AT1G72420

intermediate-associated protein 30

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005050
Physical Location & Seq
Reverse (-)
27261087 .. 27263828
2742 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72420.4

Sequence Viewer

Length: 687 bp
ATGTCACGGTTTAGATCATTGTGGCAAGCCTCGGTGAATGCAACAAAGAAGGCTCTAACGTGGGAACTCGAAGAATGGGTACCCCCTGTAGAGAAGTGTATATTCAAGTTCAATTCAAAAGAAGACCTTAAGACATGGCACCTATACTCTGATTCTGAATATGGAGGATTATCTTCGGCTTCGTTGGAAATTAAAGATGGAGGAAATCGATCAGATTGCAATGGTGTTTTCTCTGGGAACCTCTCTACGGATATGAGGGAAGGTTCAAAATGGAATATCAATCGGAGTGGTTTCTGTGGAATGCGGTCAAAGAAGTTTGATGGCTTTATTGATCTCGAAGGGTATGATTCCATAGCCCTGAGGCTCAAAGGAGATGGAAGGTGCTATATTTCTACTATATATACTGAGAACTGGGTGAACTCGCCAGGACAAGCAGAAGACAACTCATGGCAGGCTTTTGTTTTTGCTCCAAAGGGAAACTGGTATACAGCTAAGGTTCCTCTTACTCGCTACTTACCAACATGGAAAGGAAACGTGATAGATGCAGAAATGGAGATGAATCCAGGTCATGTTGTTGGTATGTCTCTATCCGTTAACGCACAAGGAGGTGGTTTCATTGGAGCTAAATCAGGCGCAGGCGATTTCCAAGTCGAAATTGACTGGATCAAAGCAGTGAGGATGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
CIA30

Protein Analysis

228

Amino Acids

25.49

Weight (kDa)

6.17

Isoelectric Point (pI)

