Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007944

Physical Location & Seq

Genomic Coordinates Reverse (-)

27288900 .. 27291107

Gene Structure 2208 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G72490.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAAGTTTTTCGGGTGGATGCAGAACAAGCTACATGGGAAACAAGAGATTACTCATAGACCAAGCATATCCTCTGCTTCTTCTCATCATCCGAGAGAGGAGTTTAACGATTGGCCTCACGGATTACTCGCGATTGGTACATTCGGTAACAAAAAGCAGACACCACAAACACTTGATCAAGAAGTGATTCAAGAAGAGACAGTGTCTAACTTACACGTGGAAGGTCGTCAAGCACAAGATACAGATCAAGAGCTTTCTTCCTCCGATGATCTAGAAGAAGATTTCACTCCCGAAGAAGTTGGGAAACTACAGAAGGAGCTGACGAAACTCTTGACGAGAAGGAGTAAGAAAAGGAAGTCTGATGTGAATCGAGAATTAGCGAATCTTCCTTTGGATAGATTCTTGAATTGTCCTTCGAGTCTTGAGGTCGATAGAAGAATCAGTAACGCGCTTTGTGATGAGAAGGAGGAAGACATTGAGCGTACAATCAGTGTTATCCTAGGGAGATGCAAAGCTATTTCTACAGAGAGCAAGAACAAGACGAAGAAGAATAAAAGAGATTTGAGCAAAACCTCTGTTTCTCATCTTCTCAAGAAGATGTTTGTCTGTACAGAAGGTTTTTCTCCCGTTCCTCGCCCTATCTTGAGAGACACGTTTCAAGAAACAAGAATGGAGAAGTTGCTGAGAATGATGCTACACAAGAAAGTTAACACTCAAGCTTCATCAAAGCAAACATCGACAAAAAAATACTTGCAAGACAAGCAACAGCTCTCGTTGAAGAACGAGGAAGAAGAAGGACGAAGCAGTAACGATGGGGGGAAATGGGTCAAAACAGATTCTGATTTCATTGTTCTTGAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

287

Amino Acids

33.05

Weight (kDa)

8.53

Isoelectric Point (pI)

