AT1G17790

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005416
Physical Location & Seq
Reverse (-)
6125278 .. 6127567
2290 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G17790.1

Sequence Viewer

Length: 1464 bp
ATGTCTTCTGAACATATATCAGGTGGTGGAGCTTCAAAGACGAAGAAACATAAGTGGAGCTCAAGCCAGAACCGACCCAAACCAATGGGAGTTTCTAGACAGGAACGATCTGTTCCTCTTGTATCTCCTTCGAACTCGTTTGCGTCGGAGGACGATCATCACATGTTGAAGATAAGTCTGAGCTCGATTTCGAAGCTTGAGGTTAGGAACTTGAAGCGGAAACTAAAATCTGAGCTTGATGAGGTTAGGAGCTTGATCAAACGGTTCGATCCCGAAGCTAATCCTGGTGGGTCAATGGCTAAAAGTGGTGTTGTAGGGAGAAGCAAGAAGGTGAAAACAGGGAATGGAGGAGGTAAGAAAAGTGGGCATGGAGCTGATAAAGGTACGGTTCAGATTTTTAAGAACTGTAACAGTTTGCTTACGAAATTGATGAAGCATAAGAGTGCATGGGTATTCAATGTCCCTGTGGATGCTAAAGGACTTGGCTTGCATGATTATCACAATATTGTTAAAGAGCCTATGGATTTGGGTACAGTGAAGACTAAGTTGGGGAAAAGTTTGTATAAGTCGCCATTGGATTTCGCTGAAGATGTTAGACTTACTTTTAACAATGCGATTTTGTATAATCCGATTGGGCATGATGTGTATCGTTTTGCTGAGCTTTTGTTGAACATGTTTGAAGATAAATGGGTATCCATTGAAATGCAGTATGATAATCTTCATAGGAAGTTCAAACCAACTCGTGATATTGAGTTCCCTGCTCCTGCTCCATCCATTGCTCCTATTGTAGAGCCATTACCTGCCATTGTTCCTTCACCATCCCCGTCTTCTCCTCCTCCTCCTCCACCGCCACCAGTAGCAGCTCCGGTACTTGAAAATAGGACTTGGGAGAGAGAAGAATCTATGACAATCCCTGTGGAACCTGAAGCTGTAATTACTGCTCCAGAGAAAGCTGAAGAAGAGGAAGCACCTGTTAACAACAGGGACCTCACCTTGGAAGAGAAACGGAGACTCAGTGAAGAGCTTCAAGACTTGCCTTATGACAAACTAGAGACTGTTGTTCAGATCATAAAGAAGAGCAATCCAGAGCTCTCTCAAAAAGATGATGAGATTGAGCTGGATATTGATAGTCTTGATATCAACACGCTTTGGGAGCTTTATAGATTTGTGACTGGGTATAAGGAGAGCTTGAGCAAGAAAAACGAGGCTCATGGATTTGGTTCAGAAAGAGATGCTGAATCTGTTCACAATAGTATTCAAGAACCTACCACTTTAGTAAGTGGCACCACAACATCGAGAGTTACTGAATCAGGAAAAGCAATTCGCACATCATCTCCTGCTCGGCAAGAAAACAATGCAAGTGGATCAAGTAGTTCTAACAGTTCTAGTAGTGACTCAGGATCTTGCTCTAGTGATACTGACAGTGACAGCTCTTCAGGACGTGGATCAGATAATGGTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET Bromodomain

Protein Analysis

487

Amino Acids

53.45

Weight (kDa)

6.23

Isoelectric Point (pI)