34.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CIA30 PF08547 24 - 208 1.6e-41 Complex I intermediate-associated protein 30 (CIA30)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 79
AccB1I GGYRCC 2 cut(s) 79, 138
AccI GTMKAC 1 cut(s) 485
AciI CCGC 1 cut(s) 304
AclWI GGATC 1 cut(s) 671
AfaI GTAC 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 247
AflII CTTAAG 1 cut(s) 128
AgsI TTSAA 4 cut(s) 106, 112, 117, 267
AjnI CCWGG 2 cut(s) 424, 562
AluBI AGCT 2 cut(s) 491, 623
AluI AGCT 2 cut(s) 491, 623
Alw26I GTCTC 1 cut(s) 588
AlwI GGATC 1 cut(s) 671
Asp718I GGTACC 1 cut(s) 79
AspLEI GCGC 1 cut(s) 635
AsuHPI GGTGA 2 cut(s) 46, 427
AxyI CCTNAGG 1 cut(s) 359
BanI GGYRCC 2 cut(s) 79, 138
BarI GAAGNNNNNNTAC 2 cut(s) 63, 95
BbsI GAAGAC 2 cut(s) 129, 444
BccI CCATC 3 cut(s) 191, 314, 368
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BciT130I CCWGG 2 cut(s) 426, 564
BcoDI GTCTC 1 cut(s) 588
BfmI CTRYAG 1 cut(s) 87
BfrI CTTAAG 1 cut(s) 128
Bme1390I CCNGG 2 cut(s) 426, 564
BmiI GGNNCC 4 cut(s) 81, 140, 239, 498
BmrFI CCNGG 2 cut(s) 426, 564
BmrI ACTGGG 1 cut(s) 421
BmsI GCATC 2 cut(s) 532, 669
BmuI ACTGGG 1 cut(s) 421
BpiI GAAGAC 2 cut(s) 129, 444
Bpu10I CCTNAGC 1 cut(s) 492
Bsa29I ATCGAT 1 cut(s) 208
BsaJI CCNNGG 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse1I ACTGG 3 cut(s) 416, 485, 665
Bse21I CCTNAGG 1 cut(s) 359
Bse3DI GCAATG 1 cut(s) 226
BseBI CCWGG 2 cut(s) 426, 564
BseCI ATCGAT 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 1 cut(s) 684
BseLI CCNNNNNNNGG 1 cut(s) 247
BseMI GCAATG 1 cut(s) 226
BseMII CTCAG 2 cut(s) 350, 396
BseNI ACTGG 3 cut(s) 416, 485, 665
BshNI GGYRCC 2 cut(s) 79, 138
BshVI ATCGAT 1 cut(s) 208
BslI CCNNNNNNNGG 1 cut(s) 247
BsmAI GTCTC 1 cut(s) 588
BsmI GAATGC 2 cut(s) 43, 306
Bsp143I GATC 4 cut(s) 14, 209, 331, 663
BspACI CCGC 1 cut(s) 304
BspCNI CTCAG 2 cut(s) 351, 397
BspDI ATCGAT 1 cut(s) 208
BspLI GGNNCC 4 cut(s) 81, 140, 239, 498
BspPI GGATC 1 cut(s) 671
BspT107I GGYRCC 2 cut(s) 79, 138
BspTI CTTAAG 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 226
BsrI ACTGG 3 cut(s) 416, 485, 665
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 4 cut(s) 14, 209, 331, 663
BssNAI GTATAC 1 cut(s) 486
Bst1107I GTATAC 1 cut(s) 486
Bst2UI CCWGG 2 cut(s) 426, 564
Bst4CI ACNGT 1 cut(s) 9
BstAFI CTTAAG 1 cut(s) 128
BstC8I GCNNGC 3 cut(s) 27, 453, 637
BstDEI CTNAG 3 cut(s) 359, 405, 492
BstF5I GGATG 1 cut(s) 684
BstHHI GCGC 1 cut(s) 635
BstKTI GATC 4 cut(s) 17, 212, 334, 666
BstMAI GTCTC 1 cut(s) 588
BstMBI GATC 4 cut(s) 14, 209, 331, 663
BstNI CCWGG 2 cut(s) 426, 564
BstSCI CCNGG 2 cut(s) 424, 562
BstSFI CTRYAG 1 cut(s) 87
BstV2I GAAGAC 2 cut(s) 129, 444
BstZ17I GTATAC 1 cut(s) 486
Bsu15I ATCGAT 1 cut(s) 208
Bsu36I CCTNAGG 1 cut(s) 359
BsuTUI ATCGAT 1 cut(s) 208
BtsCI GGATG 1 cut(s) 684
BtsI GCAGTG 1 cut(s) 678
BtsIMutI CAGTG 1 cut(s) 678
Cac8I GCNNGC 3 cut(s) 27, 453, 637
CfoI GCGC 1 cut(s) 635
ClaI ATCGAT 1 cut(s) 208
Csp6I GTAC 1 cut(s) 80
CspCI CAANNNNNGTGG 2 cut(s) 268, 303
