Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007944

Physical Location & Seq

Genomic Coordinates Reverse (-)

5960471 .. 5962481

Gene Structure 2011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G17400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGAAGTTCTTCGGGTGGATGCAGAACAAGCTTAATGGGGATCATAACAGAACAAGCACTTCCTCTGCTTCTTCTCATCATGTGAAGCAAGAACCAAGAGAGGAGTTTAGCGACTGGCCTCACGCGCTGCTTGCTATTGGAACATTCGGTACAACAAGCAATAGTGTGAGCGAAAACGAGAGCAAGAATGTTCATGAAGAGATTGAAGCGGAGAAGAAGTGTACGGCACAATCCGAGCAAGAAGAAGAGCCTTCTTCCTCTGTCAATCTTGAGGATTTCACTCCTGAAGAGGTTGGAAAGTTGCAGAAAGAGTTGATGAAGCTCTTGTCAAGAACTAAGAAAAGGAAGTCTGATGTGAATAGAGAGCTCATGAAAAATCTTCCTTTAGATAGATTCTTGAACTGTCCATCGAGTTTAGAGGTGGATAGGCGAATCAGCAATGCGCTTAGCGCTGTTGTGGATTCGTCAGAGGAGAATAAGGAGGAAGATATGGAGCGAACGATTAACGTTATTCTAGGTAGATGCAAAGAGATATCAATAGAGAGTAAGAATAACAAGAAGAAGAGAGACATAAGCAAGAACTCTGTCTCATATCTTTTCAAGAAGATTTTTGTCTGCGCAGATGGGATTTCTACAGCCCCAAGCCCTAGCTTGAGAGACACGCTTCAAGAATCAAGAATGGAGAAGTTGTTGAAGATGATGCTCCATAAGAAGATTAATGCTCAAGCCTCCTCGAAACCAACATCATTGACAACAAAGAGATACTTGCAAGACAAGAAACAGCTCTCACTGAAGAGTGAGGAAGAAGAAACTAGCGAAAGAAGAAGTAGTAGCGATGGATATAAATGGGTCAAAACAGATTCTGATTTCATAGTTCTCGAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

295

Amino Acids

33.71

Weight (kDa)

7.03

Isoelectric Point (pI)

