Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0007944

Physical Location & Seq

Genomic Coordinates Reverse (-)

16372383 .. 16376010

Gene Structure 3628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1165000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAAGCTTTTTGGTTGGATGCAAAATAAGATCAATGGGAAGCAACGAAACAAGAAACCAAATACAGTTTCTACTACAACCCATCATGCAAAACAAGAGCCACGTGAAGAATTTAGTGACTGGCCTCATGGATTACTAGCGATTGGAACTTTTGGAAACAATGAATTGAAAGAAAATAATGCTGCTCAAAGCCCAGATATTCAGGAAGATCCGTCTTCATCCGAAGAAATCCTAGATAATTTCACACCAGAGGAAGTTGGTAAATTGCATAAAGAGTTGACAAAACTCTTAACGCGAAAACCAGACATCGAAAAGAAAATCGCAGATCTTCCATTGGACAGATTTCTAAATTGCCCATCGAGCTTGGAGGTTGATCGGAGAACCAGCAATGTGCTTTGCTCCGATTCATCAAATGATCACAAGGATGAAGATATTGAGAAAACTATTAGTGTCATACTTGGTAGATGCAAAGACATATGTGCAGACAATAAGAAGGCAATTGGGAAGAAATCAATTTCTTTTCTTCTTAAGAAGATGTTTGTTTGTAGAAGTGGGTTTGCACCAGCACCAAGTTTGAGAGACACACTTCAAGAGTCAAGGATGGAGAAGCTTCTTAGGGTAATGCTTAACAAGAAGATCATCAATCCGCAAGGCACTCCTCGAGCATCATCGATGAAGAAATACCTTGAGGACGGACAGAATCCAACAAAAAGGGAAAATCACAATGAAGATGATACAAAAGAGAAGATTAATGATGGATGTAAATGGGTCAAGACAGATTCTGAATATATAGTACTAGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

269

Amino Acids

30.54

Weight (kDa)

