Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007944

Physical Location & Seq

Genomic Coordinates Forward (+)

65396245 .. 65398481

Gene Structure 2237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG462300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAGGCTTTTCGGTTGGGTGCAAGATAAGCTTAATGGGAAGCAGGGGAACAAGAAACCAAATACAGCTTCGACTAGTACCCATCATGTAAAACCAGAGCCTCGTGAAGAATTCAATGACTGGCCTCATGGTTTACTAGCAATCGGAACTTTTGGAAACAACAATTTGAAAGAGAATACTGATCATCGAAGCCAAAATATTCAGGAAGAACCATCTTCATCAGATGAAATACTAGAAAATTTCACTCCTGAAGAAGTTGGTAAGTTACATAAAGAGTTAACGAAACTCTTGACACGAAAACCAGACATTGAAAAGGAAATTGCAGCTCTTCCGTTGGACAGATTTCTAAATTGTCCATCAAGCTTGGAGGTTGATAGGAGAACAAGCAACGTGCTTTGCTCTGATTCAGATGATCCCAAAGATGAAGATATTGAGAAAACCATTAGTGTTATACTTGGTAGATGCAAAGACATTTGTGCAGATAGTAACAAGAAGGCGATTGGGAAGAAATCACTTTCTTTTCTTCTCAAGAAGATGTTTGTTTGTAGAAGTGGATTTGCACCAGCACCAAGTTTGAGAGATACATTTCAAGAGTCAAGAATGGAGAAGTTTTTGAGGCTAATGCTTAACAAGAAGATCATCAATCCGCAAAGTTCTTCTCGAGCATCATCAATGAAGAAATACCTTGAGGATACTAGACAAAGTCCAACCAAGAAGGGAAATAATAATGAAGAAAATACAAAAGAGAAAATCAATGATGGATGTAAATGGGTCAAGACTGATTCTGAATATATATTATTACAAGCTTCAGAAAAGTTCATGCCTCACATTTATGAACTCAAATACTTGAAAGTGCAAAAAGTTCGAGAAATTTCAGATCAGGGGCAACAAATCATCAATAAGTTCATCCTCATCGGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

307

Amino Acids

35.18

Weight (kDa)

8.84

Isoelectric Point (pI)

