Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007944

Physical Location & Seq

Genomic Coordinates Forward (+)

66348011 .. 66350724

Gene Structure 2714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG450100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGCTGCAATCCAAGCTTTTCGGTTGGGTGCAAGATAAGCTTAATGGGAAGCAGGGGAACAAGAAACCAAATACAGCTTCGACTAGTACCCATCATGTAAAACCAGAGCCTCGTGAAGAATTCAATGACTGGCCTCATGGTTTACTAGCAATCGGAACTTTTGGAAACAACAATTTGAAAGAGAATACTGATCATCGAAGCCAAAATATTCAGGAAGAACCATCTTCATCAGATGAAATACTAGAAAATTTCACTCCTGAAGAAGTTGGTAAGTTACATAAAGAGCTAACGAAACTCTTGACACGAAAACCAGACATTGAAAAGGAAATTGCAGCTCTTCCGTTGGACAGATTTCTAAATTGTCCATCAAGCTTGGAGGTTGATAGGAGAACAAGCAACGTGCTTTGCTCTGATTCAGATGATCCCAAAGATGAAGATATTGAGAAAACCATTAGTGTTATACTTGGTAGATGCAAAGACATTTGTGCAGATAGTAACAAGAAGGCGATTGGGAAGAAATCAATTTCTTTTCTTCTCAAGAAGATGTTTGTTTGTAGAAGTGGATTTGCACCAGCACCAAGTTTGAGAGATACATTTCAAGAGTCAAGAATGGAGAAGTTTTTGAGGCTAATGCTTAACAAGAAGATCATCAATCCGCAAAGTTCTTCTCGAGCATCATCAATGAAGAAATACCTTGACGATACTAGACAAAGTCCAACCAAGAAGGGAAATAATAATGAAGAAAATACAAAAGAGAAAATCAATGATGGATGTAAATGGGTCAAGACTGATTCTGAATATATAGTCCTAGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

272

Amino Acids

30.93

Weight (kDa)

8.4

Isoelectric Point (pI)

