Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000152

Orthogroup ID

OG0007944

Physical Location & Seq

Genomic Coordinates Forward (+)

482261 .. 484991

Gene Structure 2731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_152G00434940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAGGCTTTTCGGTTGGGTGCAAGATAAGCTTAATGGGAAGCAGGGGAACAAGAAACCAAATACAGCTTCGACTAGTACCCATCATGTAAAACCAGAGCCTCGTGAAGAATTCAATGACTGGCCTCATGGTTTACTAGCAATCGGAACTTTTGGAAACAACAATTTGAAAGAGAATACTGATCATCGAAGCCAAAATATTCAGGAAGAACCATCTTCATCAGATGAAATACTAGAAAATTTCACTCCTGAAGAAGTTGGTAAGTTACATAAAGAGCTAACGAAACTCTTGACACGAAAACCAGACATTGAAAAGGAAATTGCAGCTCTTCCGTTGGACAGATTTCTAAATTGTCCATCAAGCTTGGAGGTTGATAGGAGAACAAGCAACGTGCTTTGCTCTGATTCAGATGATCCCAAAGATGAAGATATTGAGAAAACCATTAGTGTTATACTTGGTAGATGCAAAGACATTTGTGCAGATAGTAACAAGAAGGCGATTGGGAAGAAATCAATTTCTTTTCTTCTCAAGAAGATGTTTGTTTGTAGAAGTGGATTTGCACCAGCACCAAGTTTGAGAGATACATTTCAAGAGTCAAGAATGGAGAAGTTTTTGAGGCTAATGCTTAACAAGAAGATCATCAATCAGCAAAGTTCTTCTCGAGCATCATCAATGAAGAAATACCTTGAGGATACTAGACAAAGTCCACCCAAGAAGGGAAATAATAATGAAGAAAATACAAAAGAGAAAATCAATGATGGATGTAAATGGGTCAAGACTGATTCTGAATCTTCAGAAAAGTTCATGCCTCGCATTTATGAACTCAAATACTTGAAAGTGCAAAAAGTCCGAGAAATTTCAGATCAGGGGCAACAGATCATCAATAAGTTCATCCTCATCGGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

302

Amino Acids

34.61

Weight (kDa)

