FvH4_6g35070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007944
Physical Location & Seq
Forward (+)
27723250 .. 27725197
1948 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35070.t1

Sequence Viewer

Length: 903 bp
ATGAGGCTTTTCGGTTGGGTGCAAGATAAGCTTCATGGGAAGCAGGGGAACAAGAAACCAAATACAGCTTCGACTAGTACCCATCATGTAAAACCAGAGCCTCGTGAAGAATTCAGTGACTGGCCTCATAGCTTACTAGCAATCGGAACTTTTGGGAACAACAATTTGAAAGAGAGTACTGATTATCAAAGCCAACATATTCAGGAAGAACCATCTTCATCAGACGAAATACTAGAAAATTTCACTCCTGAAGAAGTTGGTAAATTACATAAAGAGCTAACGAAGCTCTTGACACGAAAACCAGACATTGAAAAGGAAATTGCAGCTCTTCCGTTGGACAGATTTCTAAATTGTCCATCAAGCCTGGAGGTTGATAGGAGAACAAGCAACGCGCTTTGCTCCGATTCAGATGATCACAAGGATGAAGATATTGAGAAAACCATTAGTGTTATACTTGGGAGATGCAAAGACATCTGTGCAGATAATAACAAGAAGGCGATTGGGAAGAAATCAATTTCTTTTCTTCTCAAGAAGATGTTTGTTTGTAGAAGTGGGTTTGCACCAGCACCAAGTTTGAGAGATACATTTCAAGAGTCAAGAATGGAGAAGTTCTTGAGGCTAATGCTTAACAAGAAGATCATCAATCCGCAAAATTCTTCTCGAGCATCATCAATGAAGAAGTACCTGGAGGATACTAGACAAAATCCAACCAAGAAGGGAAATAACAATGAAGAAGATAAAAAAGAGAAAATCAATGATGGATGTAAATGGGTGAAGACTGATTCTGAATGTGAGTGCAACCTGAACTTAAAAATTTTCATGATAAACTATAGTTCTAAATTGCTCAGAATATTGATGAGAGCTACATATTTTCTTGTTGCAGATATAGTCCTAGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

34.4

Weight (kDa)