53.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17400 AT1G17400 AT1G17400 AT1G72490 AT1G72490 AT1G72490
fragaria_vesca	FvH4_6g35070
malus_domestica	MD09G1179400.v1.1 MD17G1165000.v1.1
prunus_persica	Prupe.3G038300_v2.0.a1 Prupe.3G038300_v2.0.a1
pyrus_communis	pycom17g15790
rosa_chinensis	RchiOBHm_Chr2g0146241
rosa_laevigata	RLG00000020189
rosa_multiflora	Rmu_sc0002054.1_g000019
rosa_roxburghii	Rroxscaffold_152G00434940 Rroxscaffold_2G00100210
rosa_rugosa	Rorug02G0393800 Rorug02G0393900.1
rosa_samantha	Rh2AG450100 Rh2BG462300 Rh2CG436900 Rh2DG471500
rosa_wichuraiana	Rw2G036730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	656
AclWI	GGATC	1 cut(s)	416
AcsI	RAATTY	2 cut(s)	119, 247
AcuI	CTGAAG	1 cut(s)	279
AfaI	GTAC	1 cut(s)	88
AgsI	TTSAA	4 cut(s)	124, 178, 320, 599
AhlI	ACTAGT	1 cut(s)	83
AjuI	GAANNNNNNNTTGG	2 cut(s)	61, 93
AluBI	AGCT	6 cut(s)	16, 40, 77, 286, 335, 372
AluI	AGCT	6 cut(s)	16, 40, 77, 286, 335, 372
AlwI	GGATC	1 cut(s)	416
Ama87I	CYCGRG	1 cut(s)	669
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	2 cut(s)	4, 332
ApoI	RAATTY	2 cut(s)	119, 247
AvaI	CYCGRG	1 cut(s)	669
BauI	CACGAG	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	344
BccI	CCATC	4 cut(s)	99, 229, 373, 761
BclI	TGATCA	1 cut(s)	190
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	5 cut(s)	84, 146, 242, 705, 809
BisI	GCNGC	2 cut(s)	5, 333
BlsI	GCNGC	2 cut(s)	6, 334
BmeT110I	CYCGRG	1 cut(s)	669
BmsI	GCATC	2 cut(s)	461, 683
BpuEI	CTTGAG	1 cut(s)	521
Bse1I	ACTGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	776
BseNI	ACTGG	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	344
BsgI	GTGCAG	1 cut(s)	507
BshFI	GGCC	1 cut(s)	133
BsiHKCI	CYCGRG	1 cut(s)	669
BsnI	GGCC	1 cut(s)	133
BsoBI	CYCGRG	1 cut(s)	669
Bsp143I	GATC	3 cut(s)	190, 421, 645
BspACI	CCGC	1 cut(s)	656
BspANI	GGCC	1 cut(s)	133
BspPI	GGATC	1 cut(s)	416
BspQI	GCTCTTC	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	134
BssMI	GATC	3 cut(s)	190, 421, 645
BssSI	CACGAG	1 cut(s)	111
Bst2BI	CACGAG	1 cut(s)	111
Bst6I	CTCTTC	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	776
BstKTI	GATC	3 cut(s)	193, 424, 648
BstMBI	GATC	3 cut(s)	190, 421, 645
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 37
BstV1I	GCAGC	1 cut(s)	344
BsuRI	GGCC	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	776
Csp6I	GTAC	1 cut(s)	87
CviAII	CATG	2 cut(s)	95, 137
CviQI	GTAC	1 cut(s)	87
DpnI	GATC	3 cut(s)	192, 423, 647
DpnII	GATC	3 cut(s)	190, 421, 645
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	669
EcoRI	GAATTC	1 cut(s)	119
FaeI	CATG	2 cut(s)	98, 140
FaiI	YATR	7 cut(s)	96, 138, 279, 461, 801, 803, 817
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FatI	CATG	2 cut(s)	94, 136
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	2 cut(s)	5, 333
FokI	GGATG	1 cut(s)	783
Fsp4HI	GCNGC	2 cut(s)	5, 333
FspBI	CTAG	5 cut(s)	84, 146, 242, 705, 809
GluI	GCNGC	2 cut(s)	5, 333
HaeIII	GGCC	1 cut(s)	133
Hin1II	CATG	2 cut(s)	98, 140
HindIII	AAGCTT	3 cut(s)	14, 38, 370
HinfI	GANTC	3 cut(s)	413, 602, 791
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	5 cut(s)	155, 232, 412, 418, 796
Hpy188III	TCNNGA	9 cut(s)	113, 212, 257, 298, 538, 599, 606, 669, 784
Hpy8I	GTNNAC	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	496, 718
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	6 cut(s)	7, 31, 332, 474, 488, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 37
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	2 cut(s)	98, 140
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	190, 421, 645
LguI	GCTCTTC	1 cut(s)	342
LpnPI	CCDG	7 cut(s)	38, 115, 117, 197, 270, 324, 585
Lsp1109I	GCAGC	1 cut(s)	344
LweI	GCATC	2 cut(s)	461, 683
MaeI	CTAG	5 cut(s)	84, 146, 242, 705, 809
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	2 cut(s)	273, 494
MalI	GATC	3 cut(s)	192, 423, 647
MboI	GATC	3 cut(s)	190, 421, 645
MluCI	AATT	6 cut(s)	119, 172, 247, 327, 358, 522
MlyI	GAGTC	1 cut(s)	611
MmeI	TCCRAC	2 cut(s)	324, 740
MnlI	CCTC	4 cut(s)	120, 144, 370, 618
MseI	TTAA	2 cut(s)	42, 636
MwoI	GCNNNNNNNGC	2 cut(s)	13, 37
NdeII	GATC	3 cut(s)	190, 421, 645
NlaIII	CATG	2 cut(s)	98, 140
PaeR7I	CTCGAG	1 cut(s)	669
PciSI	GCTCTTC	1 cut(s)	342
PfeI	GAWTC	2 cut(s)	413, 791
PflFI	GACNNNGTC	1 cut(s)	711
PkrI	GCNGC	2 cut(s)	6, 334
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
PsyI	GACNNNGTC	1 cut(s)	711
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	342
SaqAI	TTAA	2 cut(s)	42, 636
SatI	GCNGC	2 cut(s)	5, 333
Sau3AI	GATC	3 cut(s)	190, 421, 645
SchI	GAGTC	1 cut(s)	611
SetI	ASST	9 cut(s)	18, 42, 79, 288, 337, 374, 381, 402, 696
SfaNI	GCATC	2 cut(s)	461, 683
Sfr274I	CTCGAG	1 cut(s)	669
SlaI	CTCGAG	1 cut(s)	669
SmlI	CTYRAG	2 cut(s)	536, 669
SmoI	CTYRAG	2 cut(s)	536, 669
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	6 cut(s)	119, 172, 247, 327, 358, 522
SsiI	CCGC	1 cut(s)	656
SspI	AATATT	1 cut(s)	208
SspMI	CTAG	5 cut(s)	84, 146, 242, 705, 809
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	3 cut(s)	80, 196, 670
TasI	AATT	6 cut(s)	119, 172, 247, 327, 358, 522
TfiI	GAWTC	2 cut(s)	413, 791
Tru1I	TTAA	2 cut(s)	42, 636
Tru9I	TTAA	2 cut(s)	42, 636
TseI	GCWGC	2 cut(s)	4, 332
TspDTI	ATGAA	5 cut(s)	216, 249, 447, 698, 753
TspGWI	ACGGA	1 cut(s)	330
Tth111I	GACNNNGTC	1 cut(s)	711
XapI	RAATTY	2 cut(s)	119, 247
XhoI	CTCGAG	1 cut(s)	669
XspI	CTAG	5 cut(s)	84, 146, 242, 705, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.