s) 184, 261
BpuMI CCSGG 3 cut(s) 617, 618, 636
BsaJI CCNNGG 2 cut(s) 427, 616
BsaXI ACNNNNNCTCC 2 cut(s) 520, 550
Bse1I ACTGG 4 cut(s) 96, 214, 419, 488
Bse3DI GCAATG 1 cut(s) 489
BseBI CCWGG 3 cut(s) 28, 86, 429
BseDI CCNNGG 2 cut(s) 427, 616
BseGI GGATG 1 cut(s) 346
BseMI GCAATG 1 cut(s) 489
BseMII CTCAG 3 cut(s) 198, 252, 606
BseNI ACTGG 4 cut(s) 96, 214, 419, 488
Bsh1236I CGCG 1 cut(s) 573
BshNI GGYRCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 40
BsiHKCI CYCGRG 2 cut(s) 235, 616
BsiSI CCGG 2 cut(s) 617, 635
BslFI GGGAC 1 cut(s) 599
BsmAI GTCTC 2 cut(s) 369, 591
BsmBI CGTCTC 1 cut(s) 369
BsmFI GGGAC 1 cut(s) 599
BsmI GAATGC 2 cut(s) 309, 604
BsoBI CYCGRG 2 cut(s) 235, 616
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 2 cut(s) 383, 626
BspACI CCGC 2 cut(s) 307, 571
BspCNI CTCAG 3 cut(s) 197, 253, 605
BspFNI CGCG 1 cut(s) 573
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 1 cut(s) 378
BspQI GCTCTTC 1 cut(s) 126
BspT107I GGYRCC 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 489
BsrI ACTGG 4 cut(s) 96, 214, 419, 488
BssECI CCNNGG 2 cut(s) 427, 616
BssMI GATC 2 cut(s) 383, 626
Bst2UI CCWGG 3 cut(s) 28, 86, 429
Bst4CI ACNGT 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 126
BstC8I GCNNGC 3 cut(s) 48, 456, 571
BstDEI CTNAG 3 cut(s) 184, 261, 592
BstEII GGTNACC 1 cut(s) 239
BstF5I GGATG 1 cut(s) 346
BstFNI CGCG 1 cut(s) 573
BstKTI GATC 2 cut(s) 386, 629
BstMAI GTCTC 2 cut(s) 369, 591
BstMBI GATC 2 cut(s) 383, 626
BstNI CCWGG 3 cut(s) 28, 86, 429
BstPI GGTNACC 1 cut(s) 239
BstSCI CCNGG 6 cut(s) 26, 84, 427, 615, 616, 634
BstUI CGCG 1 cut(s) 573
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 2 cut(s) 383, 626
BstYI RGATCY 2 cut(s) 383, 626
BtsCI GGATG 1 cut(s) 346
BtsIMutI CAGTG 3 cut(s) 38, 103, 600
Cac8I GCNNGC 3 cut(s) 48, 456, 571
CaiI CAGNNNCTG 1 cut(s) 209
Cfr13I GGNCC 2 cut(s) 309, 632
Cfr9I CCCGGG 1 cut(s) 616
CseI GACGC 1 cut(s) 554
CsiI ACCWGGT 1 cut(s) 84
Csp6I GTAC 2 cut(s) 470, 487
CviAII CATG 3 cut(s) 69, 450, 525
CviJI RGCY 7 cut(s) 62, 136, 294, 327, 458, 649, 671
CviKI_1 RGCY 7 cut(s) 62, 136, 294, 327, 458, 649, 671
CviQI GTAC 2 cut(s) 470, 487
DdeI CTNAG 3 cut(s) 184, 261, 592
DpnI GATC 2 cut(s) 385, 628
DpnII GATC 2 cut(s) 383, 626
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Eco32I GATATC 1 cut(s) 201
Eco47I GGWCC 2 cut(s) 309, 632
Eco57I CTGAAG 1 cut(s) 158
Eco88I CYCGRG 2 cut(s) 235, 616
Eco91I GGTNACC 1 cut(s) 239
EcoO65I GGTNACC 1 cut(s) 239
EcoRII CCWGG 3 cut(s) 26, 84, 427
EcoRV GATATC 1 cut(s) 201
EcoT22I ATGCAT 1 cut(s) 346
Esp3I CGTCTC 1 cut(s) 369
FaeI CATG 3 cut(s) 72, 453, 528
FaqI GGGAC 1 cut(s) 599
FatI CATG 3 cut(s) 68, 449, 524
FauI CCCGC 1 cut(s) 578
FauNDI CATATG 1 cut(s) 346
FokI GGATG 1 cut(s) 353
FspBI CTAG 1 cut(s) 624
HapII CCGG 2 cut(s) 617, 635
