Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002054.1

Orthogroup ID

OG0007944

Physical Location & Seq

Genomic Coordinates Reverse (-)

116539 .. 119851

Gene Structure 3313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002054.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atgatctggtctgcggtgttgtttaacatgatcttagagctttggctccatgaggtcttgccgggctcccaaccccgtatggcggagtgcaaaatggagtcaactgaccccaatctgctctttaacacctcactttttgcaaacaaacttcctcctccagcaataccacctttctttactgaaagagtgactgaccctccagttgtatctcagaaaatgaggcttttcggttgggtgcaagataagcttaatgggaagcaggggaacaagaaaccaaatacagcttcgactagtacccatcatgtaaaaccagagcctcgtgaagaattcaatgactggcctcatggtttactagcaatcggaacttttggaaacaacaatttgaaagagaatactgatcatcgaagccaaaatattcaggaagaaccatcttcatcagatgaaatactagaaaatttcactcctgaagaagttggtaagttacataaagagttaacgaaactcttgacacgaaaaccagacattgaaaaggaaattgcagctcttccgttggacagatttctaaattgtccatcaagcttggaggttgataggagaacaagcaacgtgctttgctctgattcagatgatcccaaagatgaagatattgagaaaaccattagtgttatacttggtagatgcaaagacatttgtgcagatagtaacaagaaggcgattgggaagaaatcactttcttttcttctcaagaagatgtttgtttgtagaagtggatttgcaccagcacccagtttgagagatacatttcaagagtcaagaatggagaagtttttgaggctaatgcttaacaagaagatcatcaatccgcaaagttcttctcgagcatcatcaatgaagaaataccttgaggatactagacaaagtccaaccaagaagggaaataataatgaagaaaatacaaaagagaaaatcaatgatggatgtaaatgggtcaagactgattctgaatatatagtcctagaaatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

38.8

Weight (kDa)

7.57

Isoelectric Point (pI)