59.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 136 - 220 2.9e-18 Bromodomain
BET PF17035 330 - 391 4.8e-24 Bromodomain extra-terminal - transcription regulation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 808
AccB1I GGYRCC 1 cut(s) 1283
AciI CCGC 2 cut(s) 217, 848
AclWI GGATC 4 cut(s) 263, 1372, 1408, 1453
AcuI CTGAAG 4 cut(s) 606, 945, 975, 1419
AfaI GTAC 3 cut(s) 385, 532, 870
AfiI CCNNNNNNNGG 1 cut(s) 994
AflIII ACRYGT 2 cut(s) 162, 672
AjiI CACGTC 1 cut(s) 1442
AjnI CCWGG 1 cut(s) 283
AjuI GAANNNNNNNTTGG 4 cut(s) 76, 108, 530, 562
Alw21I GWGCWC 3 cut(s) 62, 185, 1092
Alw26I GTCTC 2 cut(s) 1003, 1046
AlwI GGATC 4 cut(s) 263, 1372, 1408, 1453
ApeKI GCWGC 1 cut(s) 860
Asp700I GAANNNNTTC 2 cut(s) 1023, 1242
AspS9I GGNCC 1 cut(s) 985
AsuHPI GGTGA 3 cut(s) 343, 807, 982
AsuII TTCGAA 2 cut(s) 131, 191
AvaII GGWCC 1 cut(s) 985
BanI GGYRCC 1 cut(s) 1283
BanII GRGCYC 3 cut(s) 62, 185, 1092
BauI CACGAG 1 cut(s) 741
BbsI GAAGAC 2 cut(s) 545, 819
Bbv12I GWGCWC 3 cut(s) 62, 185, 1092
BbvI GCAGC 1 cut(s) 872
BccI CCATC 2 cut(s) 778, 826
BciT130I CCWGG 1 cut(s) 285
BciVI GTATCC 1 cut(s) 703
BclI TGATCA 1 cut(s) 255
BcoDI GTCTC 2 cut(s) 1003, 1046
BfaI CTAG 4 cut(s) 96, 1049, 1386, 1410
BfuAI ACCTGC 1 cut(s) 808
BfuI GTATCC 1 cut(s) 703
BisI GCNGC 1 cut(s) 861
BlpI GCTNAGC 1 cut(s) 657
BlsI GCNGC 1 cut(s) 862
Bme1390I CCNGG 1 cut(s) 285
Bme18I GGWCC 1 cut(s) 985
BmgBI CACGTC 1 cut(s) 1442
BmgT120I GGNCC 1 cut(s) 985
BmiI GGNNCC 3 cut(s) 921, 986, 1285
BmrFI CCNGG 1 cut(s) 285
BmrI ACTGGG 1 cut(s) 1182
BmsI GCATC 2 cut(s) 460, 1222
BmuI ACTGGG 1 cut(s) 1182
BpiI GAAGAC 2 cut(s) 545, 819
BpmI CTGGAG 1 cut(s) 927
Bpu1102I GCTNAGC 1 cut(s) 657
Bpu14I TTCGAA 2 cut(s) 131, 191
BpuEI CTTGAG 3 cut(s) 46, 218, 1210
BsaBI GATNNNNATC 1 cut(s) 645
BsaJI CCNNGG 1 cut(s) 993
BsaWI WCCGGW 1 cut(s) 865
BsaXI ACNNNNNCTCC 4 cut(s) 1000, 1030, 1318, 1348
Bsc4I CCNNNNNNNGG 1 cut(s) 994
Bse1I ACTGG 2 cut(s) 854, 1177
Bse3DI GCAATG 1 cut(s) 774
Bse8I GATNNNNATC 1 cut(s) 645
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 993
BseGI GGATG 3 cut(s) 475, 770, 818
BseJI GATNNNNATC 1 cut(s) 645
BseLI CCNNNNNNNGG 1 cut(s) 994
BseMI GCAATG 1 cut(s) 774
BseMII CTCAG 5 cut(s) 170, 222, 648, 1027, 1410
BseNI ACTGG 2 cut(s) 854, 1177
BseRI GAGGAG 5 cut(s) 363, 822, 825, 828, 831
BseXI GCAGC 1 cut(s) 872
BshNI GGYRCC 1 cut(s) 1283
BsiHKAI GWGCWC 3 cut(s) 62, 185, 1092