HgaI GACGC 1 cut(s) 554
Hin1II CATG 3 cut(s) 72, 453, 528
HindIII AAGCTT 1 cut(s) 647
HinfI GANTC 4 cut(s) 161, 219, 499, 562
HpaII CCGG 2 cut(s) 617, 635
HphI GGTGA 1 cut(s) 650
Hpy188I TCNGA 4 cut(s) 160, 166, 205, 253
HpyAV CCTTC 1 cut(s) 599
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4V TGCA 4 cut(s) 46, 344, 494, 602
HpyF3I CTNAG 3 cut(s) 184, 261, 592
Hsp92II CATG 3 cut(s) 72, 453, 528
Kzo9I GATC 2 cut(s) 383, 626
LguI GCTCTTC 1 cut(s) 126
LweI GCATC 2 cut(s) 197, 331
MabI ACCWGGT 1 cut(s) 84
MaeI CTAG 1 cut(s) 624
MaeIII GTNAC 1 cut(s) 239
MalI GATC 2 cut(s) 385, 628
MboI GATC 2 cut(s) 383, 626
MboII GAAGA 7 cut(s) 92, 143, 151, 240, 289, 393, 452
MflI RGATCY 2 cut(s) 383, 626
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 5 cut(s) 115, 228, 421, 445, 654
MlyI GAGTC 1 cut(s) 213
MnlI CCTC 6 cut(s) 102, 167, 193, 256, 513, 524
Mph1103I ATGCAT 1 cut(s) 346
MseI TTAA 4 cut(s) 114, 321, 369, 674
MspI CCGG 2 cut(s) 617, 635
MspR9I CCNGG 6 cut(s) 28, 86, 429, 617, 618, 636
Mva1269I GAATGC 2 cut(s) 309, 604
MvaI CCWGG 3 cut(s) 28, 86, 429
MvnI CGCG 1 cut(s) 573
NciI CCSGG 3 cut(s) 617, 618, 636
NdeI CATATG 1 cut(s) 346
NdeII GATC 2 cut(s) 383, 626
NlaIII CATG 3 cut(s) 72, 453, 528
NlaIV GGNNCC 1 cut(s) 90
NsiI ATGCAT 1 cut(s) 346
PciSI GCTCTTC 1 cut(s) 126
PctI GAATGC 2 cut(s) 309, 604
PfeI GAWTC 3 cut(s) 161, 499, 562
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
Psp6I CCWGG 3 cut(s) 26, 84, 427
PspEI GGTNACC 1 cut(s) 239
PspGI CCWGG 3 cut(s) 26, 84, 427
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 2 cut(s) 309, 632
PstNI CAGNNNCTG 1 cut(s) 209
PsuI RGATCY 2 cut(s) 383, 626
RsaI GTAC 2 cut(s) 471, 488
RsaNI GTAC 2 cut(s) 470, 487
SapI GCTCTTC 1 cut(s) 126
SaqAI TTAA 4 cut(s) 114, 321, 369, 674
Sau3AI GATC 2 cut(s) 383, 626
Sau96I GGNCC 2 cut(s) 309, 632
SchI GAGTC 1 cut(s) 213
ScrFI CCNGG 6 cut(s) 28, 86, 429, 617, 618, 636
SduI GDGCHC 1 cut(s) 40
SetI ASST 7 cut(s) 32, 64, 87, 138, 246, 610, 651
SexAI ACCWGGT 1 cut(s) 84
SfaNI GCATC 2 cut(s) 197, 331
SinI GGWCC 2 cut(s) 309, 632
SmaI CCCGGG 1 cut(s) 618
Sse9I AATT 5 cut(s) 115, 228, 421, 445, 654
SsiI CCGC 2 cut(s) 307, 571
SspMI CTAG 1 cut(s) 624
StyD4I CCNGG 6 cut(s) 26, 84, 427, 615, 616, 634
TaaI ACNGT 1 cut(s) 42
TaqI TCGA 2 cut(s) 34, 78
TasI AATT 5 cut(s) 115, 228, 421, 445, 654
TfiI GAWTC 3 cut(s) 161, 499, 562
Tru1I TTAA 4 cut(s) 114, 321, 369, 674
Tru9I TTAA 4 cut(s) 114, 321, 369, 674
TscAI CASTG 3 cut(s) 45, 103, 600
TspDTI ATGAA 5 cut(s) 296, 319, 438, 453, 575
TspGWI ACGGA 1 cut(s) 393
TspMI CCCGGG 1 cut(s) 616
TspRI CASTG 3 cut(s) 45, 103, 600
VpaK11BI GGWCC 2 cut(s) 309, 632
XapI RAATTY 2 cut(s) 228, 421
XcmI CCANNNNNNNNNTGG 1 cut(s) 480
XmaI CCCGGG 1 cut(s) 616
XspI CTAG 1 cut(s) 624
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.