55.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17400 AT1G17400 AT1G17400 AT1G72490 AT1G72490 AT1G72490
fragaria_vesca	FvH4_6g35070
malus_domestica	MD09G1179400.v1.1 MD17G1165000.v1.1
prunus_persica	Prupe.3G038300_v2.0.a1 Prupe.3G038300_v2.0.a1
pyrus_communis	pycom17g15790
rosa_chinensis	RchiOBHm_Chr2g0146241
rosa_laevigata	RLG00000020189
rosa_multiflora	Rmu_sc0002054.1_g000019
rosa_roxburghii	Rroxscaffold_152G00434940 Rroxscaffold_2G00100210
rosa_rugosa	Rorug02G0393800 Rorug02G0393900.1
rosa_samantha	Rh2AG450100 Rh2BG462300 Rh2CG436900 Rh2DG471500
rosa_wichuraiana	Rw2G036730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	14, 83, 863
AclWI	GGATC	1 cut(s)	623
AcsI	RAATTY	2 cut(s)	326, 454
AcuI	CTGAAG	1 cut(s)	486
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	4 cut(s)	331, 385, 527, 806
AhlI	ACTAGT	1 cut(s)	290
AjuI	GAANNNNNNNTTGG	2 cut(s)	268, 300
AluBI	AGCT	5 cut(s)	40, 247, 284, 542, 579
AluI	AGCT	5 cut(s)	40, 247, 284, 542, 579
AlwI	GGATC	1 cut(s)	623
Ama87I	CYCGRG	1 cut(s)	876
AoxI	GGCC	1 cut(s)	338
ApeKI	GCWGC	1 cut(s)	539
ApoI	RAATTY	2 cut(s)	326, 454
AsuC2I	CCSGG	1 cut(s)	63
AvaI	CYCGRG	1 cut(s)	876
BanII	GRGCYC	1 cut(s)	68
BauI	CACGAG	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	551
BccI	CCATC	4 cut(s)	306, 436, 580, 968
BciVI	GTATCC	1 cut(s)	901
BclI	TGATCA	1 cut(s)	397
BcnI	CCSGG	1 cut(s)	63
BcuI	ACTAGT	1 cut(s)	290
BfaI	CTAG	5 cut(s)	291, 353, 449, 912, 1016
BfuI	GTATCC	1 cut(s)	901
BisI	GCNGC	1 cut(s)	540
BlsI	GCNGC	1 cut(s)	541
Bme1390I	CCNGG	1 cut(s)	63
BmeT110I	CYCGRG	1 cut(s)	876
BmiI	GGNNCC	2 cut(s)	47, 67
BmrFI	CCNGG	1 cut(s)	63
BmrI	ACTGGG	1 cut(s)	780
BmsI	GCATC	2 cut(s)	668, 890
BmuI	ACTGGG	1 cut(s)	780
BpmI	CTGGAG	2 cut(s)	141, 183
BpuEI	CTTGAG	2 cut(s)	728, 923
BpuMI	CCSGG	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	3 cut(s)	200, 341, 786
BseGI	GGATG	1 cut(s)	983
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	3 cut(s)	200, 341, 786
BseRI	GAGGAG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	551
BsgI	GTGCAG	1 cut(s)	714
BshFI	GGCC	1 cut(s)	340
BsiHKCI	CYCGRG	1 cut(s)	876
BsiSI	CCGG	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	82
BsnI	GGCC	1 cut(s)	340
BsoBI	CYCGRG	1 cut(s)	876
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	5 cut(s)	3, 30, 397, 628, 852
BspACI	CCGC	3 cut(s)	14, 83, 863
BspANI	GGCC	1 cut(s)	340
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	47, 67
BspPI	GGATC	1 cut(s)	623
BspQI	GCTCTTC	1 cut(s)	549
BsrI	ACTGG	3 cut(s)	200, 341, 786
BssMI	GATC	5 cut(s)	3, 30, 397, 628, 852
BssSI	CACGAG	1 cut(s)	318
Bst2BI	CACGAG	1 cut(s)	318
Bst6I	CTCTTC	1 cut(s)	549
BstDEI	CTNAG	2 cut(s)	34, 210
BstF5I	GGATG	1 cut(s)	983
BstKTI	GATC	5 cut(s)	6, 33, 400, 631, 855
BstMBI	GATC	5 cut(s)	3, 30, 397, 628, 852
BstMWI	GCNNNNNNNGC	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	551
BsuI	GTATCC	1 cut(s)	901
BsuRI	GGCC	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	983
Csp6I	GTAC	1 cut(s)	294
CviAII	CATG	4 cut(s)	28, 50, 302, 344
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	2 cut(s)	34, 210
DpnI	GATC	5 cut(s)	5, 32, 399, 630, 854
DpnII	GATC	5 cut(s)	3, 30, 397, 628, 852
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
EciI	GGCGGA	1 cut(s)	98
Eco24I	GRGCYC	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	486
Eco88I	CYCGRG	1 cut(s)	876
EcoRI	GAATTC	1 cut(s)	326
