Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007944

Physical Location & Seq

Genomic Coordinates Reverse (-)

2758995 .. 2762183

Gene Structure 3189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G038300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAAGCTTTTTGGTTGGATGCAAAATAAGCTTAATGGAAAGCAGGGGAACAAGAAACCAAATACAGTTCCTATTACTACTCATCCTGCAAAACAAGAGCCTCGTGAAGAATTCAGTGACTGGCCTCATGGATTACTAGCAATTGGAACTTTTGGAAACAATGATTTGAAAGAAAATGCAGCTGAAAGCCAAGATATTCAGGAAGATCCAACTTCATCAGAAGAAATACTAGATAATTTCACTCCTGAAGAGGTTGGCAAATTACATAAAGAGTTAACAAAGCTCTTAACGCGAAAACCAAACATCGAAAAGGAAATCGCAGATCTTCCATTGGACAGATTTCTAAACTGCCCATCAAGCTTGGAGGTTGATCGGAGAAACAGCAATGCACTTTGCTCCGATTCAGCAGATGATCACAAGGATGAAGACATTGAGAAGACTATTAGTGTCATACTTGGTAGATGCAAAGAAATTTGTGGAGATAAGAATAAGAAGGCAATTGGGAAGAAATCTATTTCTTTTCTTCTCAAGAAGATGTTTGTTTGCAGAAGTGGATTTGCACCACAACCAAGTTTGAGAGATACACTTCAAGAGTCAAGAATGGAGAAGCTTTTGAGGGTAATGCTTAACAAGAAGATCATCAATCCGCAAGGATCTTCTCGAGCAGCATCGATGAAGAAATACCTGGAGGATAGACAGATTCCAACAAAGAAGGAAAGTAACACTGAAGATGATACAAAAGAGAAAATTAATAATGGATGTAAATGGGTCAAGACAGATTCTGAATATATAGTCCTAGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

269

Amino Acids

30.46

Weight (kDa)