8.11

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17400 AT1G17400 AT1G17400 AT1G72490 AT1G72490 AT1G72490
fragaria_vesca	FvH4_6g35070
malus_domestica	MD09G1179400.v1.1 MD17G1165000.v1.1
prunus_persica	Prupe.3G038300_v2.0.a1 Prupe.3G038300_v2.0.a1
pyrus_communis	pycom17g15790
rosa_chinensis	RchiOBHm_Chr2g0146241
rosa_laevigata	RLG00000020189
rosa_multiflora	Rmu_sc0002054.1_g000019
rosa_roxburghii	Rroxscaffold_152G00434940 Rroxscaffold_2G00100210
rosa_rugosa	Rorug02G0393800 Rorug02G0393900.1
rosa_samantha	Rh2AG450100 Rh2BG462300 Rh2CG436900 Rh2DG471500
rosa_wichuraiana	Rw2G036730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	295
AciI	CCGC	1 cut(s)	647
AclWI	GGATC	1 cut(s)	203
AcsI	RAATTY	2 cut(s)	110, 801
AcvI	CACGTG	1 cut(s)	104
AfaI	GTAC	1 cut(s)	795
AflII	CTTAAG	1 cut(s)	527
AgsI	TTSAA	2 cut(s)	169, 590
AjuI	GAANNNNNNNTTGG	2 cut(s)	52, 84
AluBI	AGCT	3 cut(s)	7, 363, 610
AluI	AGCT	3 cut(s)	7, 363, 610
Alw26I	GTCTC	1 cut(s)	573
AlwI	GGATC	1 cut(s)	203
AlwNI	CAGNNNCTG	1 cut(s)	782
Ama87I	CYCGRG	1 cut(s)	660
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	2 cut(s)	110, 801
AseI	ATTAAT	1 cut(s)	750
AvaI	CYCGRG	1 cut(s)	660
BbrPI	CACGTG	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	4 cut(s)	90, 364, 595, 749
BclI	TGATCA	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	573
BfaI	CTAG	3 cut(s)	137, 233, 797
BfrI	CTTAAG	1 cut(s)	527
BglII	AGATCT	1 cut(s)	325
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
BmcAI	AGTACT	1 cut(s)	795
BmeT110I	CYCGRG	1 cut(s)	660
BmsI	GCATC	3 cut(s)	9, 455, 674
BpiI	GAAGAC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	707
Bsa29I	ATCGAT	1 cut(s)	671
BsaAI	YACGTR	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	394
BseCI	ATCGAT	1 cut(s)	671
BseGI	GGATG	5 cut(s)	24, 218, 430, 606, 764
BseMI	GCAATG	1 cut(s)	394
BseNI	ACTGG	1 cut(s)	125
BseRI	GAGGAG	1 cut(s)	648
BseXI	GCAGC	1 cut(s)	169
BsgI	GTGCAG	1 cut(s)	501
Bsh1236I	CGCG	1 cut(s)	295
BshFI	GGCC	1 cut(s)	124
BshVI	ATCGAT	1 cut(s)	671
BsiHKCI	CYCGRG	1 cut(s)	660
BsmAI	GTCTC	1 cut(s)	573
BsnI	GGCC	1 cut(s)	124
BsoBI	CYCGRG	1 cut(s)	660
Bsp143I	GATC	6 cut(s)	30, 208, 325, 373, 415, 636
BspACI	CCGC	1 cut(s)	647
BspANI	GGCC	1 cut(s)	124
BspDI	ATCGAT	1 cut(s)	671
BspFNI	CGCG	1 cut(s)	295
BspPI	GGATC	1 cut(s)	203
BspTI	CTTAAG	1 cut(s)	527
BsrDI	GCAATG	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	125
BssMI	GATC	6 cut(s)	30, 208, 325, 373, 415, 636
Bst4CI	ACNGT	1 cut(s)	67
BstAFI	CTTAAG	1 cut(s)	527
BstBAI	YACGTR	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	614
BstF5I	GGATG	5 cut(s)	24, 218, 430, 606, 764
BstFNI	CGCG	1 cut(s)	295
BstKTI	GATC	6 cut(s)	33, 211, 328, 376, 418, 639
BstMAI	GTCTC	1 cut(s)	573
BstMBI	GATC	6 cut(s)	30, 208, 325, 373, 415, 636
BstMWI	GCNNNNNNNGC	1 cut(s)	360
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	2 cut(s)	208, 325
BstYI	RGATCY	2 cut(s)	208, 325
Bsu15I	ATCGAT	1 cut(s)	671
BsuRI	GGCC	1 cut(s)	124
BsuTUI	ATCGAT	1 cut(s)	671
BtsCI	GGATG	5 cut(s)	24, 218, 430, 606, 764
CaiI	CAGNNNCTG	1 cut(s)	782
ClaI	ATCGAT	1 cut(s)	671
Csp6I	GTAC	1 cut(s)	794
CviAII	CATG	2 cut(s)	86, 128
CviJI	RGCY	6 cut(s)	7, 100, 124, 192, 363, 610
CviKI_1	RGCY	6 cut(s)	7, 100, 124, 192, 363, 610
CviQI	GTAC	1 cut(s)	794
DdeI	CTNAG	1 cut(s)	614
DpnI	GATC	6 cut(s)	32, 210, 327, 375, 417, 638
DpnII	GATC	6 cut(s)	30, 208, 325, 373, 415, 636
Eco72I	CACGTG	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	660
FaeI	CATG	2 cut(s)	89, 131
FaiI	YATR	8 cut(s)	87, 129, 270, 455, 476, 478, 789, 791