62.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17400 AT1G17400 AT1G17400 AT1G72490 AT1G72490 AT1G72490
fragaria_vesca	FvH4_6g35070
malus_domestica	MD09G1179400.v1.1 MD17G1165000.v1.1
prunus_persica	Prupe.3G038300_v2.0.a1 Prupe.3G038300_v2.0.a1
pyrus_communis	pycom17g15790
rosa_chinensis	RchiOBHm_Chr2g0146241
rosa_laevigata	RLG00000020189
rosa_multiflora	Rmu_sc0002054.1_g000019
rosa_roxburghii	Rroxscaffold_152G00434940 Rroxscaffold_2G00100210
rosa_rugosa	Rorug02G0393800 Rorug02G0393900.1
rosa_samantha	Rh2AG450100 Rh2BG462300 Rh2CG436900 Rh2DG471500
rosa_wichuraiana	Rw2G036730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	131, 449
AcvI	CACGTG	1 cut(s)	217
AfaI	GTAC	3 cut(s)	139, 484, 610
AflIII	ACRYGT	2 cut(s)	214, 651
AgsI	TTSAA	4 cut(s)	191, 406, 659, 778
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AluBI	AGCT	6 cut(s)	31, 253, 319, 515, 719, 769
AluI	AGCT	6 cut(s)	31, 253, 319, 515, 719, 769
Alw26I	GTCTC	2 cut(s)	191, 642
AlwNI	CAGNNNCTG	1 cut(s)	839
AoxI	GGCC	1 cut(s)	113
Asp700I	GAANNNNTTC	2 cut(s)	8, 186
AspA2I	CCTAGG	1 cut(s)	499
AspLEI	GCGC	1 cut(s)	451
AvrII	CCTAGG	1 cut(s)	499
BbrPI	CACGTG	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	477
BccI	CCATC	1 cut(s)	806
BclI	TGATCA	1 cut(s)	175
BcoDI	GTCTC	2 cut(s)	191, 642
BfaI	CTAG	2 cut(s)	272, 500
BfmI	CTRYAG	2 cut(s)	308, 522
BglII	AGATCT	1 cut(s)	858
BlnI	CCTAGG	1 cut(s)	499
BmsI	GCATC	3 cut(s)	9, 497, 681
BpiI	GAAGAC	1 cut(s)	477
BpuEI	CTTGAG	4 cut(s)	443, 575, 664, 699
BsaAI	YACGTR	1 cut(s)	217
BsaBI	GATNNNNATC	2 cut(s)	243, 366
BsaJI	CCNNGG	1 cut(s)	499
Bse8I	GATNNNNATC	2 cut(s)	243, 366
BseDI	CCNNGG	1 cut(s)	499
BseGI	GGATG	2 cut(s)	24, 88
BseJI	GATNNNNATC	2 cut(s)	243, 366
BseMII	CTCAG	1 cut(s)	674
BseRI	GAGGAG	1 cut(s)	113
Bsh1236I	CGCG	2 cut(s)	131, 449
BshFI	GGCC	1 cut(s)	115
BsmAI	GTCTC	2 cut(s)	191, 642
BsnI	GGCC	1 cut(s)	115
Bsp1407I	TGTACA	1 cut(s)	608
Bsp143I	GATC	4 cut(s)	175, 244, 268, 858
Bsp68I	TCGCGA	1 cut(s)	131
BspANI	GGCC	1 cut(s)	115
BspCNI	CTCAG	1 cut(s)	675
BspFNI	CGCG	2 cut(s)	131, 449
BsrGI	TGTACA	1 cut(s)	608
BssECI	CCNNGG	1 cut(s)	499
BssMI	GATC	4 cut(s)	175, 244, 268, 858
BssT1I	CCWWGG	1 cut(s)	499
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	189
BstAUI	TGTACA	1 cut(s)	608
BstBAI	YACGTR	1 cut(s)	217
BstDEI	CTNAG	1 cut(s)	683
BstF5I	GGATG	2 cut(s)	24, 88
BstFNI	CGCG	2 cut(s)	131, 449
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	4 cut(s)	178, 247, 271, 861
BstMAI	GTCTC	2 cut(s)	191, 642
BstMBI	GATC	4 cut(s)	175, 244, 268, 858
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 760
BstSFI	CTRYAG	2 cut(s)	308, 522
BstUI	CGCG	2 cut(s)	131, 449
BstV2I	GAAGAC	1 cut(s)	477
BstX2I	RGATCY	1 cut(s)	858
BstYI	RGATCY	1 cut(s)	858
BsuRI	GGCC	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	24, 88
BtsIMutI	CAGTG	2 cut(s)	207, 496
BtuMI	TCGCGA	1 cut(s)	131
CaiI	CAGNNNCTG	1 cut(s)	839
CfoI	GCGC	1 cut(s)	451
Csp6I	GTAC	3 cut(s)	138, 483, 609
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	7 cut(s)	31, 115, 253, 319, 515, 719, 769
CviKI_1	RGCY	7 cut(s)	31, 115, 253, 319, 515, 719, 769
CviQI	GTAC	3 cut(s)	138, 483, 609
DdeI	CTNAG	1 cut(s)	683
