pycom17g15790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0007944
Physical Location & Seq
Reverse (-)
13893668 .. 13894598
931 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g15790.1

Sequence Viewer

Length: 750 bp
ATGCATTGTGTAGATCATGCAAAACAAGAGCCACGTGAAGAATTTAGTGACTGGCCTCATGGATTACTAGCGATTGGAACTTTTGGAAACAATGAATTGAAAGAAAATAATGCTGCTCAAAGCCCAGATATTCAGGAACATCCGTCTTCATCCGAAGAAATCCTAGATAATTTCACGCCAGAGGAAGTTGGTAAATTGCATAAAGAGTTGACAAAACTCTTAACGCGAAAACCAGACATCGAAAAGAAAATCGCAGATCTTCCGTTGGACAGATTTCTAAATTGCCCATCAAGCTTGGAGGTTGATCGCAGAACCAGCAATGTGCTTTGCTCCGATTCATCAGATGATCACAAGGATGAAGATATTGAGAAAACTATTAGTGTCATACTTGGTAGATGCAAAGACATATGTGCAGACAATAAGAAGGCAATTGGGAAGAAATCAATTTCTTTTCTTCTTAAGAAGATGTTTGTTTGTAGAAGTGGGTTTGCACCAGCACCAAGTTTGAGAGACACACTTCAAGAGTCAAGGATGGAGAAGCTTCTTAGGGTAATGCTTAACAAGAAGATCATCAATCCGCAAGGCACTCCTCGAGCATCATCAATGAAGAAATACCTCGAGGACAGACAGAATCCAACAGTAAGGGAAAATCACAATGAAGATGATACAAAAGAGAAGATTAATGGTGGATGTAAATGGGTCAAGACAGATTCTGAATGTCAGTTCGTTTTTCAATGGCTTGATTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

28.44

Weight (kDa)

6.03

Isoelectric Point (pI)