7.56

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17400 AT1G17400 AT1G17400 AT1G72490 AT1G72490 AT1G72490
fragaria_vesca	FvH4_6g35070
malus_domestica	MD09G1179400.v1.1 MD17G1165000.v1.1
prunus_persica	Prupe.3G038300_v2.0.a1 Prupe.3G038300_v2.0.a1
pyrus_communis	pycom17g15790
rosa_chinensis	RchiOBHm_Chr2g0146241
rosa_laevigata	RLG00000020189
rosa_multiflora	Rmu_sc0002054.1_g000019
rosa_roxburghii	Rroxscaffold_152G00434940 Rroxscaffold_2G00100210
rosa_rugosa	Rorug02G0393800 Rorug02G0393900.1
rosa_samantha	Rh2AG450100 Rh2BG462300 Rh2CG436900 Rh2DG471500
rosa_wichuraiana	Rw2G036730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	292
AciI	CCGC	1 cut(s)	647
AclWI	GGATC	2 cut(s)	200, 661
AcsI	RAATTY	3 cut(s)	110, 471, 801
AcuI	CTGAAG	2 cut(s)	267, 747
AgsI	TTSAA	2 cut(s)	169, 590
AjnI	CCWGG	1 cut(s)	684
AluBI	AGCT	6 cut(s)	7, 31, 182, 283, 360, 610
AluI	AGCT	6 cut(s)	7, 31, 182, 283, 360, 610
AlwI	GGATC	2 cut(s)	200, 661
AlwNI	CAGNNNCTG	2 cut(s)	120, 782
Ama87I	CYCGRG	1 cut(s)	660
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	2 cut(s)	179, 665
ApoI	RAATTY	3 cut(s)	110, 471, 801
AseI	ATTAAT	1 cut(s)	750
AvaI	CYCGRG	1 cut(s)	660
BauI	CACGAG	1 cut(s)	102
BbsI	GAAGAC	2 cut(s)	432, 443
BbvI	GCAGC	2 cut(s)	191, 677
BccI	CCATC	1 cut(s)	361
BciT130I	CCWGG	1 cut(s)	686
BclI	TGATCA	1 cut(s)	412
BfaI	CTAG	3 cut(s)	137, 230, 797
BglII	AGATCT	1 cut(s)	322
BisI	GCNGC	2 cut(s)	180, 666
BlsI	GCNGC	2 cut(s)	181, 667
Bme1390I	CCNGG	1 cut(s)	686
BmeT110I	CYCGRG	1 cut(s)	660
BmrFI	CCNGG	1 cut(s)	686
BmsI	GCATC	3 cut(s)	9, 452, 677
BpiI	GAAGAC	2 cut(s)	432, 443
BpmI	CTGGAG	1 cut(s)	707
BpuEI	CTTGAG	1 cut(s)	512
Bsa29I	ATCGAT	1 cut(s)	671
Bse1I	ACTGG	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	391
BseBI	CCWGG	1 cut(s)	686
BseCI	ATCGAT	1 cut(s)	671
BseGI	GGATG	4 cut(s)	24, 82, 427, 764
BseMI	GCAATG	1 cut(s)	391
BseNI	ACTGG	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	191, 677
Bsh1236I	CGCG	1 cut(s)	292
BshFI	GGCC	1 cut(s)	124
BshVI	ATCGAT	1 cut(s)	671
BsiHKCI	CYCGRG	1 cut(s)	660
BsnI	GGCC	1 cut(s)	124
BsoBI	CYCGRG	1 cut(s)	660
Bsp143I	GATC	6 cut(s)	205, 322, 370, 412, 636, 653
BspACI	CCGC	1 cut(s)	647
BspANI	GGCC	1 cut(s)	124
BspDI	ATCGAT	1 cut(s)	671
BspFNI	CGCG	1 cut(s)	292
BspPI	GGATC	2 cut(s)	200, 661
BsrDI	GCAATG	1 cut(s)	391
BsrI	ACTGG	1 cut(s)	125
BssMI	GATC	6 cut(s)	205, 322, 370, 412, 636, 653
BssSI	CACGAG	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	686
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	243
BstF5I	GGATG	4 cut(s)	24, 82, 427, 764
BstFNI	CGCG	1 cut(s)	292
BstKTI	GATC	6 cut(s)	208, 325, 373, 415, 639, 656
BstMBI	GATC	6 cut(s)	205, 322, 370, 412, 636, 653
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 289, 357
BstNI	CCWGG	1 cut(s)	686
BstSCI	CCNGG	1 cut(s)	684
BstUI	CGCG	1 cut(s)	292
BstV1I	GCAGC	2 cut(s)	191, 677
BstV2I	GAAGAC	2 cut(s)	432, 443
BstX2I	RGATCY	3 cut(s)	205, 322, 653
BstYI	RGATCY	3 cut(s)	205, 322, 653
Bsu15I	ATCGAT	1 cut(s)	671
BsuRI	GGCC	1 cut(s)	124
BsuTUI	ATCGAT	1 cut(s)	671
BtsCI	GGATG	4 cut(s)	24, 82, 427, 764
BtsIMutI	CAGTG	2 cut(s)	121, 723
CaiI	CAGNNNCTG	2 cut(s)	120, 782
ClaI	ATCGAT	1 cut(s)	671
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	9 cut(s)	7, 31, 100, 124, 182, 189, 283, 360, 610
CviKI_1	RGCY	9 cut(s)	7, 31, 100, 124, 182, 189, 283, 360, 610
DpnI	GATC	6 cut(s)	207, 324, 372, 414, 638, 655
DpnII	GATC	6 cut(s)	205, 322, 370, 412, 636, 653
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco57I	CTGAAG	2 cut(s)	267, 747