DpnI	GATC	4 cut(s)	177, 246, 270, 860
DpnII	GATC	4 cut(s)	175, 244, 268, 858
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	499
Eco72I	CACGTG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	499
ErhI	CCWWGG	1 cut(s)	499
FaeI	CATG	1 cut(s)	38
FaiI	YATR	3 cut(s)	36, 57, 68
FatI	CATG	1 cut(s)	34
FbaI	TGATCA	1 cut(s)	175
FokI	GGATG	2 cut(s)	31, 75
FspBI	CTAG	2 cut(s)	272, 500
GlaI	GCGC	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	115
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	1 cut(s)	38
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HindIII	AAGCTT	1 cut(s)	717
HinfI	GANTC	7 cut(s)	187, 367, 382, 399, 418, 438, 836
HpaI	GTTAAC	1 cut(s)	709
Hpy166II	GTNNAC	1 cut(s)	709
Hpy188I	TCNGA	5 cut(s)	93, 265, 361, 841, 863
Hpy8I	GTNNAC	1 cut(s)	709
HpyAV	CCTTC	7 cut(s)	215, 307, 333, 423, 457, 608, 788
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	2 cut(s)	216, 653
HpyCH4V	TGCA	3 cut(s)	22, 510, 754
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 760
HpyF3I	CTNAG	1 cut(s)	683
HpySE526I	ACGT	2 cut(s)	216, 653
Hsp92II	CATG	1 cut(s)	38
HspAI	GCGC	1 cut(s)	449
Ksp22I	TGATCA	1 cut(s)	175
KspAI	GTTAAC	1 cut(s)	709
Kzo9I	GATC	4 cut(s)	175, 244, 268, 858
LmnI	GCTCC	1 cut(s)	316
LweI	GCATC	3 cut(s)	9, 497, 681
MaeI	CTAG	2 cut(s)	272, 500
MaeII	ACGT	2 cut(s)	216, 653
MaeIII	GTNAC	3 cut(s)	146, 443, 806
MalI	GATC	4 cut(s)	177, 246, 270, 860
MboI	GATC	4 cut(s)	175, 244, 268, 858
MflI	RGATCY	1 cut(s)	858
MluCI	AATT	2 cut(s)	374, 406
MlyI	GAGTC	1 cut(s)	427
MnlI	CCTC	9 cut(s)	82, 91, 126, 271, 418, 460, 583, 642, 778
MroXI	GAANNNNTTC	2 cut(s)	8, 186
MseI	TTAA	2 cut(s)	105, 708
MvnI	CGCG	2 cut(s)	131, 449
MwoI	GCNNNNNNNGC	2 cut(s)	28, 760
NdeII	GATC	4 cut(s)	175, 244, 268, 858
NlaIII	CATG	1 cut(s)	38
NruI	TCGCGA	1 cut(s)	131
PdmI	GAANNNNTTC	2 cut(s)	8, 186
PfeI	GAWTC	6 cut(s)	187, 367, 382, 399, 438, 836
PflFI	GACNNNGTC	1 cut(s)	202
PleI	GAGTC	1 cut(s)	426
PmaCI	CACGTG	1 cut(s)	217
PmlI	CACGTG	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	426
Ppu21I	YACGTR	1 cut(s)	217
PspCI	CACGTG	1 cut(s)	217
PstNI	CAGNNNCTG	1 cut(s)	839
PsuI	RGATCY	1 cut(s)	858
PsyI	GACNNNGTC	1 cut(s)	202
RruI	TCGCGA	1 cut(s)	131
RsaI	GTAC	3 cut(s)	139, 484, 610
RsaNI	GTAC	3 cut(s)	138, 483, 609
SaqAI	TTAA	2 cut(s)	105, 708
Sau3AI	GATC	4 cut(s)	175, 244, 268, 858
SchI	GAGTC	1 cut(s)	427
SfaNI	GCATC	3 cut(s)	9, 497, 681
SfcI	CTRYAG	2 cut(s)	308, 522
SmlI	CTYRAG	5 cut(s)	422, 590, 643, 714, 854
SmoI	CTYRAG	5 cut(s)	422, 590, 643, 714, 854
Sse9I	AATT	2 cut(s)	374, 406
SspMI	CTAG	2 cut(s)	272, 500
StyI	CCWWGG	1 cut(s)	499
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	2 cut(s)	219, 656
TaqI	TCGA	4 cut(s)	370, 416, 429, 737
TasI	AATT	2 cut(s)	374, 406
TatI	WGTACW	1 cut(s)	608
TfiI	GAWTC	6 cut(s)	187, 367, 382, 399, 438, 836
Tru1I	TTAA	2 cut(s)	105, 708
Tru9I	TTAA	2 cut(s)	105, 708
TscAI	CASTG	2 cut(s)	207, 496
TspDTI	ATGAA	3 cut(s)	17, 711, 835
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	2 cut(s)	207, 496
Tth111I	GACNNNGTC	1 cut(s)	202
XbaI	TCTAGA	1 cut(s)	271
XmaJI	CCTAGG	1 cut(s)	499
XmnI	GAANNNNTTC	2 cut(s)	8, 186
XspI	CTAG	2 cut(s)	272, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.