52.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17400 AT1G17400 AT1G17400 AT1G72490 AT1G72490 AT1G72490
fragaria_vesca	FvH4_6g35070
malus_domestica	MD09G1179400.v1.1 MD17G1165000.v1.1
prunus_persica	Prupe.3G038300_v2.0.a1 Prupe.3G038300_v2.0.a1
pyrus_communis	pycom17g15790
rosa_chinensis	RchiOBHm_Chr2g0146241
rosa_laevigata	RLG00000020189
rosa_multiflora	Rmu_sc0002054.1_g000019
rosa_roxburghii	Rroxscaffold_152G00434940 Rroxscaffold_2G00100210
rosa_rugosa	Rorug02G0393800 Rorug02G0393900.1
rosa_samantha	Rh2AG450100 Rh2BG462300 Rh2CG436900 Rh2DG471500
rosa_wichuraiana	Rw2G036730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	647
AclWI	GGATC	1 cut(s)	407
AcsI	RAATTY	3 cut(s)	110, 238, 870
AcuI	CTGAAG	2 cut(s)	270, 792
AfaI	GTAC	1 cut(s)	79
AgsI	TTSAA	5 cut(s)	115, 169, 311, 590, 850
AhlI	ACTAGT	1 cut(s)	74
AjuI	GAANNNNNNNTTGG	2 cut(s)	52, 84
AluBI	AGCT	5 cut(s)	31, 68, 326, 363, 806
AluI	AGCT	5 cut(s)	31, 68, 326, 363, 806
AlwI	GGATC	1 cut(s)	407
Ama87I	CYCGRG	1 cut(s)	660
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	3 cut(s)	110, 238, 870
AvaI	CYCGRG	1 cut(s)	660
BauI	CACGAG	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	335
BccI	CCATC	4 cut(s)	90, 220, 364, 752
BcgI	CGANNNNNNTGC	2 cut(s)	845, 879
BciVI	GTATCC	1 cut(s)	685
BclI	TGATCA	1 cut(s)	181
BcuI	ACTAGT	1 cut(s)	74
BfaI	CTAG	4 cut(s)	75, 137, 233, 696
BfuI	GTATCC	1 cut(s)	685
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
BmeT110I	CYCGRG	1 cut(s)	660
BmsI	GCATC	2 cut(s)	452, 674
BpuEI	CTTGAG	2 cut(s)	512, 707
Bse1I	ACTGG	1 cut(s)	125
BseGI	GGATG	2 cut(s)	767, 906
BseNI	ACTGG	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	335
BsgI	GTGCAG	1 cut(s)	498
BshFI	GGCC	1 cut(s)	124
BsiHKCI	CYCGRG	1 cut(s)	660
BsnI	GGCC	1 cut(s)	124
BsoBI	CYCGRG	1 cut(s)	660
Bsp143I	GATC	4 cut(s)	181, 412, 636, 877
BspACI	CCGC	1 cut(s)	647
BspANI	GGCC	1 cut(s)	124
BspPI	GGATC	1 cut(s)	407
BspQI	GCTCTTC	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	125
BssMI	GATC	4 cut(s)	181, 412, 636, 877
BssSI	CACGAG	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	102
Bst6I	CTCTTC	1 cut(s)	333
BstF5I	GGATG	2 cut(s)	767, 906
BstKTI	GATC	4 cut(s)	184, 415, 639, 880
BstMBI	GATC	4 cut(s)	181, 412, 636, 877
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	335
BsuI	GTATCC	1 cut(s)	685
BsuRI	GGCC	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	767, 906
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	3 cut(s)	86, 128, 820
CviQI	GTAC	1 cut(s)	78
DpnI	GATC	4 cut(s)	183, 414, 638, 879
DpnII	GATC	4 cut(s)	181, 412, 636, 877
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco57I	CTGAAG	2 cut(s)	270, 792
Eco88I	CYCGRG	1 cut(s)	660
EcoRI	GAATTC	1 cut(s)	110
FaeI	CATG	3 cut(s)	89, 131, 823
FaiI	YATR	8 cut(s)	87, 129, 270, 452, 792, 794, 821, 834
FalI	AAGNNNNNCTT	2 cut(s)	15, 47
FatI	CATG	3 cut(s)	85, 127, 819
FbaI	TGATCA	1 cut(s)	181
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	2 cut(s)	774, 893
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	4 cut(s)	75, 137, 233, 696
GluI	GCNGC	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	124
Hin1II	CATG	3 cut(s)	89, 131, 823
HincII	GTYRAC	1 cut(s)	279
HindII	GTYRAC	1 cut(s)	279
HindIII	AAGCTT	3 cut(s)	29, 361, 804
HinfI	GANTC	3 cut(s)	404, 593, 782
HpaI	GTTAAC	1 cut(s)	279
Hpy166II	GTNNAC	2 cut(s)	134, 279
Hpy188I	TCNGA	8 cut(s)	146, 223, 403, 409, 787, 811, 877, 923
Hpy8I	GTNNAC	2 cut(s)	134, 279
HpyAV	CCTTC	2 cut(s)	487, 709
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	6 cut(s)	22, 323, 465, 479, 560, 856
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	3 cut(s)	89, 131, 823
Ksp22I	TGATCA	1 cut(s)	181
KspAI	GTTAAC	1 cut(s)	279
Kzo9I	GATC	4 cut(s)	181, 412, 636, 877
LguI	GCTCTTC	1 cut(s)	333
LpnPI	CCDG	8 cut(s)	29, 106, 108, 188, 261, 315, 576, 866
Lsp1109I	GCAGC	1 cut(s)	335
LweI	GCATC	2 cut(s)	452, 674
MaeI	CTAG	4 cut(s)	75, 137, 233, 696
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	2 cut(s)	264, 485
MalI	GATC	4 cut(s)	183, 414, 638, 879
MboI	GATC	4 cut(s)	181, 412, 636, 877
MluCI	AATT	6 cut(s)	110, 163, 238, 318, 349, 870
MlyI	GAGTC	1 cut(s)	602
MmeI	TCCRAC	2 cut(s)	315, 731
MnlI	CCTC	7 cut(s)	111, 135, 361, 609, 682, 834, 920
MseI	TTAA	3 cut(s)	33, 278, 627
MslI	CAYNNNNRTG	1 cut(s)	831
MwoI	GCNNNNNNNGC	1 cut(s)	28
NdeII	GATC	4 cut(s)	181, 412, 636, 877
NlaIII	CATG	3 cut(s)	89, 131, 823
PaeR7I	CTCGAG	1 cut(s)	660
PciSI	GCTCTTC	1 cut(s)	333
PfeI	GAWTC	2 cut(s)	404, 782
PflFI	GACNNNGTC	1 cut(s)	702
PkrI	GCNGC	1 cut(s)	325
PleI	GAGTC	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	601
PsyI	GACNNNGTC	1 cut(s)	702
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	831
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	3 cut(s)	33, 278, 627
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	4 cut(s)	181, 412, 636, 877
SchI	GAGTC	1 cut(s)	602
SetI	ASST	8 cut(s)	33, 70, 328, 365, 372, 393, 687, 808
SfaNI	GCATC	2 cut(s)	452, 674
Sfr274I	CTCGAG	1 cut(s)	660
SlaI	CTCGAG	1 cut(s)	660
SmiMI	CAYNNNNRTG	1 cut(s)	831
SmlI	CTYRAG	3 cut(s)	527, 660, 686
SmoI	CTYRAG	3 cut(s)	527, 660, 686
SpeI	ACTAGT	1 cut(s)	74
Sse9I	AATT	6 cut(s)	110, 163, 238, 318, 349, 870
SsiI	CCGC	1 cut(s)	647
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	4 cut(s)	75, 137, 233, 696
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	4 cut(s)	71, 187, 661, 865
TasI	AATT	6 cut(s)	110, 163, 238, 318, 349, 870
TfiI	GAWTC	2 cut(s)	404, 782
Tru1I	TTAA	3 cut(s)	33, 278, 627
Tru9I	TTAA	3 cut(s)	33, 278, 627
TseI	GCWGC	1 cut(s)	323
TspDTI	ATGAA	8 cut(s)	207, 240, 438, 689, 744, 808, 849, 895
TspGWI	ACGGA	1 cut(s)	321
Tth111I	GACNNNGTC	1 cut(s)	702
XapI	RAATTY	3 cut(s)	110, 238, 870
XhoI	CTCGAG	1 cut(s)	660
XspI	CTAG	4 cut(s)	75, 137, 233, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.