BsiSI CCGG 1 cut(s) 866
BslFI GGGAC 2 cut(s) 446, 998
BslI CCNNNNNNNGG 1 cut(s) 994
BsmAI GTCTC 2 cut(s) 1003, 1046
BsmFI GGGAC 2 cut(s) 446, 998
Bsp119I TTCGAA 2 cut(s) 131, 191
Bsp1286I GDGCHC 3 cut(s) 62, 185, 1092
Bsp143I GATC 8 cut(s) 107, 154, 255, 268, 1065, 1364, 1400, 1445
Bsp1720I GCTNAGC 1 cut(s) 657
BspACI CCGC 2 cut(s) 217, 848
BspCNI CTCAG 5 cut(s) 171, 223, 649, 1026, 1409
BspLI GGNNCC 3 cut(s) 921, 986, 1285
BspMI ACCTGC 1 cut(s) 808
BspPI GGATC 4 cut(s) 263, 1372, 1408, 1453
BspQI GCTCTTC 3 cut(s) 1014, 1070, 1438
BspT104I TTCGAA 2 cut(s) 131, 191
BspT107I GGYRCC 1 cut(s) 1283
BsrDI GCAATG 1 cut(s) 774
BsrI ACTGG 2 cut(s) 854, 1177
BssECI CCNNGG 1 cut(s) 993
BssMI GATC 8 cut(s) 107, 154, 255, 268, 1065, 1364, 1400, 1445
BssSI CACGAG 1 cut(s) 741
BssT1I CCWWGG 1 cut(s) 993
Bst2BI CACGAG 1 cut(s) 741
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 8 cut(s) 264, 388, 407, 413, 535, 1057, 1382, 1424
Bst6I CTCTTC 5 cut(s) 954, 993, 1014, 1070, 1438
BstBI TTCGAA 2 cut(s) 131, 191
BstC8I GCNNGC 1 cut(s) 488
BstDEI CTNAG 6 cut(s) 179, 231, 543, 657, 1013, 1396
BstF5I GGATG 3 cut(s) 475, 770, 818
BstKTI GATC 8 cut(s) 110, 157, 258, 271, 1068, 1367, 1403, 1448
BstMAI GTCTC 2 cut(s) 1003, 1046
BstMBI GATC 8 cut(s) 107, 154, 255, 268, 1065, 1364, 1400, 1445
BstMWI GCNNNNNNNGC 1 cut(s) 1153
BstNI CCWGG 1 cut(s) 285
BstNSI RCATGY 2 cut(s) 166, 676
BstSCI CCNGG 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 872
BstV2I GAAGAC 2 cut(s) 545, 819
BstX2I RGATCY 1 cut(s) 1400
BstXI CCANNNNNNTGG 1 cut(s) 85
BstYI RGATCY 1 cut(s) 1400
BsuI GTATCC 1 cut(s) 703
BtrI CACGTC 1 cut(s) 1442
BtsCI GGATG 3 cut(s) 475, 770, 818
BtsIMutI CAGTG 3 cut(s) 540, 1021, 1429
BveI ACCTGC 1 cut(s) 808
Cac8I GCNNGC 1 cut(s) 488
Cfr13I GGNCC 1 cut(s) 985
CseI GACGC 1 cut(s) 132
Csp6I GTAC 3 cut(s) 384, 531, 869
CspCI CAANNNNNGTGG 4 cut(s) 897, 932, 1342, 1377
CviAII CATG 7 cut(s) 163, 368, 447, 491, 638, 673, 1211
CviQI GTAC 3 cut(s) 384, 531, 869
DdeI CTNAG 6 cut(s) 179, 231, 543, 657, 1013, 1396
DpnI GATC 8 cut(s) 109, 156, 257, 270, 1067, 1366, 1402, 1447
DpnII GATC 8 cut(s) 107, 154, 255, 268, 1065, 1364, 1400, 1445
Eam1104I CTCTTC 5 cut(s) 954, 993, 1014, 1070, 1438
EarI CTCTTC 5 cut(s) 954, 993, 1014, 1070, 1438
Ecl136II GAGCTC 3 cut(s) 60, 183, 1090
Eco130I CCWWGG 1 cut(s) 993
Eco24I GRGCYC 3 cut(s) 62, 185, 1092
Eco32I GATATC 1 cut(s) 1138