CviAII CATG 5 cut(s) 135, 447, 522, 569, 684
CviJI RGCY 9 cut(s) 29, 53, 179, 324, 356, 364, 455, 491, 623
CviKI_1 RGCY 9 cut(s) 29, 53, 179, 324, 356, 364, 455, 491, 623
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 3 cut(s) 359, 405, 492
DpnI GATC 4 cut(s) 16, 211, 333, 665
DpnII GATC 4 cut(s) 14, 209, 331, 663
Eco81I CCTNAGG 1 cut(s) 359
EcoRII CCWGG 2 cut(s) 424, 562
FaeI CATG 5 cut(s) 138, 450, 525, 572, 687
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FatI CATG 5 cut(s) 134, 446, 521, 568, 683
FblI GTMKAC 1 cut(s) 485
GlaI GCGC 1 cut(s) 634
HhaI GCGC 1 cut(s) 635
Hin1II CATG 5 cut(s) 138, 450, 525, 572, 687
Hin6I GCGC 1 cut(s) 633
HinP1I GCGC 1 cut(s) 633
HincII GTYRAC 1 cut(s) 595
HindII GTYRAC 1 cut(s) 595
HinfI GANTC 3 cut(s) 152, 347, 559
HpaI GTTAAC 1 cut(s) 595
HphI GGTGA 2 cut(s) 46, 427
Hpy166II GTNNAC 3 cut(s) 418, 486, 595
Hpy188I TCNGA 4 cut(s) 151, 157, 214, 285
Hpy188III TCNNGA 1 cut(s) 335
Hpy8I GTNNAC 3 cut(s) 418, 486, 595
HpyAV CCTTC 4 cut(s) 43, 254, 332, 372
HpyCH4III ACNGT 1 cut(s) 9
HpyCH4IV ACGT 2 cut(s) 59, 534
HpyCH4V TGCA 3 cut(s) 41, 219, 545
HpyF3I CTNAG 3 cut(s) 359, 405, 492
HpySE526I ACGT 2 cut(s) 59, 534
Hsp92II CATG 5 cut(s) 138, 450, 525, 572, 687
HspAI GCGC 1 cut(s) 633
KpnI GGTACC 1 cut(s) 83
KspAI GTTAAC 1 cut(s) 595
Kzo9I GATC 4 cut(s) 14, 209, 331, 663
LmnI GCTCC 2 cut(s) 472, 620
LweI GCATC 2 cut(s) 532, 669
MaeII ACGT 2 cut(s) 59, 534
MaeIII GTNAC 1 cut(s) 3
MalI GATC 4 cut(s) 16, 211, 333, 665
MboI GATC 4 cut(s) 14, 209, 331, 663
MboII GAAGA 4 cut(s) 83, 134, 165, 449
MluCI AATT 3 cut(s) 112, 189, 654
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 9 cut(s) 40, 158, 194, 249, 251, 354, 510, 599, 669
MseI TTAA 3 cut(s) 129, 192, 594
MspCI CTTAAG 1 cut(s) 128
MspR9I CCNGG 2 cut(s) 426, 564
Mva1269I GAATGC 2 cut(s) 43, 306
MvaI CCWGG 2 cut(s) 426, 564
NdeII GATC 4 cut(s) 14, 209, 331, 663
NlaIII CATG 5 cut(s) 138, 450, 525, 572, 687
NlaIV GGNNCC 4 cut(s) 81, 140, 239, 498
NmuCI GTSAC 1 cut(s) 3
PctI GAATGC 2 cut(s) 43, 306
PfeI GAWTC 3 cut(s) 152, 347, 559
Psp6I CCWGG 2 cut(s) 424, 562
PspGI CCWGG 2 cut(s) 424, 562
PspN4I GGNNCC 4 cut(s) 81, 140, 239, 498
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SaqAI TTAA 3 cut(s) 129, 192, 594
Sau3AI GATC 4 cut(s) 14, 209, 331, 663
ScrFI CCNGG 2 cut(s) 426, 564
SfaNI GCATC 2 cut(s) 532, 669
SfcI CTRYAG 1 cut(s) 87
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 3 cut(s) 112, 189, 654
SsiI CCGC 1 cut(s) 304
StyD4I CCNGG 2 cut(s) 424, 562
TaaI ACNGT 1 cut(s) 9
TaiI ACGT 2 cut(s) 62, 537
TaqI TCGA 4 cut(s) 69, 208, 336, 651
TasI AATT 3 cut(s) 112, 189, 654
TfiI GAWTC 3 cut(s) 152, 347, 559
Tru1I TTAA 3 cut(s) 129, 192, 594
Tru9I TTAA 3 cut(s) 129, 192, 594
TscAI CASTG 1 cut(s) 678
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 2 cut(s) 572, 604
TspGWI ACGGA 2 cut(s) 263, 580
TspRI CASTG 1 cut(s) 678
Vha464I CTTAAG 1 cut(s) 128
XcmI CCANNNNNNNNNTGG 1 cut(s) 477
XmiI GTMKAC 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.