51.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 748
AbsI CCTCGAGG 1 cut(s) 617
AccII CGCG 1 cut(s) 226
AciI CCGC 1 cut(s) 578
AcsI RAATTY 1 cut(s) 41
AcvI CACGTG 1 cut(s) 35
AflII CTTAAG 1 cut(s) 458
AgsI TTSAA 3 cut(s) 100, 521, 734
AluBI AGCT 2 cut(s) 294, 541
AluI AGCT 2 cut(s) 294, 541
Alw26I GTCTC 1 cut(s) 504
AlwNI CAGNNNCTG 1 cut(s) 713
Ama87I CYCGRG 2 cut(s) 591, 617
AoxI GGCC 1 cut(s) 53
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 41
AseI ATTAAT 1 cut(s) 681
AvaI CYCGRG 2 cut(s) 591, 617
BbrPI CACGTG 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 100
BccI CCATC 2 cut(s) 295, 526
BclI TGATCA 1 cut(s) 346
BcoDI GTCTC 1 cut(s) 504
BfaI CTAG 2 cut(s) 68, 164
BfrI CTTAAG 1 cut(s) 458
BglII AGATCT 1 cut(s) 256
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
BmeT110I CYCGRG 2 cut(s) 591, 617
BmsI GCATC 2 cut(s) 386, 605
BpiI GAAGAC 1 cut(s) 138
BsaAI YACGTR 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 56
Bse3DI GCAATG 1 cut(s) 325
BseGI GGATG 5 cut(s) 139, 149, 361, 537, 695
BseMI GCAATG 1 cut(s) 325
BseNI ACTGG 1 cut(s) 56
BseRI GAGGAG 1 cut(s) 579
BseXI GCAGC 1 cut(s) 100
BsgI GTGCAG 1 cut(s) 432
Bsh1236I CGCG 1 cut(s) 226
BshFI GGCC 1 cut(s) 55
BsiHKCI CYCGRG 2 cut(s) 591, 617
BsmAI GTCTC 1 cut(s) 504
BsnI GGCC 1 cut(s) 55
BsoBI CYCGRG 2 cut(s) 591, 617
Bsp143I GATC 5 cut(s) 13, 256, 304, 346, 567
BspACI CCGC 1 cut(s) 578
BspANI GGCC 1 cut(s) 55
BspFNI CGCG 1 cut(s) 226
BspTI CTTAAG 1 cut(s) 458
BsrDI GCAATG 1 cut(s) 325
BsrI ACTGG 1 cut(s) 56
BssMI GATC 5 cut(s) 13, 256, 304, 346, 567
Bst4CI ACNGT 1 cut(s) 640
BstAFI CTTAAG 1 cut(s) 458
BstBAI YACGTR 1 cut(s) 35
BstDEI CTNAG 1 cut(s) 545
BstF5I GGATG 5 cut(s) 139, 149, 361, 537, 695
BstFNI CGCG 1 cut(s) 226
BstKTI GATC 5 cut(s) 16, 259, 307, 349, 570
BstMAI GTCTC 1 cut(s) 504
BstMBI GATC 5 cut(s) 13, 256, 304, 346, 567
BstMWI GCNNNNNNNGC 2 cut(s) 291, 315
BstUI CGCG 1 cut(s) 226
BstV1I GCAGC 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 1 cut(s) 55
BtsCI GGATG 5 cut(s) 139, 149, 361, 537, 695
CaiI CAGNNNCTG 1 cut(s) 713
CviAII CATG 2 cut(s) 17, 59
CviJI RGCY 6 cut(s) 31, 55, 123, 294, 541, 739
CviKI_1 RGCY 6 cut(s) 31, 55, 123, 294, 541, 739
DdeI CTNAG 1 cut(s) 545
DpnI GATC 5 cut(s) 15, 258, 306, 348, 569
DpnII GATC 5 cut(s) 13, 256, 304, 346, 567
Eco72I CACGTG 1 cut(s) 35
Eco88I CYCGRG 2 cut(s) 591, 617
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 20, 62
FaiI YATR 7 cut(s) 18, 60, 201, 386, 407, 409, 748
FatI CATG 2 cut(s) 16, 58
FauNDI CATATG 1 cut(s) 407
FbaI TGATCA 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 5 cut(s) 126, 136, 368, 544, 702
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 2 cut(s) 68, 164
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 1 cut(s) 55
Hin1II CATG 2 cut(s) 20, 62
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HindIII AAGCTT 2 cut(s) 292, 539
HinfI GANTC 4 cut(s) 335, 524, 631, 710
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 4 cut(s) 154, 334, 343, 715
Hpy188III TCNNGA 3 cut(s) 134, 521, 703
Hpy8I GTNNAC 1 cut(s) 210
HpyAV CCTTC 1 cut(s) 418
HpyCH4III ACNGT 1 cut(s) 640
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 6 cut(s) 4, 20, 199, 399, 413, 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 291, 315
HpyF3I CTNAG 1 cut(s) 545
HpySE526I ACGT 1 cut(s) 34
Hsp92II CATG 2 cut(s) 20, 62
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 5 cut(s) 13, 256, 304, 346, 567
LmnI GCTCC 1 cut(s) 335
LpnPI CCDG 7 cut(s) 37, 119, 138, 192, 246, 328, 507
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 2 cut(s) 386, 605
MaeI CTAG 2 cut(s) 68, 164
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 47
MalI GATC 5 cut(s) 15, 258, 306, 348, 569
MboI GATC 5 cut(s) 13, 256, 304, 346, 567
MfeI CAATTG 1 cut(s) 429
MflI RGATCY 1 cut(s) 256
MluCI AATT 7 cut(s) 41, 95, 169, 194, 280, 429, 444
MlyI GAGTC 1 cut(s) 533
MmeI TCCRAC 2 cut(s) 246, 659
MnlI CCTC 6 cut(s) 66, 175, 292, 600, 613, 626
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 4 cut(s) 221, 459, 558, 681
MslI CAYNNNNRTG 1 cut(s) 354
MspCI CTTAAG 1 cut(s) 458
MunI CAATTG 1 cut(s) 429
MvnI CGCG 1 cut(s) 226
MwoI GCNNNNNNNGC 2 cut(s) 291, 315
NdeI CATATG 1 cut(s) 407
NdeII GATC 5 cut(s) 13, 256, 304, 346, 567
NlaIII CATG 2 cut(s) 20, 62
NmuCI GTSAC 1 cut(s) 47
NsiI ATGCAT 1 cut(s) 6
PaeR7I CTCGAG 2 cut(s) 591, 617
PfeI GAWTC 3 cut(s) 335, 631, 710
PkrI GCNGC 1 cut(s) 115
PleI GAGTC 1 cut(s) 532
PmaCI CACGTG 1 cut(s) 35
PmlI CACGTG 1 cut(s) 35
PpsI GAGTC 1 cut(s) 532
Ppu21I YACGTR 1 cut(s) 35
PshBI ATTAAT 1 cut(s) 681
PsiI TTATAA 1 cut(s) 748
PspCI CACGTG 1 cut(s) 35
PspXI VCTCGAGB 2 cut(s) 591, 617
PstNI CAGNNNCTG 1 cut(s) 713
PsuI RGATCY 1 cut(s) 256
RseI CAYNNNNRTG 1 cut(s) 354
SaqAI TTAA 4 cut(s) 221, 459, 558, 681
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 5 cut(s) 13, 256, 304, 346, 567
SchI GAGTC 1 cut(s) 533
SetI ASST 5 cut(s) 37, 296, 303, 543, 618
SfaNI GCATC 2 cut(s) 386, 605
Sfr274I CTCGAG 2 cut(s) 591, 617
SlaI CTCGAG 2 cut(s) 591, 617
SmiMI CAYNNNNRTG 1 cut(s) 354
SmlI CTYRAG 3 cut(s) 458, 591, 617
SmoI CTYRAG 3 cut(s) 458, 591, 617
Sse9I AATT 7 cut(s) 41, 95, 169, 194, 280, 429, 444
SsiI CCGC 1 cut(s) 578
SspMI CTAG 2 cut(s) 68, 164
TaaI ACNGT 1 cut(s) 640
TaiI ACGT 1 cut(s) 37
TaqI TCGA 3 cut(s) 240, 592, 618
TasI AATT 7 cut(s) 41, 95, 169, 194, 280, 429, 444
TfiI GAWTC 3 cut(s) 335, 631, 710
Tru1I TTAA 4 cut(s) 221, 459, 558, 681
Tru9I TTAA 4 cut(s) 221, 459, 558, 681
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 6 cut(s) 108, 138, 327, 372, 620, 672
TspGWI ACGGA 2 cut(s) 132, 252
Vha464I CTTAAG 1 cut(s) 458
VspI ATTAAT 1 cut(s) 681
XapI RAATTY 1 cut(s) 41
XhoI CTCGAG 2 cut(s) 591, 617
XspI CTAG 2 cut(s) 68, 164
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.