Eco47I GGWCC 1 cut(s) 985
Eco53kI GAGCTC 3 cut(s) 60, 183, 1090
Eco57I CTGAAG 4 cut(s) 606, 945, 975, 1419
EcoICRI GAGCTC 3 cut(s) 60, 183, 1090
EcoO109I RGGNCCY 1 cut(s) 985
EcoRII CCWGG 1 cut(s) 283
EcoRV GATATC 1 cut(s) 1138
EcoT14I CCWWGG 1 cut(s) 993
EcoT38I GRGCYC 3 cut(s) 62, 185, 1092
ErhI CCWWGG 1 cut(s) 993
FaeI CATG 7 cut(s) 166, 371, 450, 494, 641, 676, 1214
FalI AAGNNNNNCTT 2 cut(s) 1172, 1204
FaqI GGGAC 2 cut(s) 446, 998
FatI CATG 7 cut(s) 162, 367, 446, 490, 637, 672, 1210
FbaI TGATCA 1 cut(s) 255
Fnu4HI GCNGC 1 cut(s) 861
FokI GGATG 3 cut(s) 482, 757, 805
FriOI GRGCYC 3 cut(s) 62, 185, 1092
Fsp4HI GCNGC 1 cut(s) 861
FspBI CTAG 4 cut(s) 96, 1049, 1386, 1410
GluI GCNGC 1 cut(s) 861
GsuI CTGGAG 1 cut(s) 927
HapII CCGG 1 cut(s) 866
HgaI GACGC 1 cut(s) 132
Hin1II CATG 7 cut(s) 166, 371, 450, 494, 641, 676, 1214
HincII GTYRAC 1 cut(s) 976
HindII GTYRAC 1 cut(s) 976
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 5 cut(s) 899, 1011, 1238, 1307, 1394
HpaI GTTAAC 1 cut(s) 976
HpaII CCGG 1 cut(s) 866
HphI GGTGA 3 cut(s) 343, 807, 982
Hpy166II GTNNAC 2 cut(s) 976, 1246
Hpy188I TCNGA 9 cut(s) 10, 148, 180, 232, 393, 630, 1065, 1225, 1450
Hpy8I GTNNAC 2 cut(s) 976, 1246
Hpy99I CGWCG 1 cut(s) 148
HpyAV CCTTC 3 cut(s) 138, 322, 822
HpyCH4III ACNGT 8 cut(s) 264, 388, 407, 413, 535, 1057, 1382, 1424
HpyCH4IV ACGT 1 cut(s) 1441
HpyCH4V TGCA 4 cut(s) 446, 490, 706, 1358
HpyF10VI GCNNNNNNNGC 1 cut(s) 1153
HpyF3I CTNAG 6 cut(s) 179, 231, 543, 657, 1013, 1396
HpySE526I ACGT 1 cut(s) 1441
Hsp92II CATG 7 cut(s) 166, 371, 450, 494, 641, 676, 1214
Ksp22I TGATCA 1 cut(s) 255
KspAI GTTAAC 1 cut(s) 976
Kzo9I GATC 8 cut(s) 107, 154, 255, 268, 1065, 1364, 1400, 1445
LguI GCTCTTC 3 cut(s) 1014, 1070, 1438
Lsp1109I GCAGC 1 cut(s) 872
LweI GCATC 2 cut(s) 460, 1222
MaeI CTAG 4 cut(s) 96, 1049, 1386, 1410
MaeII ACGT 1 cut(s) 1441
MaeIII GTNAC 5 cut(s) 407, 1168, 1300, 1391, 1424
MalI GATC 8 cut(s) 109, 156, 257, 270, 1067, 1366, 1402, 1447
MboI GATC 8 cut(s) 107, 154, 255, 268, 1065, 1364, 1400, 1445
MflI RGATCY 1 cut(s) 1400
MhlI GDGCHC 3 cut(s) 62, 185, 1092
MluCI AATT 4 cut(s) 425, 933, 1320, 1459
MlyI GAGTC 2 cut(s) 1005, 1388
MmeI TCCRAC 1 cut(s) 126
MroXI GAANNNNTTC 2 cut(s) 1023, 1242
MseI TTAA 4 cut(s) 399, 510, 606, 975
MslI CAYNNNNRTG 2 cut(s) 441, 701
MspI CCGG 1 cut(s) 866
MspR9I CCNGG 1 cut(s) 285
MvaI CCWGG 1 cut(s) 285