8.95

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17400 AT1G17400 AT1G17400 AT1G72490 AT1G72490 AT1G72490
fragaria_vesca	FvH4_6g35070
malus_domestica	MD09G1179400.v1.1 MD17G1165000.v1.1
prunus_persica	Prupe.3G038300_v2.0.a1 Prupe.3G038300_v2.0.a1
pyrus_communis	pycom17g15790
rosa_chinensis	RchiOBHm_Chr2g0146241
rosa_laevigata	RLG00000020189
rosa_multiflora	Rmu_sc0002054.1_g000019
rosa_roxburghii	Rroxscaffold_152G00434940 Rroxscaffold_2G00100210
rosa_rugosa	Rorug02G0393800 Rorug02G0393900.1
rosa_samantha	Rh2AG450100 Rh2BG462300 Rh2CG436900 Rh2DG471500
rosa_wichuraiana	Rw2G036730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	407
AcsI	RAATTY	3 cut(s)	110, 238, 855
AcuI	CTGAAG	2 cut(s)	270, 777
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	1 cut(s)	716
AgsI	TTSAA	5 cut(s)	115, 169, 311, 590, 835
AhlI	ACTAGT	1 cut(s)	74
AjuI	GAANNNNNNNTTGG	2 cut(s)	52, 84
AluBI	AGCT	5 cut(s)	31, 68, 277, 326, 363
AluI	AGCT	5 cut(s)	31, 68, 277, 326, 363
AlwI	GGATC	1 cut(s)	407
Ama87I	CYCGRG	1 cut(s)	660
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	3 cut(s)	110, 238, 855
AvaI	CYCGRG	1 cut(s)	660
BauI	CACGAG	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	335
BccI	CCATC	4 cut(s)	90, 220, 364, 752
BciVI	GTATCC	1 cut(s)	685
BclI	TGATCA	1 cut(s)	181
BcuI	ACTAGT	1 cut(s)	74
BfaI	CTAG	4 cut(s)	75, 137, 233, 696
BfuI	GTATCC	1 cut(s)	685
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
BmeT110I	CYCGRG	1 cut(s)	660
BmsI	GCATC	2 cut(s)	452, 674
BpuEI	CTTGAG	2 cut(s)	512, 707
Bsc4I	CCNNNNNNNGG	1 cut(s)	716
Bse1I	ACTGG	1 cut(s)	125
BseGI	GGATG	2 cut(s)	767, 891
BseLI	CCNNNNNNNGG	1 cut(s)	716
BseNI	ACTGG	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	335
BsgI	GTGCAG	1 cut(s)	498
BshFI	GGCC	1 cut(s)	124
BsiHKCI	CYCGRG	1 cut(s)	660
BslI	CCNNNNNNNGG	1 cut(s)	716
BsnI	GGCC	1 cut(s)	124
BsoBI	CYCGRG	1 cut(s)	660
Bsp143I	GATC	5 cut(s)	181, 412, 636, 862, 876
BspANI	GGCC	1 cut(s)	124
BspPI	GGATC	1 cut(s)	407
BspQI	GCTCTTC	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	125
BssMI	GATC	5 cut(s)	181, 412, 636, 862, 876
BssSI	CACGAG	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	102
Bst6I	CTCTTC	1 cut(s)	333
BstF5I	GGATG	2 cut(s)	767, 891
BstKTI	GATC	5 cut(s)	184, 415, 639, 865, 879
BstMBI	GATC	5 cut(s)	181, 412, 636, 862, 876
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	335
BsuI	GTATCC	1 cut(s)	685
BsuRI	GGCC	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	767, 891
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	3 cut(s)	86, 128, 805
CviQI	GTAC	1 cut(s)	78
DpnI	GATC	5 cut(s)	183, 414, 638, 864, 878
DpnII	GATC	5 cut(s)	181, 412, 636, 862, 876
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco57I	CTGAAG	2 cut(s)	270, 777
Eco88I	CYCGRG	1 cut(s)	660
EcoRI	GAATTC	1 cut(s)	110
FaeI	CATG	3 cut(s)	89, 131, 808
FaiI	YATR	6 cut(s)	87, 129, 270, 452, 806, 819
FalI	AAGNNNNNCTT	2 cut(s)	15, 47
FatI	CATG	3 cut(s)	85, 127, 804
FbaI	TGATCA	1 cut(s)	181
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	2 cut(s)	774, 878
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	4 cut(s)	75, 137, 233, 696
GluI	GCNGC	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	124
Hin1II	CATG	3 cut(s)	89, 131, 808
HindIII	AAGCTT	2 cut(s)	29, 361
HinfI	GANTC	4 cut(s)	404, 593, 782, 788
Hpy166II	GTNNAC	2 cut(s)	134, 707
Hpy188I	TCNGA	9 cut(s)	146, 223, 403, 409, 787, 796, 851, 862, 908
Hpy188III	TCNNGA	9 cut(s)	104, 203, 248, 289, 529, 590, 597, 660, 775
Hpy8I	GTNNAC	2 cut(s)	134, 707
HpyAV	CCTTC	2 cut(s)	487, 709
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	6 cut(s)	22, 323, 465, 479, 560, 841
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	3 cut(s)	89, 131, 808
Ksp22I	TGATCA	1 cut(s)	181
Kzo9I	GATC	5 cut(s)	181, 412, 636, 862, 876
LguI	GCTCTTC	1 cut(s)	333
LpnPI	CCDG	8 cut(s)	29, 106, 108, 188, 261, 315, 576, 851
Lsp1109I	GCAGC	1 cut(s)	335
LweI	GCATC	2 cut(s)	452, 674
MaeI	CTAG	4 cut(s)	75, 137, 233, 696
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	2 cut(s)	264, 485
MalI	GATC	5 cut(s)	183, 414, 638, 864, 878
MboI	GATC	5 cut(s)	181, 412, 636, 862, 876
MluCI	AATT	7 cut(s)	110, 163, 238, 318, 349, 513, 855
MlyI	GAGTC	1 cut(s)	602
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	7 cut(s)	111, 135, 361, 609, 682, 819, 905
MseI	TTAA	2 cut(s)	33, 627
MwoI	GCNNNNNNNGC	1 cut(s)	28
NdeII	GATC	5 cut(s)	181, 412, 636, 862, 876
NlaIII	CATG	3 cut(s)	89, 131, 808
PaeR7I	CTCGAG	1 cut(s)	660
PciSI	GCTCTTC	1 cut(s)	333
PfeI	GAWTC	3 cut(s)	404, 782, 788
PflFI	GACNNNGTC	1 cut(s)	702
PkrI	GCNGC	1 cut(s)	325
PleI	GAGTC	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	601
PsyI	GACNNNGTC	1 cut(s)	702
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	2 cut(s)	33, 627
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	5 cut(s)	181, 412, 636, 862, 876
SchI	GAGTC	1 cut(s)	602
SetI	ASST	8 cut(s)	33, 70, 279, 328, 365, 372, 393, 687
SfaNI	GCATC	2 cut(s)	452, 674
Sfr274I	CTCGAG	1 cut(s)	660
SlaI	CTCGAG	1 cut(s)	660
SmlI	CTYRAG	3 cut(s)	527, 660, 686
SmoI	CTYRAG	3 cut(s)	527, 660, 686
SpeI	ACTAGT	1 cut(s)	74
Sse9I	AATT	7 cut(s)	110, 163, 238, 318, 349, 513, 855
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	4 cut(s)	75, 137, 233, 696
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	3 cut(s)	71, 187, 661
TasI	AATT	7 cut(s)	110, 163, 238, 318, 349, 513, 855
TfiI	GAWTC	3 cut(s)	404, 782, 788
Tru1I	TTAA	2 cut(s)	33, 627
Tru9I	TTAA	2 cut(s)	33, 627
TseI	GCWGC	1 cut(s)	323
TspDTI	ATGAA	8 cut(s)	207, 240, 438, 689, 744, 793, 834, 880
TspGWI	ACGGA	1 cut(s)	321
Tth111I	GACNNNGTC	1 cut(s)	702
XapI	RAATTY	3 cut(s)	110, 238, 855
XhoI	CTCGAG	1 cut(s)	660
XspI	CTAG	4 cut(s)	75, 137, 233, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.