66.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17400 AT1G17400 AT1G17400 AT1G72490 AT1G72490 AT1G72490
fragaria_vesca	FvH4_6g35070
malus_domestica	MD09G1179400.v1.1 MD17G1165000.v1.1
prunus_persica	Prupe.3G038300_v2.0.a1 Prupe.3G038300_v2.0.a1
pyrus_communis	pycom17g15790
rosa_chinensis	RchiOBHm_Chr2g0146241
rosa_laevigata	RLG00000020189
rosa_multiflora	Rmu_sc0002054.1_g000019
rosa_roxburghii	Rroxscaffold_152G00434940 Rroxscaffold_2G00100210
rosa_rugosa	Rorug02G0393800 Rorug02G0393900.1
rosa_samantha	Rh2AG450100 Rh2BG462300 Rh2CG436900 Rh2DG471500
rosa_wichuraiana	Rw2G036730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	619
AccII	CGCG	1 cut(s)	125
AciI	CCGC	1 cut(s)	209
AclI	AACGTT	1 cut(s)	507
AclWI	GGATC	1 cut(s)	48
AcuI	CTGAAG	2 cut(s)	306, 812
AfaI	GTAC	2 cut(s)	151, 223
AfeI	AGCGCT	1 cut(s)	451
AgsI	TTSAA	5 cut(s)	206, 400, 601, 668, 694
AluBI	AGCT	5 cut(s)	31, 322, 367, 651, 784
AluI	AGCT	5 cut(s)	31, 322, 367, 651, 784
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	3 cut(s)	561, 592, 651
AlwI	GGATC	1 cut(s)	48
AlwNI	CAGNNNCTG	1 cut(s)	863
Ama87I	CYCGRG	1 cut(s)	878
Aor51HI	AGCGCT	1 cut(s)	451
AoxI	GGCC	1 cut(s)	116
ApeKI	GCWGC	1 cut(s)	127
AseI	ATTAAT	1 cut(s)	717
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	4 cut(s)	127, 445, 452, 620
AvaI	CYCGRG	1 cut(s)	878
BanII	GRGCYC	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	3 cut(s)	415, 617, 830
BceAI	ACGGC	1 cut(s)	240
BcoDI	GTCTC	3 cut(s)	561, 592, 651
BfaI	CTAG	3 cut(s)	515, 648, 813
BfmI	CTRYAG	1 cut(s)	633
BfoI	RGCGCY	1 cut(s)	453
BisI	GCNGC	1 cut(s)	128
BlpI	GCTNAGC	1 cut(s)	446
BlsI	GCNGC	1 cut(s)	129
BmeT110I	CYCGRG	1 cut(s)	878
BmsI	GCATC	3 cut(s)	9, 512, 690
Bpu1102I	GCTNAGC	1 cut(s)	446
BpuEI	CTTGAG	3 cut(s)	290, 673, 708
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 674, 704
Bse1I	ACTGG	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	445
BseGI	GGATG	1 cut(s)	24
BseMI	GCAATG	1 cut(s)	445
BseNI	ACTGG	1 cut(s)	119
BseRI	GAGGAG	3 cut(s)	116, 485, 721
BseXI	GCAGC	1 cut(s)	114
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	369
BsiHKCI	CYCGRG	1 cut(s)	878
BsmAI	GTCTC	3 cut(s)	561, 592, 651
BsnI	GGCC	1 cut(s)	118
BsoBI	CYCGRG	1 cut(s)	878
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	1 cut(s)	40
Bsp1720I	GCTNAGC	1 cut(s)	446
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	1 cut(s)	118
BspFNI	CGCG	1 cut(s)	125
BspHI	TCATGA	2 cut(s)	193, 369
BspPI	GGATC	1 cut(s)	48
BspQI	GCTCTTC	1 cut(s)	240
BsrDI	GCAATG	1 cut(s)	445
BsrI	ACTGG	1 cut(s)	119
BssMI	GATC	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	404
Bst6I	CTCTTC	5 cut(s)	192, 240, 282, 557, 788
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	336, 446
BstF5I	GGATG	1 cut(s)	24
BstFNI	CGCG	1 cut(s)	125
BstH2I	RGCGCY	1 cut(s)	453
BstHHI	GCGC	4 cut(s)	127, 445, 452, 620
BstKTI	GATC	1 cut(s)	43
BstMAI	GTCTC	3 cut(s)	561, 592, 651
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 124, 131, 449
BstSFI	CTRYAG	1 cut(s)	633
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	118
BtgZI	GCGATG	1 cut(s)	849
BtsCI	GGATG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	788
Cac8I	GCNNGC	1 cut(s)	132
CaiI	CAGNNNCTG	1 cut(s)	863
CciI	TCATGA	2 cut(s)	193, 369
CfoI	GCGC	4 cut(s)	127, 445, 452, 620
Csp6I	GTAC	2 cut(s)	150, 222
CviAII	CATG	3 cut(s)	80, 194, 370
CviQI	GTAC	2 cut(s)	150, 222
DdeI	CTNAG	2 cut(s)	336, 446
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eam1104I	CTCTTC	5 cut(s)	192, 240, 282, 557, 788