MwoI GCNNNNNNNGC 1 cut(s) 1153
NdeII GATC 8 cut(s) 107, 154, 255, 268, 1065, 1364, 1400, 1445
NlaIII CATG 7 cut(s) 166, 371, 450, 494, 641, 676, 1214
NlaIV GGNNCC 3 cut(s) 921, 986, 1285
NmeAIII GCCGAG 1 cut(s) 1321
NmuCI GTSAC 3 cut(s) 1168, 1391, 1424
NspI RCATGY 2 cut(s) 166, 676
NspV TTCGAA 2 cut(s) 131, 191
PciI ACATGT 2 cut(s) 162, 672
PciSI GCTCTTC 3 cut(s) 1014, 1070, 1438
PdmI GAANNNNTTC 2 cut(s) 1023, 1242
PfeI GAWTC 3 cut(s) 899, 1238, 1307
PkrI GCNGC 1 cut(s) 862
PleI GAGTC 2 cut(s) 1005, 1388
PpsI GAGTC 2 cut(s) 1005, 1388
PpuMI RGGWCCY 1 cut(s) 985
PscI ACATGT 2 cut(s) 162, 672
Psp124BI GAGCTC 3 cut(s) 62, 185, 1092
Psp5II RGGWCCY 1 cut(s) 985
Psp6I CCWGG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 3 cut(s) 921, 986, 1285
PspPI GGNCC 1 cut(s) 985
PspPPI RGGWCCY 1 cut(s) 985
PsuI RGATCY 1 cut(s) 1400
RsaI GTAC 3 cut(s) 385, 532, 870
RsaNI GTAC 3 cut(s) 384, 531, 869
RseI CAYNNNNRTG 2 cut(s) 441, 701
SacI GAGCTC 3 cut(s) 62, 185, 1092
SapI GCTCTTC 3 cut(s) 1014, 1070, 1438
SaqAI TTAA 4 cut(s) 399, 510, 606, 975
SatI GCNGC 1 cut(s) 861
Sau3AI GATC 8 cut(s) 107, 154, 255, 268, 1065, 1364, 1400, 1445
Sau96I GGNCC 1 cut(s) 985
SchI GAGTC 2 cut(s) 1005, 1388
ScrFI CCNGG 1 cut(s) 285
SduI GDGCHC 3 cut(s) 62, 185, 1092
SfaNI GCATC 2 cut(s) 460, 1222
SfuI TTCGAA 2 cut(s) 131, 191
SinI GGWCC 1 cut(s) 985
SmiMI CAYNNNNRTG 2 cut(s) 441, 701
SmlI CTYRAG 3 cut(s) 61, 197, 1189
SmoI CTYRAG 3 cut(s) 61, 197, 1189
Sse9I AATT 4 cut(s) 425, 933, 1320, 1459
SsiI CCGC 2 cut(s) 217, 848
SspI AATATT 1 cut(s) 505
SspMI CTAG 4 cut(s) 96, 1049, 1386, 1410
SstI GAGCTC 3 cut(s) 62, 185, 1092
StyD4I CCNGG 1 cut(s) 283
StyI CCWWGG 1 cut(s) 993
TaaI ACNGT 8 cut(s) 264, 388, 407, 413, 535, 1057, 1382, 1424
TaiI ACGT 1 cut(s) 1444
TaqI TCGA 5 cut(s) 131, 185, 191, 267, 1295
TasI AATT 4 cut(s) 425, 933, 1320, 1459
TfiI GAWTC 3 cut(s) 899, 1238, 1307
Tru1I TTAA 4 cut(s) 399, 510, 606, 975
Tru9I TTAA 4 cut(s) 399, 510, 606, 975
TscAI CASTG 3 cut(s) 540, 1021, 1429
TseFI GTSAC 3 cut(s) 1168, 1391, 1424
TseI GCWGC 1 cut(s) 860
Tsp45I GTSAC 3 cut(s) 1168, 1391, 1424
TspDTI ATGAA 2 cut(s) 446, 710
TspGWI ACGGA 1 cut(s) 1021
TspRI CASTG 3 cut(s) 540, 1021, 1429
VpaK11BI GGWCC 1 cut(s) 985
XbaI TCTAGA 1 cut(s) 95
XceI RCATGY 2 cut(s) 166, 676
XmnI GAANNNNTTC 2 cut(s) 1023, 1242
XspI CTAG 4 cut(s) 96, 1049, 1386, 1410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.