FatI	CATG	2 cut(s)	85, 127
FauNDI	CATATG	1 cut(s)	476
FbaI	TGATCA	1 cut(s)	415
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	5 cut(s)	31, 205, 437, 613, 771
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	3 cut(s)	137, 233, 797
GluI	GCNGC	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	124
Hin1II	CATG	2 cut(s)	89, 131
HincII	GTYRAC	1 cut(s)	279
HindII	GTYRAC	1 cut(s)	279
HindIII	AAGCTT	2 cut(s)	5, 608
HinfI	GANTC	4 cut(s)	404, 593, 700, 779
Hpy166II	GTNNAC	1 cut(s)	279
Hpy188I	TCNGA	4 cut(s)	223, 378, 403, 784
Hpy188III	TCNNGA	3 cut(s)	203, 590, 772
Hpy8I	GTNNAC	1 cut(s)	279
HpyAV	CCTTC	1 cut(s)	487
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	103
HpyCH4V	TGCA	6 cut(s)	22, 89, 268, 468, 482, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	360
HpyF3I	CTNAG	1 cut(s)	614
HpySE526I	ACGT	1 cut(s)	103
Hsp92II	CATG	2 cut(s)	89, 131
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	6 cut(s)	30, 208, 325, 373, 415, 636
LmnI	GCTCC	1 cut(s)	404
LpnPI	CCDG	7 cut(s)	106, 188, 207, 261, 315, 397, 576
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	3 cut(s)	9, 455, 674
MaeI	CTAG	3 cut(s)	137, 233, 797
MaeII	ACGT	1 cut(s)	103
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	6 cut(s)	32, 210, 327, 375, 417, 638
MboI	GATC	6 cut(s)	30, 208, 325, 373, 415, 636
MfeI	CAATTG	1 cut(s)	498
MflI	RGATCY	2 cut(s)	208, 325
MluCI	AATT	8 cut(s)	110, 164, 238, 263, 349, 498, 513, 801
MlyI	GAGTC	1 cut(s)	602
MmeI	TCCRAC	1 cut(s)	728
MnlI	CCTC	5 cut(s)	135, 244, 361, 669, 682
MseI	TTAA	4 cut(s)	290, 528, 627, 750
MslI	CAYNNNNRTG	1 cut(s)	423
MspCI	CTTAAG	1 cut(s)	527
MunI	CAATTG	1 cut(s)	498
MvnI	CGCG	1 cut(s)	295
MwoI	GCNNNNNNNGC	1 cut(s)	360
NdeI	CATATG	1 cut(s)	476
NdeII	GATC	6 cut(s)	30, 208, 325, 373, 415, 636
NlaIII	CATG	2 cut(s)	89, 131
NmuCI	GTSAC	1 cut(s)	116
PaeR7I	CTCGAG	1 cut(s)	660
PfeI	GAWTC	3 cut(s)	404, 700, 779
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	1 cut(s)	601
PmaCI	CACGTG	1 cut(s)	104
PmlI	CACGTG	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	601
Ppu21I	YACGTR	1 cut(s)	104
PshBI	ATTAAT	1 cut(s)	750
PspCI	CACGTG	1 cut(s)	104
PspXI	VCTCGAGB	1 cut(s)	660
PstNI	CAGNNNCTG	1 cut(s)	782
PsuI	RGATCY	2 cut(s)	208, 325
RsaI	GTAC	1 cut(s)	795
RsaNI	GTAC	1 cut(s)	794
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	4 cut(s)	290, 528, 627, 750
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	6 cut(s)	30, 208, 325, 373, 415, 636
ScaI	AGTACT	1 cut(s)	795
SchI	GAGTC	1 cut(s)	602
SetI	ASST	6 cut(s)	9, 106, 365, 372, 612, 687
SfaNI	GCATC	3 cut(s)	9, 455, 674
Sfr274I	CTCGAG	1 cut(s)	660
SlaI	CTCGAG	1 cut(s)	660
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	3 cut(s)	527, 660, 686
SmoI	CTYRAG	3 cut(s)	527, 660, 686
Sse9I	AATT	8 cut(s)	110, 164, 238, 263, 349, 498, 513, 801
SsiI	CCGC	1 cut(s)	647
SspMI	CTAG	3 cut(s)	137, 233, 797
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	1 cut(s)	106
TaqI	TCGA	4 cut(s)	309, 359, 661, 671
TasI	AATT	8 cut(s)	110, 164, 238, 263, 349, 498, 513, 801
TatI	WGTACW	1 cut(s)	793
TfiI	GAWTC	3 cut(s)	404, 700, 779
Tru1I	TTAA	4 cut(s)	290, 528, 627, 750
Tru9I	TTAA	4 cut(s)	290, 528, 627, 750
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	7 cut(s)	17, 177, 207, 396, 441, 689, 741
TspGWI	ACGGA	2 cut(s)	201, 708
Vha464I	CTTAAG	1 cut(s)	527
VspI	ATTAAT	1 cut(s)	750
XapI	RAATTY	2 cut(s)	110, 801
XhoI	CTCGAG	1 cut(s)	660
XspI	CTAG	3 cut(s)	137, 233, 797
ZrmI	AGTACT	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.