EarI	CTCTTC	5 cut(s)	192, 240, 282, 557, 788
Ecl136II	GAGCTC	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	369
Eco32I	GATATC	1 cut(s)	534
Eco47III	AGCGCT	1 cut(s)	451
Eco53kI	GAGCTC	1 cut(s)	367
Eco57I	CTGAAG	2 cut(s)	306, 812
Eco88I	CYCGRG	1 cut(s)	878
EcoICRI	GAGCTC	1 cut(s)	367
EcoRV	GATATC	1 cut(s)	534
EcoT38I	GRGCYC	1 cut(s)	369
FaeI	CATG	3 cut(s)	83, 197, 373
FalI	AAGNNNNNCTT	2 cut(s)	749, 781
FatI	CATG	3 cut(s)	79, 193, 369
Fnu4HI	GCNGC	1 cut(s)	128
FokI	GGATG	1 cut(s)	31
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	1 cut(s)	128
FspBI	CTAG	3 cut(s)	515, 648, 813
FspI	TGCGCA	1 cut(s)	619
GlaI	GCGC	4 cut(s)	126, 444, 451, 619
GluI	GCNGC	1 cut(s)	128
HaeII	RGCGCY	1 cut(s)	453
HaeIII	GGCC	1 cut(s)	118
HhaI	GCGC	4 cut(s)	127, 445, 452, 620
Hin1II	CATG	3 cut(s)	83, 197, 373
Hin6I	GCGC	4 cut(s)	125, 443, 450, 618
HinP1I	GCGC	4 cut(s)	125, 443, 450, 618
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	5 cut(s)	393, 432, 461, 671, 860
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	4 cut(s)	235, 352, 469, 865
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	1 cut(s)	261
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	4 cut(s)	22, 304, 525, 769
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 124, 131, 449
HpyF3I	CTNAG	2 cut(s)	336, 446
HpySE526I	ACGT	1 cut(s)	507
Hsp92II	CATG	3 cut(s)	83, 197, 373
HspAI	GCGC	4 cut(s)	125, 443, 450, 618
Kzo9I	GATC	1 cut(s)	40
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	2 cut(s)	493, 708
LpnPI	CCDG	2 cut(s)	100, 297
Lsp1109I	GCAGC	1 cut(s)	114
LweI	GCATC	3 cut(s)	9, 512, 690
MaeI	CTAG	3 cut(s)	515, 648, 813
MaeII	ACGT	1 cut(s)	507
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	369
MmeI	TCCRAC	1 cut(s)	274
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	3 cut(s)	33, 504, 717
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	4 cut(s)	28, 124, 131, 449
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	3 cut(s)	83, 197, 373
NsbI	TGCGCA	1 cut(s)	619
PaeR7I	CTCGAG	1 cut(s)	878
PagI	TCATGA	2 cut(s)	193, 369
PciSI	GCTCTTC	1 cut(s)	240
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	5 cut(s)	393, 432, 461, 671, 860
PkrI	GCNGC	1 cut(s)	129
PshBI	ATTAAT	1 cut(s)	717
Psp124BI	GAGCTC	1 cut(s)	369
Psp1406I	AACGTT	1 cut(s)	507
PsrI	GAACNNNNNNTAC	2 cut(s)	133, 165
PstNI	CAGNNNCTG	1 cut(s)	863
RsaI	GTAC	2 cut(s)	151, 223
RsaNI	GTAC	2 cut(s)	150, 222
SacI	GAGCTC	1 cut(s)	369
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	3 cut(s)	33, 504, 717
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	1 cut(s)	40
SduI	GDGCHC	1 cut(s)	369
SetI	ASST	9 cut(s)	33, 294, 324, 369, 423, 510, 520, 653, 786
SfaNI	GCATC	3 cut(s)	9, 512, 690
SfcI	CTRYAG	1 cut(s)	633
Sfr274I	CTCGAG	1 cut(s)	878
SlaI	CTCGAG	1 cut(s)	878
SmlI	CTYRAG	4 cut(s)	269, 652, 723, 878
SmoI	CTYRAG	4 cut(s)	269, 652, 723, 878
SsiI	CCGC	1 cut(s)	209
SspMI	CTAG	3 cut(s)	515, 648, 813
SstI	GAGCTC	1 cut(s)	369
TaaI	ACNGT	1 cut(s)	404
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	3 cut(s)	410, 734, 879
TfiI	GAWTC	5 cut(s)	393, 432, 461, 671, 860
Tru1I	TTAA	3 cut(s)	33, 504, 717
Tru9I	TTAA	3 cut(s)	33, 504, 717
TscAI	CASTG	1 cut(s)	795
TseI	GCWGC	1 cut(s)	127
TspDTI	ATGAA	6 cut(s)	17, 182, 210, 332, 386, 859
TspRI	CASTG	1 cut(s)	795
VspI	ATTAAT	1 cut(s)	717
XhoI	CTCGAG	1 cut(s)	878
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	3 cut(s)	515, 648, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.