Eco88I	CYCGRG	1 cut(s)	660
EcoRI	GAATTC	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	684
FaeI	CATG	1 cut(s)	131
FaiI	YATR	5 cut(s)	129, 267, 452, 789, 791
FatI	CATG	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	180, 666
FokI	GGATG	4 cut(s)	31, 69, 434, 771
Fsp4HI	GCNGC	2 cut(s)	180, 666
FspBI	CTAG	3 cut(s)	137, 230, 797
GluI	GCNGC	2 cut(s)	180, 666
GsuI	CTGGAG	1 cut(s)	707
HaeIII	GGCC	1 cut(s)	124
Hin1II	CATG	1 cut(s)	131
HincII	GTYRAC	1 cut(s)	276
HindII	GTYRAC	1 cut(s)	276
HindIII	AAGCTT	4 cut(s)	5, 29, 358, 608
HinfI	GANTC	4 cut(s)	401, 593, 700, 779
HpaI	GTTAAC	1 cut(s)	276
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188I	TCNGA	4 cut(s)	220, 375, 400, 784
Hpy188III	TCNNGA	8 cut(s)	104, 200, 245, 529, 590, 597, 660, 772
Hpy8I	GTNNAC	1 cut(s)	276
HpyAV	CCTTC	2 cut(s)	487, 706
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	7 cut(s)	22, 89, 179, 389, 465, 546, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 289, 357
Hsp92II	CATG	1 cut(s)	131
Ksp22I	TGATCA	1 cut(s)	412
KspAI	GTTAAC	1 cut(s)	276
Kzo9I	GATC	6 cut(s)	205, 322, 370, 412, 636, 653
LmnI	GCTCC	1 cut(s)	401
LpnPI	CCDG	7 cut(s)	29, 99, 106, 185, 258, 671, 698
Lsp1109I	GCAGC	2 cut(s)	191, 677
LweI	GCATC	3 cut(s)	9, 452, 677
MaeI	CTAG	3 cut(s)	137, 230, 797
MaeIII	GTNAC	2 cut(s)	116, 719
MalI	GATC	6 cut(s)	207, 324, 372, 414, 638, 655
MboI	GATC	6 cut(s)	205, 322, 370, 412, 636, 653
MfeI	CAATTG	2 cut(s)	141, 498
MflI	RGATCY	3 cut(s)	205, 322, 653
MluCI	AATT	8 cut(s)	110, 141, 235, 260, 471, 498, 747, 801
MlyI	GAGTC	1 cut(s)	602
MmeI	TCCRAC	2 cut(s)	233, 728
MnlI	CCTC	6 cut(s)	111, 135, 244, 358, 609, 682
MseI	TTAA	5 cut(s)	33, 275, 287, 627, 750
MslI	CAYNNNNRTG	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	686
MunI	CAATTG	2 cut(s)	141, 498
MvaI	CCWGG	1 cut(s)	686
MvnI	CGCG	1 cut(s)	292
MwoI	GCNNNNNNNGC	3 cut(s)	28, 289, 357
NdeII	GATC	6 cut(s)	205, 322, 370, 412, 636, 653
NlaIII	CATG	1 cut(s)	131
NmuCI	GTSAC	1 cut(s)	116
PaeR7I	CTCGAG	1 cut(s)	660
PfeI	GAWTC	3 cut(s)	401, 700, 779
PkrI	GCNGC	2 cut(s)	181, 667
PleI	GAGTC	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	601
PshBI	ATTAAT	1 cut(s)	750
Psp6I	CCWGG	1 cut(s)	684
PspGI	CCWGG	1 cut(s)	684
PstNI	CAGNNNCTG	2 cut(s)	120, 782
PsuI	RGATCY	3 cut(s)	205, 322, 653
PvuII	CAGCTG	1 cut(s)	182
RseI	CAYNNNNRTG	1 cut(s)	420
SaqAI	TTAA	5 cut(s)	33, 275, 287, 627, 750
SatI	GCNGC	2 cut(s)	180, 666
Sau3AI	GATC	6 cut(s)	205, 322, 370, 412, 636, 653
SchI	GAGTC	1 cut(s)	602
ScrFI	CCNGG	1 cut(s)	686
SetI	ASST	9 cut(s)	9, 33, 184, 255, 285, 362, 369, 612, 687
SfaNI	GCATC	3 cut(s)	9, 452, 677
Sfr274I	CTCGAG	1 cut(s)	660
SlaI	CTCGAG	1 cut(s)	660
SmiMI	CAYNNNNRTG	1 cut(s)	420
SmlI	CTYRAG	2 cut(s)	527, 660
SmoI	CTYRAG	2 cut(s)	527, 660
Sse9I	AATT	8 cut(s)	110, 141, 235, 260, 471, 498, 747, 801
SsiI	CCGC	1 cut(s)	647
SspMI	CTAG	3 cut(s)	137, 230, 797
StyD4I	CCNGG	1 cut(s)	684
TaaI	ACNGT	1 cut(s)	67
TaqI	TCGA	3 cut(s)	306, 661, 671
TasI	AATT	8 cut(s)	110, 141, 235, 260, 471, 498, 747, 801
TfiI	GAWTC	3 cut(s)	401, 700, 779
Tru1I	TTAA	5 cut(s)	33, 275, 287, 627, 750
Tru9I	TTAA	5 cut(s)	33, 275, 287, 627, 750
TscAI	CASTG	2 cut(s)	121, 730
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	2 cut(s)	179, 665
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	4 cut(s)	17, 204, 438, 689
TspRI	CASTG	2 cut(s)	121, 730
VspI	ATTAAT	1 cut(s)	750
XapI	RAATTY	3 cut(s)	110, 471, 801
XhoI	CTCGAG	1 cut(s)	660
XspI	CTAG	3 cut(s)	137, 230, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.