EcoT38I	GRGCYC	1 cut(s)	68
FaeI	CATG	4 cut(s)	31, 53, 305, 347
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FatI	CATG	4 cut(s)	27, 49, 301, 343
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	1 cut(s)	540
FokI	GGATG	1 cut(s)	990
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	540
FspBI	CTAG	5 cut(s)	291, 353, 449, 912, 1016
GluI	GCNGC	1 cut(s)	540
GsuI	CTGGAG	2 cut(s)	141, 183
HaeIII	GGCC	1 cut(s)	340
HapII	CCGG	1 cut(s)	62
Hin1II	CATG	4 cut(s)	31, 53, 305, 347
HincII	GTYRAC	2 cut(s)	102, 495
HindII	GTYRAC	2 cut(s)	102, 495
HindIII	AAGCTT	2 cut(s)	245, 577
HinfI	GANTC	4 cut(s)	98, 620, 809, 998
HpaI	GTTAAC	1 cut(s)	495
HpaII	CCGG	1 cut(s)	62
Hpy166II	GTNNAC	3 cut(s)	102, 350, 495
Hpy188I	TCNGA	6 cut(s)	213, 362, 439, 619, 625, 1003
Hpy188III	TCNNGA	9 cut(s)	320, 419, 464, 505, 745, 806, 813, 876, 991
Hpy8I	GTNNAC	3 cut(s)	102, 350, 495
HpyAV	CCTTC	2 cut(s)	703, 925
HpyCH4IV	ACGT	1 cut(s)	606
HpyCH4V	TGCA	7 cut(s)	90, 140, 238, 539, 681, 695, 776
HpyF10VI	GCNNNNNNNGC	1 cut(s)	244
HpyF3I	CTNAG	2 cut(s)	34, 210
HpySE526I	ACGT	1 cut(s)	606
Hsp92II	CATG	4 cut(s)	31, 53, 305, 347
Ksp22I	TGATCA	1 cut(s)	397
KspAI	GTTAAC	1 cut(s)	495
Kzo9I	GATC	5 cut(s)	3, 30, 397, 628, 852
LguI	GCTCTTC	1 cut(s)	549
LmnI	GCTCC	2 cut(s)	51, 71
Lsp1109I	GCAGC	1 cut(s)	551
LweI	GCATC	2 cut(s)	668, 890
MaeI	CTAG	5 cut(s)	291, 353, 449, 912, 1016
MaeII	ACGT	1 cut(s)	606
MaeIII	GTNAC	3 cut(s)	187, 480, 701
MalI	GATC	5 cut(s)	5, 32, 399, 630, 854
MboI	GATC	5 cut(s)	3, 30, 397, 628, 852
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	5 cut(s)	326, 379, 454, 534, 565
MlyI	GAGTC	2 cut(s)	107, 818
MmeI	TCCRAC	2 cut(s)	531, 947
MseI	TTAA	5 cut(s)	24, 123, 249, 494, 843
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	244
NciI	CCSGG	1 cut(s)	63
NdeII	GATC	5 cut(s)	3, 30, 397, 628, 852
NlaIII	CATG	4 cut(s)	31, 53, 305, 347
NlaIV	GGNNCC	2 cut(s)	47, 67
NmuCI	GTSAC	1 cut(s)	187
PaeR7I	CTCGAG	1 cut(s)	876
PciSI	GCTCTTC	1 cut(s)	549
PfeI	GAWTC	2 cut(s)	620, 998
PflFI	GACNNNGTC	1 cut(s)	918
PkrI	GCNGC	1 cut(s)	541
PleI	GAGTC	2 cut(s)	106, 817
PpsI	GAGTC	2 cut(s)	106, 817
PspN4I	GGNNCC	2 cut(s)	47, 67
PsyI	GACNNNGTC	1 cut(s)	918
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	549
SaqAI	TTAA	5 cut(s)	24, 123, 249, 494, 843
SatI	GCNGC	1 cut(s)	540
Sau3AI	GATC	5 cut(s)	3, 30, 397, 628, 852
SchI	GAGTC	2 cut(s)	107, 818
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	1 cut(s)	68
SfaNI	GCATC	2 cut(s)	668, 890
Sfr274I	CTCGAG	1 cut(s)	876
SlaI	CTCGAG	1 cut(s)	876
SmlI	CTYRAG	3 cut(s)	743, 876, 902
SmoI	CTYRAG	3 cut(s)	743, 876, 902
SpeI	ACTAGT	1 cut(s)	290
Sse9I	AATT	5 cut(s)	326, 379, 454, 534, 565
SsiI	CCGC	3 cut(s)	14, 83, 863
SspI	AATATT	1 cut(s)	415
SspMI	CTAG	5 cut(s)	291, 353, 449, 912, 1016
StyD4I	CCNGG	1 cut(s)	61
TaiI	ACGT	1 cut(s)	609
TaqI	TCGA	3 cut(s)	287, 403, 877
TasI	AATT	5 cut(s)	326, 379, 454, 534, 565
TfiI	GAWTC	2 cut(s)	620, 998
Tru1I	TTAA	5 cut(s)	24, 123, 249, 494, 843
Tru9I	TTAA	5 cut(s)	24, 123, 249, 494, 843
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	1 cut(s)	539
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	5 cut(s)	423, 456, 654, 905, 960
TspGWI	ACGGA	1 cut(s)	537
Tth111I	GACNNNGTC	1 cut(s)	918
XapI	RAATTY	2 cut(s)	326, 454
XhoI	CTCGAG	1 cut(s)	876
XspI	CTAG	5 cut(s)	291, 353, 449, 912, 1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.