8.49

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 392
AciI CCGC 1 cut(s) 647
AcsI RAATTY 5 cut(s) 110, 238, 652, 813, 897
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 3 cut(s) 79, 178, 683
AgsI TTSAA 3 cut(s) 169, 311, 590
AhlI ACTAGT 1 cut(s) 74
AjnI CCWGG 2 cut(s) 363, 684
AjuI GAANNNNNNNTTGG 2 cut(s) 52, 84
AluBI AGCT 7 cut(s) 31, 68, 132, 277, 286, 326, 863
AluI AGCT 7 cut(s) 31, 68, 132, 277, 286, 326, 863
AlwNI CAGNNNCTG 1 cut(s) 120
Ama87I CYCGRG 1 cut(s) 660
AoxI GGCC 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 5 cut(s) 110, 238, 652, 813, 897
AspLEI GCGC 1 cut(s) 394
AsuHPI GGTGA 1 cut(s) 784
AvaI CYCGRG 1 cut(s) 660
BauI CACGAG 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 782
BbvI GCAGC 1 cut(s) 335
BccI CCATC 4 cut(s) 90, 220, 364, 752
BciT130I CCWGG 2 cut(s) 365, 686
BciVI GTATCC 1 cut(s) 685
BclI TGATCA 1 cut(s) 412
BcuI ACTAGT 1 cut(s) 74
BfaI CTAG 5 cut(s) 75, 137, 233, 696, 893
BfmI CTRYAG 1 cut(s) 829
BfuI GTATCC 1 cut(s) 685
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
BmcAI AGTACT 1 cut(s) 178
Bme1390I CCNGG 2 cut(s) 365, 686
BmeT110I CYCGRG 1 cut(s) 660
BmrFI CCNGG 2 cut(s) 365, 686
BmsI GCATC 2 cut(s) 452, 674
BpiI GAAGAC 1 cut(s) 782
BpmI CTGGAG 2 cut(s) 386, 707
BpuEI CTTGAG 2 cut(s) 512, 634
Bse1I ACTGG 1 cut(s) 125
BseBI CCWGG 2 cut(s) 365, 686
BseGI GGATG 2 cut(s) 427, 767
BseMII CTCAG 1 cut(s) 859
BseNI ACTGG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 335
BsgI GTGCAG 1 cut(s) 498
Bsh1236I CGCG 1 cut(s) 392
BshFI GGCC 1 cut(s) 124
BsiHKCI CYCGRG 1 cut(s) 660
BsnI GGCC 1 cut(s) 124
BsoBI CYCGRG 1 cut(s) 660
Bsp143I GATC 2 cut(s) 412, 636
BspACI CCGC 1 cut(s) 647
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 1 cut(s) 858
BspFNI CGCG 1 cut(s) 392
BspHI TCATGA 1 cut(s) 819
BspQI GCTCTTC 1 cut(s) 333
BsrI ACTGG 1 cut(s) 125
BssMI GATC 2 cut(s) 412, 636
BssSI CACGAG 1 cut(s) 102
Bst2BI CACGAG 1 cut(s) 102
Bst2UI CCWGG 2 cut(s) 365, 686
Bst6I CTCTTC 1 cut(s) 333
BstDEI CTNAG 1 cut(s) 845
BstF5I GGATG 2 cut(s) 427, 767
BstFNI CGCG 1 cut(s) 392
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 2 cut(s) 415, 639
BstMBI GATC 2 cut(s) 412, 636
BstMWI GCNNNNNNNGC 2 cut(s) 28, 283
BstNI CCWGG 2 cut(s) 365, 686
BstSCI CCNGG 2 cut(s) 363, 684
BstSFI CTRYAG 1 cut(s) 829
BstUI CGCG 1 cut(s) 392
BstV1I GCAGC 1 cut(s) 335
BstV2I GAAGAC 1 cut(s) 782
BsuI GTATCC 1 cut(s) 685
BsuRI GGCC 1 cut(s) 124
BtsCI GGATG 2 cut(s) 427, 767
BtsIMutI CAGTG 1 cut(s) 121
CaiI CAGNNNCTG 1 cut(s) 120
CciI TCATGA 1 cut(s) 819
CfoI GCGC 1 cut(s) 394
Csp6I GTAC 3 cut(s) 78, 177, 682
CviAII CATG 3 cut(s) 35, 86, 820
CviQI GTAC 3 cut(s) 78, 177, 682
DdeI CTNAG 1 cut(s) 845
DpnI GATC 2 cut(s) 414, 638
DpnII GATC 2 cut(s) 412, 636
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco57I CTGAAG 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 660
EcoRI GAATTC 1 cut(s) 110
EcoRII CCWGG 2 cut(s) 363, 684
FaeI CATG 3 cut(s) 38, 89, 823
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FatI CATG 3 cut(s) 34, 85, 819
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 2 cut(s) 434, 774
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 5 cut(s) 75, 137, 233, 696, 893
GlaI GCGC 1 cut(s) 393
GluI GCNGC 1 cut(s) 324
GsuI CTGGAG 2 cut(s) 386, 707
HaeIII GGCC 1 cut(s) 124
HhaI GCGC 1 cut(s) 394
Hin1II CATG 3 cut(s) 38, 89, 823
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 3 cut(s) 404, 593, 782
HphI GGTGA 1 cut(s) 784
Hpy188I TCNGA 6 cut(s) 146, 223, 403, 409, 787, 848
HpyAV CCTTC 2 cut(s) 487, 709
HpyCH4V TGCA 7 cut(s) 22, 323, 465, 479, 560, 798, 881
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 283
HpyF3I CTNAG 1 cut(s) 845
Hsp92II CATG 3 cut(s) 38, 89, 823
HspAI GCGC 1 cut(s) 392
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 2 cut(s) 412, 636
LguI GCTCTTC 1 cut(s) 333
LmnI GCTCC 1 cut(s) 404
Lsp1109I GCAGC 1 cut(s) 335
LweI GCATC 2 cut(s) 452, 674
MaeI CTAG 5 cut(s) 75, 137, 233, 696, 893
MaeIII GTNAC 1 cut(s) 116
MalI GATC 2 cut(s) 414, 638
MboI GATC 2 cut(s) 412, 636
MlyI GAGTC 1 cut(s) 602
MmeI TCCRAC 2 cut(s) 315, 731
MnlI CCTC 5 cut(s) 111, 135, 361, 609, 682
MseI TTAA 2 cut(s) 627, 809
MslI CAYNNNNRTG 1 cut(s) 420
MspR9I CCNGG 2 cut(s) 365, 686
MvaI CCWGG 2 cut(s) 365, 686
MvnI CGCG 1 cut(s) 392
MwoI GCNNNNNNNGC 2 cut(s) 28, 283
NdeII GATC 2 cut(s) 412, 636
NlaIII CATG 3 cut(s) 38, 89, 823
NmuCI GTSAC 1 cut(s) 116
PaeR7I CTCGAG 1 cut(s) 660
PagI TCATGA 1 cut(s) 819
PciSI GCTCTTC 1 cut(s) 333
PfeI GAWTC 2 cut(s) 404, 782
PkrI GCNGC 1 cut(s) 325
PleI GAGTC 1 cut(s) 601
PpsI GAGTC 1 cut(s) 601
Psp6I CCWGG 2 cut(s) 363, 684
PspGI CCWGG 2 cut(s) 363, 684
PstNI CAGNNNCTG 1 cut(s) 120
RsaI GTAC 3 cut(s) 79, 178, 683
RsaNI GTAC 3 cut(s) 78, 177, 682
RseI CAYNNNNRTG 1 cut(s) 420
SapI GCTCTTC 1 cut(s) 333
SaqAI TTAA 2 cut(s) 627, 809
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 2 cut(s) 412, 636
ScaI AGTACT 1 cut(s) 178
SchI GAGTC 1 cut(s) 602
ScrFI CCNGG 2 cut(s) 365, 686
SfaNI GCATC 2 cut(s) 452, 674
SfcI CTRYAG 1 cut(s) 829
Sfr274I CTCGAG 1 cut(s) 660
SlaI CTCGAG 1 cut(s) 660
SmiMI CAYNNNNRTG 1 cut(s) 420
SmlI CTYRAG 3 cut(s) 527, 613, 660
SmoI CTYRAG 3 cut(s) 527, 613, 660
SpeI ACTAGT 1 cut(s) 74
SsiI CCGC 1 cut(s) 647
SspI AATATT 1 cut(s) 852
SspMI CTAG 5 cut(s) 75, 137, 233, 696, 893
StyD4I CCNGG 2 cut(s) 363, 684
TaqI TCGA 2 cut(s) 71, 661
TatI WGTACW 1 cut(s) 176
TfiI GAWTC 2 cut(s) 404, 782
Tru1I TTAA 2 cut(s) 627, 809
Tru9I TTAA 2 cut(s) 627, 809
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 6 cut(s) 23, 207, 438, 689, 744, 808
TspGWI ACGGA 1 cut(s) 321
TspRI CASTG 1 cut(s) 121
XapI RAATTY 5 cut(s) 110, 238, 652, 813, 897
XhoI CTCGAG 1 cut(s) 660
XspI CTAG 5 cut(s) 75, 137, 233, 696, 893
ZrmI AGTACT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.